TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146711.8 + phase: 0 
         (207 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP053476                                                              103  2e-23
BP081623                                                               65  1e-11
AU089102                                                               64  2e-11
BP030332                                                               62  7e-11
TC19836                                                                49  5e-07
AV769545                                                               39  6e-04
BP066774                                                               37  0.002
TC20231 similar to UP|Q9SKQ4 (Q9SKQ4) At2g21090 protein, partial...    37  0.002
AV413186                                                               31  0.18
AV427280                                                               31  0.18
AV771137                                                               27  1.9
TC14081 similar to UP|RCA_PHAAU (O98997) Ribulose bisphosphate c...    27  2.5
TC7881                                                                 27  3.3
CB829385                                                               26  4.3
AV773273                                                               26  4.3
TC11321 weakly similar to UP|Q9LKP0 (Q9LKP0) RNA-dependent RNA p...    26  5.7
TC16510 similar to UP|Q9FLL5 (Q9FLL5) Similarity to myosin heavy...    26  5.7
AV425299                                                               25  9.7
TC15195 similar to UP|Q8S8F8 (Q8S8F8) Expressed protein, partial...    25  9.7
TC15051 similar to UP|Q41440 (Q41440) Mitochondrial processing p...    25  9.7

>BP053476 
          Length = 514

 Score =  103 bits (258), Expect = 2e-23
 Identities = 55/126 (43%), Positives = 78/126 (61%)
 Frame = -3

Query: 76  WDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISEMLHELIEKVIT 135
           W +V  ++ +     +KKTP  S V++   V+ F  GD SHP++ ++  +L ++ E +  
Sbjct: 512 WTDVQTIRKSMLQDGVKKTPGYSLVELANRVYEFTLGDRSHPQSQDVYALLEKITELLKL 333

Query: 136 LGYNPDTKFVLQDLEEEKKISALYYHSEKLAIAFALWKTCGKNTAIRIFKNLRVCGDCHS 195
            GY P T+ VL D+EEE+K  AL YHSEK+AIAF L  T    T IR+ KNLRVC DCH 
Sbjct: 332 EGYVPRTENVLADIEEEEKEPALSYHSEKVAIAFMLLNT-APGTPIRVMKNLRVCADCHM 156

Query: 196 WIKFVS 201
            I+ +S
Sbjct: 155 AIQLIS 138


>BP081623 
          Length = 461

 Score = 64.7 bits (156), Expect = 1e-11
 Identities = 27/85 (31%), Positives = 48/85 (55%)
 Frame = -2

Query: 29  WRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRD 88
           W  LL AC+I+G+V +     + + +  P+  G +ILL N+YA   +WD+  +++   + 
Sbjct: 457 WGALLGACRIYGDVGLGRWAAEHLFELKPQHCGYYILLANMYAEIERWDDANKVRQLMKS 278

Query: 89  LRLKKTPAMSWVDIDREVHTFMAGD 113
              KK P  SWV +  ++H F+ G+
Sbjct: 277 RGAKKNPGCSWVKVGDKMHAFLVGE 203


>AU089102 
          Length = 480

 Score = 63.5 bits (153), Expect = 2e-11
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
 Frame = +2

Query: 1   MIDLLGRAKRFEEATMLIEE-GKNPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRD 59
           ++DL GRA R +E   +IE  G    +  W  LL  C +HG  ++ +    K+L     +
Sbjct: 167 LVDLCGRAGRLKEXFYIIEGLGVKLSLSVWGPLLAGCNVHGNADIGKLVTTKILKVEHEN 346

Query: 60  GGTHILLTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSWVDI 102
            GT+ LL+N+YAS   W     +     D  LKK P   W+++
Sbjct: 347 AGTYSLLSNMYASXRXWKXXAPVXMKMNDKGLKKQPRCXWIEV 475


>BP030332 
          Length = 466

 Score = 62.0 bits (149), Expect = 7e-11
 Identities = 32/76 (42%), Positives = 46/76 (60%)
 Frame = -1

Query: 126 LHELIEKVITLGYNPDTKFVLQDLEEEKKISALYYHSEKLAIAFALWKTCGKNTAIRIFK 185
           L E + ++   GY PD   V  D E ++K S L  HSEK+A+AF L  +  +   I I K
Sbjct: 460 LEEXVSRLKLEGYEPDLNQVFLDFESDEKESQLVLHSEKVALAFGL-LSLPQGLPIHIVK 284

Query: 186 NLRVCGDCHSWIKFVS 201
           NLR+C DCH++++ VS
Sbjct: 283 NLRICCDCHTFMQLVS 236


>TC19836 
          Length = 464

 Score = 49.3 bits (116), Expect = 5e-07
 Identities = 24/78 (30%), Positives = 42/78 (53%)
 Frame = +2

Query: 24  PDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMK 83
           P    W +L++ACK+HG +++AE    +++   P +   + LL  IYA  G W +  ++ 
Sbjct: 20  PSTRIWSSLVSACKLHGRLDIAEMLGPQLIRSEPDNAANYTLLNMIYAEHGHWLHKEQVM 199

Query: 84  SAGRDLRLKKTPAMSWVD 101
            A +  RLKK    S ++
Sbjct: 200 EAMKLQRLKKCYGFSRIE 253


>AV769545 
          Length = 536

 Score = 38.9 bits (89), Expect = 6e-04
 Identities = 19/53 (35%), Positives = 33/53 (61%)
 Frame = -2

Query: 81  EMKSAGRDLRLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISEMLHELIEKV 133
           +++S  ++ RLKK    S V++  EVH+F+A D  H  + +I E+L +L  K+
Sbjct: 499 KLRSLIKENRLKKVLGQSMVELKNEVHSFVASDRFHDESDQIFEVLRKLDVKM 341


>BP066774 
          Length = 516

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 20/54 (37%), Positives = 29/54 (53%)
 Frame = -1

Query: 148 DLEEEKKISALYYHSEKLAIAFALWKTCGKNTAIRIFKNLRVCGDCHSWIKFVS 201
           ++ E  K      HSE+ AIAF L  +      I + KNL +C  CH+ +KF+S
Sbjct: 501 NIMEASKXDIFCGHSERQAIAFGLLNSA-PGMPIWVTKNLYMCQSCHNIVKFIS 343


>TC20231 similar to UP|Q9SKQ4 (Q9SKQ4) At2g21090 protein, partial (5%)
          Length = 550

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 14/39 (35%), Positives = 24/39 (60%)
 Frame = +3

Query: 88  DLRLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISEML 126
           ++R++K  A++W++I+ +VH F   D SHP    I   L
Sbjct: 51  EIRVRKDQALTWIEIENKVHAFTVSDGSHPLKETIYSSL 167


>AV413186 
          Length = 398

 Score = 30.8 bits (68), Expect = 0.18
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +1

Query: 17  LIEEGKNPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQ--APRDGGTHILLTNIYASAG 74
           +I  G  P+   +  LLNAC + G V+   +F K M  +     D   +  LT++   AG
Sbjct: 154 MIRSGVEPNRATFVVLLNACSLSGLVQEGLQFFKFMTSEFGVVPDQEHYACLTDLLVRAG 333

Query: 75  KWDNVIE 81
            +D  ++
Sbjct: 334 YFDESVK 354


>AV427280 
          Length = 268

 Score = 30.8 bits (68), Expect = 0.18
 Identities = 14/47 (29%), Positives = 28/47 (58%)
 Frame = +3

Query: 16  MLIEEGKNPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGT 62
           M+ E+G +PD+  +R  +N+     ++E     M+K+L++  R+G T
Sbjct: 126 MMKEDGVSPDIFSYRVCINSYGARSDLEN----MEKLLEEIEREGHT 254


>AV771137 
          Length = 551

 Score = 27.3 bits (59), Expect = 1.9
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 176 GKNTAIRIFKNLRVCGDCHS 195
           GKNTAI++F+  +V G+C S
Sbjct: 40  GKNTAIKLFQEKQV*GECWS 99


>TC14081 similar to UP|RCA_PHAAU (O98997) Ribulose bisphosphate
           carboxylase/oxygenase activase, chloroplast precursor
           (RuBisCO activase) (RA), partial (98%)
          Length = 1625

 Score = 26.9 bits (58), Expect = 2.5
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +2

Query: 18  IEEGKNPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIY 70
           I+E K  D  +WR L        +     K M   L QAP++ GTH  + + Y
Sbjct: 239 IDESKQTDGDRWRGLAYDISDDQQDITRGKGMVDPLFQAPQNAGTHYAVMSSY 397


>TC7881 
          Length = 1321

 Score = 26.6 bits (57), Expect = 3.3
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -2

Query: 176  GKNTAIRIFKNLRVCGDCHSWIKFVSLL 203
            GKNTAI++F+  +V G+C  W   ++LL
Sbjct: 1152 GKNTAIKLFQENQV*GEC--W*HSLTLL 1075


>CB829385 
          Length = 400

 Score = 26.2 bits (56), Expect = 4.3
 Identities = 11/29 (37%), Positives = 17/29 (57%)
 Frame = +1

Query: 114 LSHPRAHEISEMLHELIEKVITLGYNPDT 142
           ++HP   E + +L   +EKVI + Y P T
Sbjct: 235 VAHPNHVEYANLLLPTLEKVIIVDYKPST 321


>AV773273 
          Length = 356

 Score = 26.2 bits (56), Expect = 4.3
 Identities = 12/31 (38%), Positives = 16/31 (50%)
 Frame = -3

Query: 165 LAIAFALWKTCGKNTAIRIFKNLRVCGDCHS 195
           LAIA+ L         +   +  RVCGDCH+
Sbjct: 354 LAIAYGLT*YSTHAHLLESLRTFRVCGDCHN 262


>TC11321 weakly similar to UP|Q9LKP0 (Q9LKP0) RNA-dependent RNA polymerase,
           partial (10%)
          Length = 617

 Score = 25.8 bits (55), Expect = 5.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 185 KNLRVCGDCHSWIKFVSLLTGEI 207
           K  RVCG    W K + LL G++
Sbjct: 160 KGKRVCGGRKEWKKTIGLLNGQV 92


>TC16510 similar to UP|Q9FLL5 (Q9FLL5) Similarity to myosin heavy chain,
           partial (6%)
          Length = 489

 Score = 25.8 bits (55), Expect = 5.7
 Identities = 10/17 (58%), Positives = 14/17 (81%)
 Frame = -1

Query: 146 LQDLEEEKKISALYYHS 162
           +Q LE+EKKI  LYY++
Sbjct: 294 IQGLEKEKKIQELYYYA 244


>AV425299 
          Length = 323

 Score = 25.0 bits (53), Expect = 9.7
 Identities = 14/49 (28%), Positives = 26/49 (52%), Gaps = 1/49 (2%)
 Frame = +3

Query: 5   LGRAKRFEEA-TMLIEEGKNPDVIQWRTLLNACKIHGEVEMAEKFMKKM 52
           +G  +R +EA  +L  +G  PD+  + +++      G+ +  E  MKKM
Sbjct: 66  VGNLERAKEAFEVLTRKGFQPDIKVYNSMIMGYVNAGDPKAGESLMKKM 212


>TC15195 similar to UP|Q8S8F8 (Q8S8F8) Expressed protein, partial (39%)
          Length = 623

 Score = 25.0 bits (53), Expect = 9.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 157 ALYYHSEKLAIAFALWKTCGKNTAIRIFKNLRVCGDCH 194
           ++Y  S    ++F LW  C     + IFKN     D H
Sbjct: 253 SIYRLSLLTTMSFGLWALCIMIVLLNIFKNYCSLSDTH 366


>TC15051 similar to UP|Q41440 (Q41440) Mitochondrial processing peptidase ,
           partial (52%)
          Length = 956

 Score = 25.0 bits (53), Expect = 9.7
 Identities = 14/57 (24%), Positives = 24/57 (41%)
 Frame = +2

Query: 12  EEATMLIEEGKNPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTN 68
           E   +L++  +NP  + W       K+  E+  A K  + +L +A    G    L N
Sbjct: 587 EMVELLVDIVRNPAFLDWEVNEQLLKVKAEIGEASKNPQDLLLEAVHSAGFSGALAN 757


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,711,492
Number of Sequences: 28460
Number of extensions: 44691
Number of successful extensions: 215
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of query: 207
length of database: 4,897,600
effective HSP length: 86
effective length of query: 121
effective length of database: 2,450,040
effective search space: 296454840
effective search space used: 296454840
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)