BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146720.2 - phase: 0
(1333 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV766088 165 5e-41
AV780009 164 9e-41
BP066094 125 8e-30
BP063902 94 1e-19
BP063694 92 7e-19
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 85 9e-17
AU088980 84 1e-16
BP075943 82 6e-16
BP084332 82 7e-16
BP057233 80 2e-15
BP043850 77 2e-14
TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%) 73 3e-13
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p... 66 3e-11
AV424544 64 2e-10
TC9337 similar to UP|PME_PRUPE (Q43062) Pectinesterase PPE8B pre... 64 2e-10
BP033602 64 2e-10
AV767042 62 8e-10
AV427921 58 1e-08
AV769206 54 1e-07
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 54 2e-07
>AV766088
Length = 501
Score = 165 bits (417), Expect = 5e-41
Identities = 76/138 (55%), Positives = 95/138 (68%)
Frame = -3
Query: 389 QTGMPLMRCNSSGDLYPLATRPYYPSTTPSTFAALSNEIWHNRLGHPGVSILNSLHRNNS 448
QTG+PLMRCNS GDLYP+ T FA ++ +WH+RLGHP S L L N
Sbjct: 397 QTGIPLMRCNSPGDLYPV--------TLSFPFAGIAQSLWHSRLGHPSSSALRYLRSNKF 242
Query: 449 ILCNKFRNNFFCQSCQLGKQIKLPFYESLSSTLLPFDIVHSDIWTSPILSSGGHHYYILF 508
I + C+SC GK ++LPF S + T++PFDI+HSD+WTSP+LSS GH +Y+LF
Sbjct: 241 ISYELLNYSPVCESCVFGKHVRLPFVSSNNVTVMPFDILHSDLWTSPVLSSAGHRFYVLF 62
Query: 509 LDDFTDFLWTFPLTNKSQ 526
LDDFTDFLWTFPL+NKSQ
Sbjct: 61 LDDFTDFLWTFPLSNKSQ 8
Score = 48.9 bits (115), Expect = 5e-06
Identities = 20/33 (60%), Positives = 27/33 (81%)
Frame = -2
Query: 276 PTDIQAAMHSLSLAPPDEQWYMDTGATSHMTAN 308
PTD+ AMH+++LAPPD YMDTGA+SH+ A+
Sbjct: 497 PTDLATAMHTMTLAPPDST*YMDTGASSHVAAS 399
>AV780009
Length = 529
Score = 164 bits (415), Expect = 9e-41
Identities = 76/165 (46%), Positives = 109/165 (66%)
Frame = -1
Query: 1145 ALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWS 1204
A R++RY+KG GL + KL Y+D+DW GCPDTR+S +GY ++LG +L+SW
Sbjct: 526 AATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISWR 347
Query: 1205 AKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLVYCDNVSAVYLSGNP 1264
K+Q T+SRSS+EAEYR +A V E WL L L+ V ++CDN SA++++ NP
Sbjct: 346 TKKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFLKLNVPLPVPLFCDNQSALHIAHNP 167
Query: 1265 IQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTKGLP 1309
H+RTKHIE+D H VR K+ G + ++ + + +Q+ADIFTK P
Sbjct: 166 TFHERTKHIELDCHVVRAKLQAGLIHLLPISTHHQLADIFTKPCP 32
>BP066094
Length = 532
Score = 125 bits (315), Expect(2) = 8e-30
Identities = 61/147 (41%), Positives = 95/147 (64%)
Frame = +2
Query: 934 KPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGFRDPQHPDYVCLLKKS 993
K IR ++S +++ + LHQ++VK+AFL+G ++E VY++QPPG D ++ D++ LKKS
Sbjct: 89 KTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKKS 268
Query: 994 LYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILLYVDDIILTASSDT 1053
LYGLKQAPRAWY+R + ++ D +LF DD + +YVDDII +++ +
Sbjct: 269 LYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANPS 448
Query: 1054 LRQSIMSKLNSEFAMKDLGPLSYFLGI 1080
L + + +EF M+ +G L YFLGI
Sbjct: 449 LCKEFSEMMQAEFEMRMMGELKYFLGI 529
Score = 23.1 bits (48), Expect(2) = 8e-30
Identities = 9/17 (52%), Positives = 13/17 (75%)
Frame = +3
Query: 918 NQQTGVDCGETFSPVVK 934
+QQ G+D ETF+PV +
Sbjct: 42 SQQ*GIDYTETFAPVAR 92
>BP063902
Length = 494
Score = 94.0 bits (232), Expect = 1e-19
Identities = 44/92 (47%), Positives = 57/92 (61%)
Frame = -3
Query: 385 VKDFQTGMPLMRCNSSGDLYPLATRPYYPSTTPSTFAALSNEIWHNRLGHPGVSILNSLH 444
++ +TGMPL+RCNS GDLYP+ T S FA L++ +WH+RLGHP S LN L
Sbjct: 285 LRHLKTGMPLLRCNSLGDLYPV--------TRSSPFAGLASSVWHHRLGHPASSALNHLR 130
Query: 445 RNNSILCNKFRNNFFCQSCQLGKQIKLPFYES 476
N I C R++ C SC LGK ++LPF S
Sbjct: 129 NNKLIFCEPSRSSSVCDSCVLGKHVRLPFSSS 34
Score = 86.3 bits (212), Expect = 3e-17
Identities = 42/77 (54%), Positives = 52/77 (66%)
Frame = -2
Query: 232 WATPPCPYPTTGNWQRPVVPNRQAGILGAKPQQAHVAATPSSYAPTDIQAAMHSLSLAPP 291
WA PCPYPT+ RP+ +Q G+LG +PQ A+P APTDI AAMH++SL PP
Sbjct: 493 WACLPCPYPTS-QXSRPMGVPQQPGVLGPRPQAYTATASP---APTDIAAAMHTMSLTPP 326
Query: 292 DEQWYMDTGATSHMTAN 308
D WYMDTGA+SH A+
Sbjct: 325 DTPWYMDTGASSHTAAS 275
>BP063694
Length = 511
Score = 91.7 bits (226), Expect = 7e-19
Identities = 50/162 (30%), Positives = 82/162 (49%), Gaps = 2/162 (1%)
Frame = -2
Query: 383 FSVKDFQTGMPLMRCNSSGDLYPLATRPYYPSTTPSTFAALSNEIWHNRLGHPGVSILNS 442
F +++ +TG L R LY L TT S S E+WH+RLGH I+
Sbjct: 492 FVIQNRKTGAVLGRXRCDQGLYVLNQDSQALLTTSSPLPRASFELWHSRLGHVNFDIIKQ 313
Query: 443 LHRNNSI-LCNKFRNNFFCQSCQLGKQIKLPFYESLSSTLLPFDIVHSDI-WTSPILSSG 500
LH++ + + + C SCQ+ K +L F+++ D++H D+ SP+ S
Sbjct: 312 LHKHGCLDVSSILPKPICCTSCQMAKSKRLVFHDNNKRASAVLDLIHCDLRGPSPVASID 133
Query: 501 GHHYYILFLDDFTDFLWTFPLTNKSQAHSIFLQFCNHIKTQF 542
G Y+++F+DDF+ F W +PL KS + L+F ++ +F
Sbjct: 132 GFSYFVIFVDDFSRFTWFYPLKRKSDFSDVLLRFKVFMENRF 7
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 84.7 bits (208), Expect = 9e-17
Identities = 38/82 (46%), Positives = 56/82 (67%)
Frame = +1
Query: 1232 WLRNLLLELQCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRV 1291
WL LL +L+ P + LVYCDN SA +++ NP+ H+RTKHIE+D H VRE++ +G + +
Sbjct: 4 WLTYLLQDLKVPFEQPALVYCDNNSARHIAANPVFHERTKHIEIDCHIVRERIQKGLIHL 183
Query: 1292 MHVPSRYQIADIFTKGLPLQLF 1313
+ + S +ADI+TK L Q F
Sbjct: 184 LPISSSEPLADIYTKALSPQNF 249
>AU088980
Length = 360
Score = 84.0 bits (206), Expect = 1e-16
Identities = 46/115 (40%), Positives = 62/115 (53%)
Frame = +2
Query: 584 NGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKKLALQTPTTILYQK 643
N VERK R I N+ R L+ H+ LP + W A++ A YL+N LP+ L Q P L
Sbjct: 2 NSIVERKHRHILNVTRALMFHSYLPKNLWTFAVKHAAYLINXLPSPLLKGQCPYQFLNND 181
Query: 644 SPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFELSSRKI 698
SP+ LKVFG LC+ + KL R+ CVFLG+ + GY +L + I
Sbjct: 182 SPTLLDLKVFGTLCYSSTLTHNXQKLDPRARKCVFLGFKTGTXGYIVMDLPTTXI 346
>BP075943
Length = 547
Score = 82.0 bits (201), Expect = 6e-16
Identities = 56/171 (32%), Positives = 81/171 (46%), Gaps = 30/171 (17%)
Frame = -3
Query: 1031 SGDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVTR------ 1084
SG TA +LLYVDD++L + Q + S L+ +F +KDLG YFLG+ + R
Sbjct: 539 SGSFTA-LLLYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIV 363
Query: 1085 -----------------------HSDDTKAKLSGTS-GNPYHDPSEYRSLAGALQYLTFT 1120
+S T ++ GT+ G P D YR + G L YL T
Sbjct: 362 LNQRKYALQLISDSGHFGFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNTT 183
Query: 1121 RPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDKL 1171
RPDI++AV Q+ F+ P H L ++Y+ G+ GL YP++ L
Sbjct: 182 RPDITFAVNQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGL-FYPASSSTL 33
>BP084332
Length = 368
Score = 81.6 bits (200), Expect = 7e-16
Identities = 46/117 (39%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Frame = +2
Query: 1199 NLVSWSAK-RQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLVYCDNVSA 1257
N+ W A Q T++ S+AEAEY A ++ W+++ L + Q + +YCDN +A
Sbjct: 2 NVNFWEAT*GQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIP-IYCDNTAA 178
Query: 1258 VYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTKGLPLQLFD 1314
+ LS NPI H R KHIE+ HF+R+ V +G + + V + +Q ADIFTK L F+
Sbjct: 179 ISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFN 349
>BP057233
Length = 473
Score = 80.1 bits (196), Expect = 2e-15
Identities = 38/86 (44%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Frame = -2
Query: 1243 PVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIAD 1302
P+ + +++CDN+SA L+ NP+ H R+KHIE+D+H++R++V + +V V +VP+ QIAD
Sbjct: 466 PMPRKPILWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPTTDQIAD 287
Query: 1303 IFTKGLPLQLFDDFRDSLH-IRQPPV 1327
TK L F RD L I PPV
Sbjct: 286 CLTKPLSHTRFSQLRDKLGVIHSPPV 209
>BP043850
Length = 515
Score = 77.0 bits (188), Expect = 2e-14
Identities = 42/104 (40%), Positives = 59/104 (56%)
Frame = -1
Query: 1228 SESCWLRNLLLELQCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARG 1287
SE WLR LL EL ++ T ++ DN SA+ ++ NP+ H+ T+HIE+D H VRE R
Sbjct: 515 SEIIWLRGLLSELGFLQSQPTPLHADNTSAIQIAANPVYHEWTRHIEVDCHSVREAYDRR 336
Query: 1288 QVRVMHVPSRYQIADIFTKGLPLQLFDDFRDSLHIRQPPVSTTG 1331
+ + HV + QIADI TK L Q + L + + P S G
Sbjct: 335 VITLPHVSTSVQIADILTKSLTRQRHNFLVSKLMLVESPASI*G 204
>TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%)
Length = 550
Score = 73.2 bits (178), Expect = 3e-13
Identities = 34/78 (43%), Positives = 52/78 (66%)
Frame = +3
Query: 1229 ESCWLRNLLLELQCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQ 1288
E+ WL L +L+ ++YCDN SA++L+ N + H+RT++IE+D H V KV G
Sbjct: 21 EALWLTYALADLRIASLLLVVIYCDNRSALHLAANSVFHKRTENIEIDCHIV*VKVLFGI 200
Query: 1289 VRVMHVPSRYQIADIFTK 1306
+ ++HVPS Q+AD+FTK
Sbjct: 201 LHLLHVPSSDQVADVFTK 254
>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
Length = 670
Score = 66.2 bits (160), Expect = 3e-11
Identities = 31/77 (40%), Positives = 49/77 (63%)
Frame = +1
Query: 1232 WLRNLLLELQCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRV 1291
WL +L +L+ P +L+YCD+ SA +++ N + H+RTKH+++D H VREK+ +
Sbjct: 13 WLTYILQDLRVPFISPSLLYCDSQSARHIATNAVFHERTKHLDIDCHVVREKLQAKLFHL 192
Query: 1292 MHVPSRYQIADIFTKGL 1308
+ + S Q ADI TK L
Sbjct: 193 LPISSVDQTADILTKPL 243
>AV424544
Length = 276
Score = 63.9 bits (154), Expect = 2e-10
Identities = 33/80 (41%), Positives = 46/80 (57%)
Frame = +3
Query: 1007 RFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEF 1066
+ + Y+ LG+ S DHSLF IL+YVDD+IL + Q + +KL+ +F
Sbjct: 6 KLSSYLHILGYIQSAHDHSLFTKFRDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQF 185
Query: 1067 AMKDLGPLSYFLGISVTRHS 1086
+KDLG L YFLG+ V R S
Sbjct: 186 RIKDLGTLKYFLGLEVARSS 245
>TC9337 similar to UP|PME_PRUPE (Q43062) Pectinesterase PPE8B precursor
(Pectin methylesterase) (PE) , partial (54%)
Length = 1145
Score = 63.5 bits (153), Expect = 2e-10
Identities = 27/44 (61%), Positives = 34/44 (76%)
Frame = +3
Query: 455 RNNFFCQSCQLGKQIKLPFYESLSSTLLPFDIVHSDIWTSPILS 498
R+N C SC LGK ++LPF S + TL PFDI+HSD+WTSP+LS
Sbjct: 1014 RSNSVCDSCVLGKHVRLPFSSSETITLRPFDILHSDLWTSPVLS 1145
>BP033602
Length = 533
Score = 63.5 bits (153), Expect = 2e-10
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = +3
Query: 427 IWHNRLGHPGVSILNSLHRNNSILCNKFRNNFFCQSCQLGKQIKLPFYESLSSTLLPFDI 486
+WHNRLGHP L L + + N ++ C+SC L K + P+Y PF +
Sbjct: 276 LWHNRLGHPNFQYLRHLFPD--LFKNVNCSSLECESCVLAKNQRAPYYSQPYHASRPFYL 449
Query: 487 VHSDIW-TSPILSSGGHHYYILFLDDFT 513
+HSD+W S I + G +++ F+DD T
Sbjct: 450 IHSDVWGPSKITTQFGKRWFVTFIDDHT 533
>AV767042
Length = 444
Score = 61.6 bits (148), Expect = 8e-10
Identities = 29/48 (60%), Positives = 37/48 (76%)
Frame = -3
Query: 915 NGSNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFL 962
N Q GVDC +TFSPVVKPA IRTV +IALS+SW + QL+V+N ++
Sbjct: 361 NPPMQTAGVDCNKTFSPVVKPAPIRTVFTIALSRSWPIPQLNVQNLWI 218
>AV427921
Length = 284
Score = 57.8 bits (138), Expect = 1e-08
Identities = 30/88 (34%), Positives = 46/88 (52%)
Frame = +1
Query: 579 HTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKKLALQTPTT 638
+T QNG ERK RTI N++R+LL + LP SF A+ + ++LN PT + P
Sbjct: 19 YTPQQNGVSERKNRTILNMVRSLLTMSGLPKSFLPEAVMWSLHILNRSPTLVVQNMMPEE 198
Query: 639 ILYQKSPSYSHLKVFGCLCFPLIPSTTR 666
+ P+ H ++ CL + +P R
Sbjct: 199 AWSGRQPAVDHFRISRCLAYAHVPDQKR 282
>AV769206
Length = 536
Score = 54.3 bits (129), Expect = 1e-07
Identities = 40/112 (35%), Positives = 52/112 (45%), Gaps = 6/112 (5%)
Frame = -3
Query: 668 KLQARSTPCVFLGYPSNHRGYKCFELSSRKIIISRHVIFDENTFPFSNSNIPESSCYNFL 727
KL S CVF+GY NH+GYKC + S R I IS+ V+F E+ FP+ + E++
Sbjct: 510 KLSLHSKECVFIGYSINHKGYKCLDQSGR-IYISKDVLFHEHRFPYPSLFPDETTS---- 346
Query: 728 DTSDTPFPYHLFQHTSNLPTNEPNSHDQPPTTTAT------PLTTPYSINTT 773
TS FP L T SH PP ++ T P S N T
Sbjct: 345 STSAEFFP---------LSTIPIVSHTTPPALASSGFSSLGSATLPSSFNPT 217
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 53.5 bits (127), Expect = 2e-07
Identities = 29/88 (32%), Positives = 47/88 (52%), Gaps = 1/88 (1%)
Frame = +2
Query: 1008 FTDYVATLGFSHSVCDHSLFIYHSGD-DTAYILLYVDDIILTASSDTLRQSIMSKLNSEF 1066
F ++ +LG++ DH + D D +LLYVDD+++ + Q + ++L EF
Sbjct: 2 FDSFIMSLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREF 181
Query: 1067 AMKDLGPLSYFLGISVTRHSDDTKAKLS 1094
MKDLGP + LG+ + R D + LS
Sbjct: 182 DMKDLGPANKILGMQIHRDRKDRRIWLS 265
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.134 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,629,819
Number of Sequences: 28460
Number of extensions: 498852
Number of successful extensions: 5881
Number of sequences better than 10.0: 494
Number of HSP's better than 10.0 without gapping: 4518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5329
length of query: 1333
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1232
effective length of database: 2,023,140
effective search space: 2492508480
effective search space used: 2492508480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Medicago: description of AC146720.2