TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146711.3 - phase: 0 
         (61 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP084332                                                               28  0.27
TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela...    26  1.8
TC12051                                                                24  6.7
TC13040 weakly similar to UP|Q94KA9 (Q94KA9) Importin alpha 2, p...    23  8.7

>BP084332 
          Length = 368

 Score = 28.5 bits (62), Expect = 0.27
 Identities = 14/17 (82%), Positives = 15/17 (87%)
 Frame = +2

Query: 44 QNTIALSTTEAEYESAA 60
          Q+TIALST EAEY SAA
Sbjct: 32 QSTIALSTAEAEYISAA 82


>TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
          polyprotein from transposon TNT 1-94 [Contains:
          Protease ; Reverse transcriptase ; Endonuclease] ,
          partial (6%)
          Length = 498

 Score = 25.8 bits (55), Expect = 1.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 39 WSCRKQNTIALSTTEAEYESA 59
          W  R Q  +ALST EAE+ +A
Sbjct: 33 WPSRLQKCVALSTAEAEFIAA 95


>TC12051 
          Length = 629

 Score = 23.9 bits (50), Expect = 6.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 35  ALTGWSCRKQNTI 47
           A+ GW+C KQ TI
Sbjct: 564 AMLGWNCSKQKTI 526


>TC13040 weakly similar to UP|Q94KA9 (Q94KA9) Importin alpha 2, partial
           (14%)
          Length = 503

 Score = 23.5 bits (49), Expect = 8.7
 Identities = 10/17 (58%), Positives = 11/17 (63%)
 Frame = +2

Query: 24  STSGSCQFLEQALTGWS 40
           STS    FLE+ L GWS
Sbjct: 212 STSSEDLFLEKGLVGWS 262


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.332    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 975,902
Number of Sequences: 28460
Number of extensions: 9092
Number of successful extensions: 83
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of query: 61
length of database: 4,897,600
effective HSP length: 37
effective length of query: 24
effective length of database: 3,844,580
effective search space: 92269920
effective search space used: 92269920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 49 (23.5 bits)