BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146722.7 + phase: 1 /pseudo/partial
(293 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10743 similar to UP|Q8H955 (Q8H955) B1 type cyclin, partial (21%) 68 2e-12
TC11708 similar to UP|O82718 (O82718) Cyclin, partial (31%) 68 2e-12
BP030979 59 1e-09
AV415490 31 0.22
BP068753 30 0.37
TC14589 similar to UP|Q9SI72 (Q9SI72) F23N19.14, partial (38%) 28 1.4
TC8437 homologue to GB|AAB86804.1|2454184|ATU80186 pyruvate dehy... 28 2.4
TC9488 27 4.1
BP075054 26 6.9
AV426818 26 9.1
BG662007 26 9.1
>TC10743 similar to UP|Q8H955 (Q8H955) B1 type cyclin, partial (21%)
Length = 554
Score = 68.2 bits (165), Expect = 2e-12
Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 1/142 (0%)
Frame = +1
Query: 135 ITDNTYSRQEVLKMEKEVLNLLHFQLAVPTIKTFLRRFIQVAQTSSKVAQADLEFLANYL 194
I+++ Y++ ++ ME+ +L L + L VPT FL R SS +E LA +L
Sbjct: 1 ISNDAYTKHQIHSMERSILEKLQWYLTVPTPYVFLVRL------SSVQPDKQMENLAFFL 162
Query: 195 AELALVEY-SFLQFQPSKIAASSVLLARWTLNQSEHPWNPTLEHYTNYKASELKTTVLEL 253
AEL L Y + + + PS IAAS++ AR TLN+ W+ TL+ ++Y ++ L
Sbjct: 163 AELTLEHYQAIVSYSPSTIAASAIYAARCTLNRRPF-WSETLKRLSSYCTEQIIECAKLL 339
Query: 254 IDLQLNTKRCRLNAVREKYQHQ 275
+ LQ + + NA+ K+ +
Sbjct: 340 VSLQTSAADSKPNALYWKFSSE 405
>TC11708 similar to UP|O82718 (O82718) Cyclin, partial (31%)
Length = 668
Score = 68.2 bits (165), Expect = 2e-12
Identities = 43/121 (35%), Positives = 62/121 (50%)
Frame = +2
Query: 152 VLNLLHFQLAVPTIKTFLRRFIQVAQTSSKVAQADLEFLANYLAELALVEYSFLQFQPSK 211
+L L + L VPT FL RFI+ + V +A++L+EL ++ Y L + PS
Sbjct: 5 ILGRLEWTLTVPTPFVFLTRFIKASVPDEGVTN-----MAHFLSELGMMHYDTLMYCPSM 169
Query: 212 IAASSVLLARWTLNQSEHPWNPTLEHYTNYKASELKTTVLELIDLQLNTKRCRLNAVREK 271
IAAS+V AR TLN+S WN TL+ +T+Y +L L+ +L V K
Sbjct: 170 IAASAVYAARCTLNKSP-AWNETLKLHTDYSEEQLMDCARLLVSFHCTVGNGKLKVVFRK 346
Query: 272 Y 272
Y
Sbjct: 347 Y 349
>BP030979
Length = 510
Score = 58.5 bits (140), Expect = 1e-09
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Frame = +3
Query: 24 RDSP-IWTSYAPDIYTNIHVRECE--RRPLANYMETLQQDITPGMRGILVDWLVEVADEF 80
RD P + Y DIY + E + +RPL +Y++ +Q+D+ MRG+ VDWLVEV++E+
Sbjct: 198 RDDPQMCLPYVSDIYEYLRSMEVDPSKRPLPDYVQKVQRDVNANMRGVXVDWLVEVSEEY 377
Query: 81 KLVPRHTLPCCESH 94
KLV TL C S+
Sbjct: 378 KLV-SDTLYFCVSY 416
>AV415490
Length = 377
Score = 31.2 bits (69), Expect = 0.22
Identities = 19/48 (39%), Positives = 26/48 (53%), Gaps = 1/48 (2%)
Frame = +3
Query: 20 DSKLRDSPIW-TSYAPDIYTNIHVRECERRPLANYMETLQQDITPGMR 66
DS+LRD+P W S AP + T ++ RRPL T ++ PG R
Sbjct: 12 DSELRDAPPWRQSTAPSLRTASCLQFPNRRPLTRMRRTFRR*DFPGNR 155
>BP068753
Length = 399
Score = 30.4 bits (67), Expect = 0.37
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 8 LSASVGLGIVDIDSKLRDSPIWTSYAPDIYTNIHVRECE 46
+S VGL ++ SPI+TS +P+I+ N V ECE
Sbjct: 174 MSPKVGLNYAVMEDS---SPIFTSISPEIHFNPQVMECE 281
>TC14589 similar to UP|Q9SI72 (Q9SI72) F23N19.14, partial (38%)
Length = 826
Score = 28.5 bits (62), Expect = 1.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 82 LVPRHTLPCCESH*SIPFPTFDYQTKAAVAWYYLHADFIYEEI 124
LV HTLPCC S D +AA + + L ++ +++++
Sbjct: 172 LVQSHTLPCCVRPNSHSIRARDSPERAATSHHCLDSEHVHDQV 300
>TC8437 homologue to GB|AAB86804.1|2454184|ATU80186 pyruvate dehydrogenase
E1 beta subunit {Arabidopsis thaliana;} , partial (40%)
Length = 915
Score = 27.7 bits (60), Expect = 2.4
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2
Query: 99 FPTFDYQTKAAVAWYYLHADFIYEEICAPGVEDFCVITDNTYSRQEVLKM 148
+P F A + WY + + + C+PG+ +DNTYS +L +
Sbjct: 200 YPLFTNVFAACMTWYLI-LE*VNIVTCSPGLTISASSSDNTYSSSGILSL 54
>TC9488
Length = 543
Score = 26.9 bits (58), Expect = 4.1
Identities = 16/48 (33%), Positives = 26/48 (53%)
Frame = -2
Query: 1 INLICEKLSASVGLGIVDIDSKLRDSPIWTSYAPDIYTNIHVRECERR 48
+NL+ K + S L + D R S I T +P +YT+I + C+R+
Sbjct: 497 VNLLRWKSTLSYRLSFLTKD---RSSSITTLVSPPMYTHIFLGTCQRK 363
>BP075054
Length = 409
Score = 26.2 bits (56), Expect = 6.9
Identities = 11/38 (28%), Positives = 21/38 (54%)
Frame = -1
Query: 127 PGVEDFCVITDNTYSRQEVLKMEKEVLNLLHFQLAVPT 164
P ++ C I+ +T++ Q L + +++N QLA T
Sbjct: 328 PFLQSRCTISHSTFAMQRKLAHDHDIMNFAFVQLATIT 215
>AV426818
Length = 430
Score = 25.8 bits (55), Expect = 9.1
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 134 VITDNTYSRQEVLKMEKEVLNLLHFQLAVPTIKTFLRRFIQ 174
++ + S++++ +MEKE+L L+ P I L+ F+Q
Sbjct: 268 ILREIDLSQKQLAQMEKELLGYESIDLSRPNIANELKIFLQ 390
>BG662007
Length = 357
Score = 25.8 bits (55), Expect = 9.1
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -1
Query: 199 LVEYSFLQFQPSKIAASSVLLARWTLNQSEHP 230
+V Y + QPS I L W +++HP
Sbjct: 108 MVHYPYTLLQPSNILCQMCLPTVWWFQKNQHP 13
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.137 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,235,742
Number of Sequences: 28460
Number of extensions: 70959
Number of successful extensions: 454
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of query: 293
length of database: 4,897,600
effective HSP length: 90
effective length of query: 203
effective length of database: 2,336,200
effective search space: 474248600
effective search space used: 474248600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Medicago: description of AC146722.7