BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146722.13 + phase: 0
(142 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AU089304 52 4e-08
TC9468 similar to UP|Q9FMN3 (Q9FMN3) Emb|CAB53482.1, partial (72%) 29 0.27
TC18787 29 0.36
TC19075 weakly similar to GB|CAB02877.1|3875441|CEE02A10 C. eleg... 29 0.36
TC14068 homologue to UP|Q9SLR7 (Q9SLR7) Thiamin biosynthetic enz... 28 0.47
TC14645 similar to UP|Q41122 (Q41122) Proline-rich protein precu... 28 0.61
BP050007 28 0.61
TC17861 28 0.79
TC9577 weakly similar to UP|ATPD_PEA (Q02758) ATP synthase delta... 28 0.79
TC18762 similar to UP|Q9VVG2 (Q9VVG2) CG13731-PA, partial (3%) 27 1.4
TC12224 similar to PIR|D96602|D96602 nucleolar protein [imported... 27 1.4
TC18617 weakly similar to UP|Q9FPQ5 (Q9FPQ5) Gamete-specific hyd... 27 1.8
TC12483 weakly similar to UP|Q40552 (Q40552) Pistil extensin lik... 27 1.8
BP068429 27 1.8
BI420016 27 1.8
AV767473 27 1.8
TC14636 weakly similar to UP|Q9ZUS6 (Q9ZUS6) At2g37400 protein, ... 26 2.3
TC8287 UP|AAQ87022 (AAQ87022) VDAC2.1, complete 26 2.3
TC14313 similar to UP|O80407 (O80407) Chalcone synthase , parti... 26 2.3
TC13640 similar to UP|Q9LN84 (Q9LN84) T12C24.16, partial (16%) 26 2.3
>AU089304
Length = 389
Score = 52.0 bits (123), Expect = 4e-08
Identities = 29/66 (43%), Positives = 36/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 45 PPEIELEFVGPKPEGDGSFPVDKVKAISGEKLMRSIMSDNKIDLYATYGKLM-NCGGGGS 103
PP + FV DG+ + A G KL R IM D+ I+LY YGKL NC GG+
Sbjct: 149 PPSVGFAFVSSVLLPDGTPDIHYRSATGGXKL-RDIMLDSNIELYGPYGKLFSNCAXGGT 325
Query: 104 CGTCIV 109
C TC+V
Sbjct: 326 CATCMV 343
>TC9468 similar to UP|Q9FMN3 (Q9FMN3) Emb|CAB53482.1, partial (72%)
Length = 1317
Score = 29.3 bits (64), Expect = 0.27
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 97 NCGGGGSCGTCIVEKPESWRL 117
+CGGGG C +C E+ WR+
Sbjct: 297 DCGGGGGCLSCGEEQRTEWRM 235
>TC18787
Length = 494
Score = 28.9 bits (63), Expect = 0.36
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 21/48 (43%)
Frame = +2
Query: 103 SCGTCIVE---------------------KPESWRLACQTIVGNKENS 129
+C TC+VE KP++WRLAC T VG +++
Sbjct: 2 TCATCMVEVLEGTELLNPRTDKEKEKLKRKPKNWRLACPTPVGEPDSN 145
>TC19075 weakly similar to GB|CAB02877.1|3875441|CEE02A10 C. elegans GRL-23
protein (corresponding sequence E02A10.2)
{Caenorhabditis elegans;} , partial (7%)
Length = 354
Score = 28.9 bits (63), Expect = 0.36
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Frame = -1
Query: 93 GKLMNCGGGGSCGTCI--VEKPESWR 116
GK CGGGG CG + + ESWR
Sbjct: 345 GKSWECGGGGGCGEVLGKGKGEESWR 268
>TC14068 homologue to UP|Q9SLR7 (Q9SLR7) Thiamin biosynthetic enzyme,
partial (85%)
Length = 1494
Score = 28.5 bits (62), Expect = 0.47
Identities = 20/77 (25%), Positives = 35/77 (44%), Gaps = 3/77 (3%)
Frame = +3
Query: 10 PFPLTAGNRNPTIYFPRRRPN--SVCLVANSPESPSPPPEIELEFVGPKPEGDGSFPVDK 67
P P + + N + F +P+ +C+ + +PSPPP +L GSF
Sbjct: 111 PTPSSLSSFNKPLTFQSMKPSLRKLCMSMAASSAPSPPPPYDL----------GSFKFAP 260
Query: 68 VK-AISGEKLMRSIMSD 83
+K +I ++ R M+D
Sbjct: 261 IKESIVSREMTRRYMTD 311
>TC14645 similar to UP|Q41122 (Q41122) Proline-rich protein precursor,
partial (52%)
Length = 1060
Score = 28.1 bits (61), Expect = 0.61
Identities = 18/57 (31%), Positives = 27/57 (46%), Gaps = 1/57 (1%)
Frame = -2
Query: 25 PRRRPNSVCLVANSPESPSPPPEIELEFVGPK-PEGDGSFPVDKVKAISGEKLMRSI 80
P RPN + E+ + +L FVGPK +G GS V+ +S L +S+
Sbjct: 786 PEPRPNDTTMQIGGLEARGCTDQKDLAFVGPKGGDGLGSLQVEVAVVVSLHLLNQSV 616
>BP050007
Length = 567
Score = 28.1 bits (61), Expect = 0.61
Identities = 22/75 (29%), Positives = 36/75 (47%), Gaps = 5/75 (6%)
Frame = +3
Query: 18 RNPTIYFPRRRPNSVCLVA-----NSPESPSPPPEIELEFVGPKPEGDGSFPVDKVKAIS 72
+NP+I R+P++ + +SP PSP ++F P+P + P KVK+
Sbjct: 270 QNPSINLSFRQPSTETATSRLAPPSSPARPSPENLQNMDFESPRP----ALPEIKVKS-- 431
Query: 73 GEKLMRSIMSDNKID 87
L R++M N D
Sbjct: 432 ---LFRALMISNGED 467
>TC17861
Length = 510
Score = 27.7 bits (60), Expect = 0.79
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = +2
Query: 18 RNPTIYFPRRRPNS---VCLVANSPESPSPPPEIE 49
R+P P P S + +NSP PSPPP I+
Sbjct: 227 RSPVWKIPTSAPRSSPPMAGTSNSPSPPSPPPPIQ 331
>TC9577 weakly similar to UP|ATPD_PEA (Q02758) ATP synthase delta chain,
chloroplast precursor , partial (54%)
Length = 627
Score = 27.7 bits (60), Expect = 0.79
Identities = 14/36 (38%), Positives = 19/36 (51%)
Frame = +3
Query: 9 TPFPLTAGNRNPTIYFPRRRPNSVCLVANSPESPSP 44
+P P T+ RNP+ P R P S +N +SP P
Sbjct: 114 SPPPETSSPRNPSSTSPSRAPPSPHSTSNLSQSPPP 221
>TC18762 similar to UP|Q9VVG2 (Q9VVG2) CG13731-PA, partial (3%)
Length = 759
Score = 26.9 bits (58), Expect = 1.4
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Frame = -3
Query: 25 PRRRPNSVCLVAN---SPESPSPPPEIELEFVGPKPEGDG 61
P RR ++ N P SPSPPP E P G G
Sbjct: 412 PSRRSSAASSAGNRDTDPMSPSPPPRCSAEGSVSAPRGGG 293
>TC12224 similar to PIR|D96602|D96602 nucleolar protein [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(16%)
Length = 315
Score = 26.9 bits (58), Expect = 1.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 36 ANSPESPSPPPEIELEFVGPKPEG 59
+++P +PSPPP + P P+G
Sbjct: 174 SSAPSTPSPPPSMPSNSATPSPKG 245
>TC18617 weakly similar to UP|Q9FPQ5 (Q9FPQ5) Gamete-specific
hydroxyproline-rich glycoprotein a2, partial (13%)
Length = 578
Score = 26.6 bits (57), Expect = 1.8
Identities = 15/51 (29%), Positives = 21/51 (40%), Gaps = 7/51 (13%)
Frame = +1
Query: 10 PFPLTAGNRNPTIYFPRRRPNSVCLVA-------NSPESPSPPPEIELEFV 53
P PLT +P PR ++A N P P PPP++ + V
Sbjct: 232 PHPLTPSQPSPVPQNPRHVSLRHVIIATKPHHRKNQPPQPQPPPQLRVPAV 384
>TC12483 weakly similar to UP|Q40552 (Q40552) Pistil extensin like protein
(Fragment), partial (6%)
Length = 534
Score = 26.6 bits (57), Expect = 1.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 9 TPFPLTAGNRNPTIYFPRRRPNSVCLVANSPESPSPPP 46
TP P +RNP P PN+ + + P PPP
Sbjct: 190 TPKPFPLHSRNPATKQPPPPPNNHMQSPPATKQPPPPP 303
>BP068429
Length = 412
Score = 26.6 bits (57), Expect = 1.8
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Frame = -2
Query: 40 ESPSPPPEIELE--FVGPKPEG---DGSFPVDKVKAISG 73
ESP PPP LE F PKP G DG + + K G
Sbjct: 327 ESPLPPPSQLLENVFADPKPFGIGPDGKYRCEDPKFTEG 211
>BI420016
Length = 559
Score = 26.6 bits (57), Expect = 1.8
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +2
Query: 9 TPFPLTAGNRNPTIYFPRRRPNSVCLVANSPESPSPPPEIELEFVGPKPEGDGS 62
TP P ++ P P PN+ ++ P P+PP P P GS
Sbjct: 236 TPSPPSSPTLTPPPSPPSPTPNAPLSPSSPPSPPTPPSPPPSPAPNPTPSATGS 397
>AV767473
Length = 374
Score = 26.6 bits (57), Expect = 1.8
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +1
Query: 37 NSPESPSPPPEIELEFVGPKPEGDGSFPVDKV 68
N P P PPP L VG PE PV+ V
Sbjct: 13 NVPAPPQPPPAPPLHDVGVFPEKHPQRPVEGV 108
>TC14636 weakly similar to UP|Q9ZUS6 (Q9ZUS6) At2g37400 protein, partial
(43%)
Length = 1316
Score = 26.2 bits (56), Expect = 2.3
Identities = 15/39 (38%), Positives = 20/39 (50%), Gaps = 5/39 (12%)
Frame = -3
Query: 25 PRRRPNSV----CLVANSPESP-SPPPEIELEFVGPKPE 58
PR R + V C N+P +P +PPP GP+PE
Sbjct: 537 PRTRSSPVRARRCGCTNAPSAPAAPPPLAPARSNGPRPE 421
>TC8287 UP|AAQ87022 (AAQ87022) VDAC2.1, complete
Length = 1194
Score = 26.2 bits (56), Expect = 2.3
Identities = 15/36 (41%), Positives = 21/36 (57%)
Frame = +2
Query: 12 PLTAGNRNPTIYFPRRRPNSVCLVANSPESPSPPPE 47
P++A RNP I+ PR + + NSP P+ PPE
Sbjct: 116 PISA--RNPEIF*PR----TTAPIRNSPFLPTAPPE 205
>TC14313 similar to UP|O80407 (O80407) Chalcone synthase , partial (98%)
Length = 1567
Score = 26.2 bits (56), Expect = 2.3
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 31 SVCLVANSPESPSPPPEIELEFVGPKPEGDGSFP 64
S+ LV +P SPSPPP + L P P G P
Sbjct: 443 SLTLVDPTP*SPSPPP-LFLASAPPPPPGPDEHP 345
>TC13640 similar to UP|Q9LN84 (Q9LN84) T12C24.16, partial (16%)
Length = 316
Score = 26.2 bits (56), Expect = 2.3
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 37 NSPESPSPPPEIELEFVGPKPEGDGSFP 64
N P P PPP I+L V + S P
Sbjct: 106 NPPSPPQPPPPIQLPSVNTRFSSSSSVP 189
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.137 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,173,944
Number of Sequences: 28460
Number of extensions: 54825
Number of successful extensions: 560
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of query: 142
length of database: 4,897,600
effective HSP length: 81
effective length of query: 61
effective length of database: 2,592,340
effective search space: 158132740
effective search space used: 158132740
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)
Medicago: description of AC146722.13