TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146721.5 - phase: 0 /pseudo
         (59 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8770 homologue to UP|O22111 (O22111) 6-phosphogluconate dehydr...    73  1e-14
TC15545 homologue to GB|AAN73296.1|25141203|BT002299 At3g02360/F...    72  2e-14
BP041751                                                               47  1e-06
TC10558 similar to UP|LBD6_ARATH (O04479) LOB domain protein 6 (...    24  5.2
AV419524                                                               23  8.9

>TC8770 homologue to UP|O22111 (O22111) 6-phosphogluconate dehydrogenase,
           decarboxylating  , partial (70%)
          Length = 1154

 Score = 72.8 bits (177), Expect = 1e-14
 Identities = 39/69 (56%), Positives = 44/69 (63%), Gaps = 10/69 (14%)
 Frame = +3

Query: 1   MATSEPTNLARIGLAVIGQNLALNIAEKGFQFQF----------TIERAKQEGNLPIYGY 50
           MA    T +   GLAV+GQNLALNIAEKGF              T+ERAKQEGNLP+YGY
Sbjct: 51  MAQPNLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPVYGY 230

Query: 51  HDFKYFVQS 59
           HD + FV S
Sbjct: 231 HDAEAFVHS 257


>TC15545 homologue to GB|AAN73296.1|25141203|BT002299 At3g02360/F11A12_104
           {Arabidopsis thaliana;} , partial (31%)
          Length = 663

 Score = 72.4 bits (176), Expect = 2e-14
 Identities = 37/64 (57%), Positives = 44/64 (67%), Gaps = 10/64 (15%)
 Frame = +1

Query: 6   PTNLARIGLAVIGQNLALNIAEKGFQFQF----------TIERAKQEGNLPIYGYHDFKY 55
           PT +   GLAV+GQNLALNIA+KGF              T+ERAK+EGNLP+YGYHD + 
Sbjct: 208 PTRIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETVERAKKEGNLPVYGYHDPES 387

Query: 56  FVQS 59
           FVQS
Sbjct: 388 FVQS 399


>BP041751 
          Length = 471

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 26/57 (45%), Positives = 36/57 (62%), Gaps = 10/57 (17%)
 Frame = +3

Query: 13  GLAVIGQNLALNIAEKGFQFQF----------TIERAKQEGNLPIYGYHDFKYFVQS 59
           GLAV+GQ LALNIA+KGF              T++RA +EG+LP+ G ++ + FV S
Sbjct: 165 GLAVMGQXLALNIADKGFPISVYNRTTSKVDETVDRAHREGSLPLIGQYNPRDFVLS 335


>TC10558 similar to UP|LBD6_ARATH (O04479) LOB domain protein 6 (ASYMMETRIC
           LEAVES2), partial (20%)
          Length = 669

 Score = 24.3 bits (51), Expect = 5.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 1   MATSEPTNLARIGLAVIGQNLALNIA 26
           +A +E + +   GLA+ GQNLA   A
Sbjct: 607 LAKNELSKIQNFGLAMAGQNLAATTA 530


>AV419524 
          Length = 194

 Score = 23.5 bits (49), Expect = 8.9
 Identities = 10/19 (52%), Positives = 12/19 (62%)
 Frame = +1

Query: 2  ATSEPTNLARIGLAVIGQN 20
          A S P  L R+GL  IG+N
Sbjct: 70 AVSLPAKLCRLGLTYIGKN 126


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.138    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 729,293
Number of Sequences: 28460
Number of extensions: 5348
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of query: 59
length of database: 4,897,600
effective HSP length: 35
effective length of query: 24
effective length of database: 3,901,500
effective search space: 93636000
effective search space used: 93636000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)