TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146712.3 - phase: 0 /pseudo
         (276 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP029912                                                               27  3.8
TC18493 similar to UP|Q948T9 (Q948T9) Respiratory burst oxidase ...    27  5.0
TC10832 weakly similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-ric...    26  6.5
TC8035 UP|GLN1_LOTJA (Q42899) Glutamine synthetase, cytosolic is...    26  8.4

>BP029912 
          Length = 559

 Score = 26.9 bits (58), Expect = 3.8
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +3

Query: 78  HLFPFSLRD---RASAWFHSLEVGSITSWDGMRRAFLARFSPHLKPLNLEIKSHG 129
           HL  +S+     R   + H+L++    SW+ + +  L   S H++   LE++ HG
Sbjct: 258 HLIEYSVETQNHRLHLFLHALQIKPGQSWEEI*QVRLPYKSHHIRHRLLELRPHG 422


>TC18493 similar to UP|Q948T9 (Q948T9) Respiratory burst oxidase homolog,
           partial (15%)
          Length = 553

 Score = 26.6 bits (57), Expect = 5.0
 Identities = 20/74 (27%), Positives = 32/74 (43%)
 Frame = +2

Query: 118 LKPLNLEIKSHGLIKKMGSLSMKRGRVSRKSLDFVPTMAWKSGL*STPFNGLSYTTKMSV 177
           LK   +EIKSHG I+   +        S +S+D  P     S +  +    LS      +
Sbjct: 5   LKACKMEIKSHGWIRGSLAAIAMAAVTSSRSIDTNPEQLIPSNVSGS*QKTLSLKVGRRL 184

Query: 178 DAAAGGSLMNKNYT 191
            +A  G  + +NY+
Sbjct: 185 RSALTGWQLRENYS 226


>TC10832 weakly similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-rich protein,
           partial (30%)
          Length = 539

 Score = 26.2 bits (56), Expect = 6.5
 Identities = 21/57 (36%), Positives = 26/57 (44%), Gaps = 10/57 (17%)
 Frame = +1

Query: 212 PSPLLLP----------LRKRQVYTKSLNITTLLLRLKL*PKNSKNLMLMLSHLLLH 258
           P PLLLP          L   +V  K L    LLL L+  P   + L+L   +LLLH
Sbjct: 238 PPPLLLPAAVPAAAALLLSGGKVLLKQLGEVDLLLLLRELPLLLRELLLPQGNLLLH 408


>TC8035 UP|GLN1_LOTJA (Q42899) Glutamine synthetase, cytosolic isozyme
           (Glutamate--ammonia ligase) (GS1) , complete
          Length = 1468

 Score = 25.8 bits (55), Expect = 8.4
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -2

Query: 175 MSVDAAAGGSLMNKNYTEAYALMKTWLRITTNGPTREPSPLLL 217
           M V      SL++ N T  ++L   W R TTN P   P  L L
Sbjct: 603 MCVHNITAKSLISSNTTVVWSL---WSRETTNRPPNRPVDLFL 484


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,636,980
Number of Sequences: 28460
Number of extensions: 62826
Number of successful extensions: 400
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of query: 276
length of database: 4,897,600
effective HSP length: 89
effective length of query: 187
effective length of database: 2,364,660
effective search space: 442191420
effective search space used: 442191420
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)