TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146719.6 - phase: 0 /pseudo
         (312 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP055603                                                               29  0.90
TC16626 similar to UP|Q9LX30 (Q9LX30) Protein kinase like, parti...    28  1.5
TC11361                                                                27  3.4
TC8723 homologue to UP|TBB1_LUPAL (P37392) Tubulin beta-1 chain,...    27  4.4
TC14417 homologue to UP|AAR23806 (AAR23806) Initiation factor eI...    27  5.8
TC9140 homologue to UP|TBB3_PEA (P29502) Tubulin beta-3 chain (F...    26  7.6
TC14531                                                                26  7.6
TC9375 homologue to PIR|JA0049|JA0049 Tubulin beta-2 chain - soy...    26  7.6

>BP055603 
          Length = 467

 Score = 29.3 bits (64), Expect = 0.90
 Identities = 17/47 (36%), Positives = 24/47 (50%), Gaps = 6/47 (12%)
 Frame = -1

Query: 224 LCLSVLQMHLVCLWST*IAFFMHFWT---VSWLF---LLMTF*FTPR 264
           LC S++Q+ ++  WST I      WT   V WL    LL+    +PR
Sbjct: 233 LCYSIVQIMMLVSWSTTIVTLTRXWTPFVVDWLLSIVLLLAVCVSPR 93


>TC16626 similar to UP|Q9LX30 (Q9LX30) Protein kinase like, partial (6%)
          Length = 625

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 15/35 (42%), Positives = 23/35 (64%)
 Frame = +2

Query: 223 KLCLSVLQMHLVCLWST*IAFFMHFWTVSWLFLLM 257
           +LC+SVLQ++L+   S  I  F  F+  +WL L+M
Sbjct: 407 RLCISVLQLYLIPPLS--ILLFSVFFFSTWLVLMM 505


>TC11361 
          Length = 549

 Score = 27.3 bits (59), Expect = 3.4
 Identities = 13/29 (44%), Positives = 15/29 (50%)
 Frame = -2

Query: 208 CRRQLLERGMHIMSIKLCLSVLQMHLVCL 236
           CRR +  R   +   KLCL  LQ HL  L
Sbjct: 290 CRRSIWSRIWELCMRKLCLKHLQQHLALL 204


>TC8723 homologue to UP|TBB1_LUPAL (P37392) Tubulin beta-1 chain, complete
          Length = 1689

 Score = 26.9 bits (58), Expect = 4.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 275  WFCKCSKRRSFMLNYLSVNS 294
            W+C  S+ RSFML   SVNS
Sbjct: 1391 WYCWYSETRSFMLLSASVNS 1332


>TC14417 homologue to UP|AAR23806 (AAR23806) Initiation factor eIF4A-15,
           complete
          Length = 1563

 Score = 26.6 bits (57), Expect = 5.8
 Identities = 14/37 (37%), Positives = 22/37 (58%)
 Frame = +3

Query: 254 FLLMTF*FTPRLRKNMLSI*RWFCKCSKRRSFMLNYL 290
           FLLM    +P + K+M+++ +W CK     +FML  L
Sbjct: 159 FLLMGKISSPHMMKSMIALTQWDCKKIF*EAFMLMVL 269


>TC9140 homologue to UP|TBB3_PEA (P29502) Tubulin beta-3 chain (Fragment),
           partial (34%)
          Length = 797

 Score = 26.2 bits (56), Expect = 7.6
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 275 WFCKCSKRRSFMLNYLSVNS 294
           W+C  S  RSFML   SVNS
Sbjct: 396 WYCWYSDTRSFMLLSASVNS 337


>TC14531 
          Length = 535

 Score = 26.2 bits (56), Expect = 7.6
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 274 RWFCKCSKRRSFMLNYLSVN 293
           +W+C+CSK+ S + N   ++
Sbjct: 457 KWYCQCSKQTSILANITHIS 398


>TC9375 homologue to PIR|JA0049|JA0049 Tubulin beta-2 chain - soybean
           {Glycine max;} , partial (15%)
          Length = 699

 Score = 26.2 bits (56), Expect = 7.6
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 275 WFCKCSKRRSFMLNYLSVNS 294
           W+C  S  RSFML   SVNS
Sbjct: 153 WYCWYSATRSFMLLSASVNS 94


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.378    0.167    0.656 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,090,959
Number of Sequences: 28460
Number of extensions: 95853
Number of successful extensions: 1967
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1468
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 474
Number of HSP's gapped (non-prelim): 1561
length of query: 312
length of database: 4,897,600
effective HSP length: 90
effective length of query: 222
effective length of database: 2,336,200
effective search space: 518636400
effective search space used: 518636400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.7 bits)
S2: 55 (25.8 bits)