TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146709.12 + phase: 0 /pseudo
         (609 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP041804                                                              159  1e-39
TC19928 similar to UP|O65620 (O65620) MYST1 protein (Fragment), ...    80  1e-32
AV427732                                                              125  2e-29
TC15646                                                               113  1e-25
AI967521                                                              110  9e-25
AV776547                                                               96  1e-20
BP066999                                                               30  1.1
TC10264 similar to UP|Q41498 (Q41498) U1snRNP-specific protein, ...    28  3.3

>BP041804 
          Length = 533

 Score =  159 bits (402), Expect = 1e-39
 Identities = 80/145 (55%), Positives = 103/145 (70%), Gaps = 1/145 (0%)
 Frame = -3

Query: 465 DDLIYTLGVNK-NKDWFYAHVTRNTENNTYEPTTWQIIFEHQHDLKSGNYTLQLALASAA 523
           +DL+YT+G +  +KDWF+A VTR  +NNTY+ TTW+I F   +   SG Y L+LALAS  
Sbjct: 531 EDLVYTVGTSDYSKDWFFAQVTRKKDNNTYQGTTWKINFNLDYVNTSGTYKLRLALASVH 352

Query: 524 DAYLQVRFNDRSVYPPHFATGHIGRIRGDNCIQRHGIHGLYRLFSIDVPSNLLLKGKNII 583
            A LQ+R N+    PP F++G IG+   +N I RHGIHGLY LFSIDV   LL++G N I
Sbjct: 351 AAELQIRINNSEANPPLFSSGVIGK---ENTIARHGIHGLYWLFSIDVQGTLLVQGNNTI 181

Query: 584 YLTQTNADTPFQGVMYDYIRLEQPP 608
           +LTQT   +PFQG++YDYIRLE PP
Sbjct: 180 FLTQTQNISPFQGILYDYIRLEGPP 106


>TC19928 similar to UP|O65620 (O65620) MYST1 protein (Fragment), partial
           (14%)
          Length = 676

 Score = 80.5 bits (197), Expect(2) = 1e-32
 Identities = 47/118 (39%), Positives = 55/118 (45%), Gaps = 31/118 (26%)
 Frame = -3

Query: 264 LNTASSENDNATLWSDAVQQLSKEVQSWPYDFPQSQDYFPPNQRGAVFGRLLVQDWY--- 320
           L T S      T     +  LS EV+SWPYDFPQSQD+FP  QRG V G+L V+D Y   
Sbjct: 596 LITNS*STQGVTYHCSLIN*LSNEVRSWPYDFPQSQDFFPSKQRGQVTGQLQVKDGYIHV 417

Query: 321 ----------------------------FEGGRYQYANNAYVGLALPGDAGSWQRESK 350
                                         G    Y +NAY+GL  PG+AGSWQ ESK
Sbjct: 416 NV*CTYNLWLR*Q*ITYMAS*ILGLVLFIRGKTSVYPSNAYIGLPFPGEAGSWQTESK 243



 Score = 77.0 bits (188), Expect(2) = 1e-32
 Identities = 31/47 (65%), Positives = 37/47 (77%)
 Frame = -1

Query: 349 SKGYQFWTQTDAKGYFKITNVVPGHYNLFGWVSGFIGDYKYNSTITI 395
           ++ YQFWT+TD  G FKI N+VPG YNL+ W+ GFIGDYKYN  ITI
Sbjct: 145 TQSYQFWTRTDENGNFKIENIVPGDYNLYAWIPGFIGDYKYNDIITI 5


>AV427732 
          Length = 352

 Score =  125 bits (315), Expect = 2e-29
 Identities = 64/116 (55%), Positives = 76/116 (65%)
 Frame = +3

Query: 288 VQSWPYDFPQSQDYFPPNQRGAVFGRLLVQDWYFEGGRYQYANNAYVGLALPGDAGSWQR 347
           VQ+WPY FP S+D+   + RG V GRLLV D Y        AN AYVGLA PGDA SWQR
Sbjct: 3   VQNWPYYFPASEDFPKADHRGNVSGRLLVLDRYIITDLIS-ANGAYVGLAPPGDACSWQR 179

Query: 348 ESKGYQFWTQTDAKGYFKITNVVPGHYNLFGWVSGFIGDYKYNSTITITPGGVIKL 403
           E K YQFWT+ D  G+F I+N+  G YNLF WV GFIGDY+ +  + IT    I+L
Sbjct: 180 ECKDYQFWTRADDNGFFTISNIRAGDYNLFAWVPGFIGDYRCDDFMKITS*SYIEL 347


>TC15646 
          Length = 547

 Score =  113 bits (282), Expect = 1e-25
 Identities = 57/111 (51%), Positives = 74/111 (66%)
 Frame = +2

Query: 498 WQIIFEHQHDLKSGNYTLQLALASAADAYLQVRFNDRSVYPPHFATGHIGRIRGDNCIQR 557
           WQI FE    ++   Y L++ALASA  A LQ+R ND +   P F TG IGR   +N I R
Sbjct: 2   WQIKFEVGSVVQGSTYKLRVALASATLAELQIRINDPNARRPVFTTGLIGR---ENSIAR 172

Query: 558 HGIHGLYRLFSIDVPSNLLLKGKNIIYLTQTNADTPFQGVMYDYIRLEQPP 608
           HG+ GLY L+ +++PS+LL+ G N +Y TQ    +PFQG+MYDYIRLE PP
Sbjct: 173 HGVRGLYWLYHVNIPSSLLIGGTNTMYFTQPRCTSPFQGIMYDYIRLEGPP 325


>AI967521 
          Length = 436

 Score =  110 bits (274), Expect = 9e-25
 Identities = 55/101 (54%), Positives = 66/101 (64%)
 Frame = +1

Query: 248 QEGETYKKVFGPVFVYLNTASSENDNATLWSDAVQQLSKEVQSWPYDFPQSQDYFPPNQR 307
           Q GE +KKVFGPVF+YLN+    +    LW DA  Q+  EVQSWPY FP S D+   ++R
Sbjct: 136 QAGEAWKKVFGPVFIYLNSTDDGSAVPNLWDDAKLQMLVEVQSWPYSFPDSDDFSKWDER 315

Query: 308 GAVFGRLLVQDWYFEGGRYQYANNAYVGLALPGDAGSWQRE 348
           G V GRLLV+D Y +   Y  A  AYVGLA PG+ GSWQ E
Sbjct: 316 GNVSGRLLVRDRYIDDD-YISAKGAYVGLAPPGEVGSWQEE 435


>AV776547 
          Length = 550

 Score = 96.3 bits (238), Expect = 1e-20
 Identities = 49/82 (59%), Positives = 60/82 (72%)
 Frame = -3

Query: 528 QVRFNDRSVYPPHFATGHIGRIRGDNCIQRHGIHGLYRLFSIDVPSNLLLKGKNIIYLTQ 587
           QV FN  +   P+F TG IG    D+ I RHGIHGL+RL+SI+V S+ L+ GKN IYL Q
Sbjct: 548 QVWFNGWNADYPYFTTGEIGN---DSAIARHGIHGLHRLYSINVASDQLVTGKNTIYLRQ 378

Query: 588 TNADTPFQGVMYDYIRLEQPPS 609
           + A +PFQGVMYDYIRLE PP+
Sbjct: 377 SIATSPFQGVMYDYIRLESPPT 312


>BP066999 
          Length = 413

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 467 LIYTLGVNKNKDWFYAHVTRNTENNTYEPTTWQIIFEHQHDLKSGNYTL 515
           LI   GV   + W +        NNT +   WQI+ EH++   +G+ +L
Sbjct: 39  LISNQGVKPXESWLWF----TNXNNTXKQKCWQILQEHRYSSPAGSLSL 173


>TC10264 similar to UP|Q41498 (Q41498) U1snRNP-specific protein, U1A,
           partial (92%)
          Length = 962

 Score = 28.5 bits (62), Expect = 3.3
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 20  LDSENQELDRGYFDVVWNEPGEQNLSKSTF 49
           +D+  QE+DRG+F+ +W E G  ++S + F
Sbjct: 724 VDNLCQEIDRGFFN-LWYEKGRNHISSTIF 810


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,816,954
Number of Sequences: 28460
Number of extensions: 153011
Number of successful extensions: 579
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of query: 609
length of database: 4,897,600
effective HSP length: 96
effective length of query: 513
effective length of database: 2,165,440
effective search space: 1110870720
effective search space used: 1110870720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)