TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146705.12 - phase: 0 /pseudo
         (811 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB827612                                                              124  5e-29
BG662087                                                               88  5e-18
AV427422                                                               74  9e-14
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi...    64  1e-10
AU089582                                                               47  5e-10
BF177840                                                               59  4e-09
BP055130                                                               49  2e-06
AV410603                                                               47  2e-05
TC18698                                                                37  0.010
TC14836 similar to UP|O24322 (O24322) Cysteine proteinase precur...    30  1.2
AV778124                                                               29  2.6
TC19020                                                                28  7.6
TC17102 UP|CAE45588 (CAE45588) Papain-like cysteine proteinase-l...    27  9.9
TC19449 similar to PIR|E86300|E86300 protein F3O9.30 [imported] ...    27  9.9

>CB827612 
          Length = 277

 Score =  124 bits (312), Expect = 5e-29
 Identities = 57/92 (61%), Positives = 73/92 (78%)
 Frame = +1

Query: 667 SCHLPVELEHKAYWAIRNLNLDPNLAGDKRKLQLNELEELRMDAYENARIYKERTKTWHD 726
           +CHLPVE+EH+AYWA+++ N +   AG +RKLQL +LEELR+ AYE++RIYKE+TK  HD
Sbjct: 1   ACHLPVEIEHRAYWAVKSCNXEMQQAGIERKLQLQQLEELRLGAYESSRIYKEKTKHXHD 180

Query: 727 KKIIKRHFKSGDLVLLFNSRLKLFPGKLRSRW 758
           K I ++ F  G  VLLFNSRLKL  GKLRS+W
Sbjct: 181 KMISRKEFSVGQQVLLFNSRLKLMAGKLRSKW 276


>BG662087 
          Length = 373

 Score = 88.2 bits (217), Expect = 5e-18
 Identities = 41/99 (41%), Positives = 63/99 (63%)
 Frame = +1

Query: 1   NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
           NKA  KD +PLP ID++++  + +     +D YSG+ QI +HP+D++KT F      + Y
Sbjct: 52  NKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDEDKTAFMTARVNYCY 231

Query: 61  RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSV 99
           + +PFGL NA AT+Q  M  +F D V + MEV++D+  V
Sbjct: 232 QTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIV 348


>AV427422 
          Length = 417

 Score = 73.9 bits (180), Expect = 9e-14
 Identities = 41/135 (30%), Positives = 72/135 (52%), Gaps = 1/135 (0%)
 Frame = +1

Query: 526 PSSFGNQYILVAVDYVSKWVEAIA-SPTNDAQVVIKMFKKVIFPRFGVPRVVISDGGSHF 584
           P S G + +LV VD +SK+   +       A+V+  +F + +    GVP  ++SD    F
Sbjct: 13  PKSKGYEAVLVVVDRLSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDRDPLF 192

Query: 585 ISRHFEKLLQKLGVRHKIATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTDWSNKLDDAL 644
           +S  +++L +  G + K++T YHP++ GQ EV NR ++  L   ++     W++ +  A 
Sbjct: 193 MSNFWKELFKMQGTKLKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSWAHWVPWAE 372

Query: 645 WAYRTAYKTPIGMTP 659
           + Y T+Y    G TP
Sbjct: 373 YWYNTSYHVSTGQTP 417


>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
           (Fragment), partial (10%)
          Length = 572

 Score = 63.9 bits (154), Expect = 1e-10
 Identities = 30/98 (30%), Positives = 54/98 (54%)
 Frame = +2

Query: 579 DGGSHFISRHFEKLLQKLGVRHKIATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTDWSN 638
           + G  F S+  +     +G++ + ++  HPQT+GQ E +N+ I   +++ +  +   W +
Sbjct: 8   ENGIQFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWID 187

Query: 639 KLDDALWAYRTAYKTPIGMTPFKLVYGKSCHLPVELEH 676
           +L   LW+Y T  ++ I  TPF L YG    LPVE+ +
Sbjct: 188 ELPIVLWSYNTMPQSSIKETPF*LTYGADTMLPVEISN 301


>AU089582 
          Length = 383

 Score = 47.0 bits (110), Expect(2) = 5e-10
 Identities = 26/74 (35%), Positives = 39/74 (52%)
 Frame = +2

Query: 560 KMFKKVIFPRFGVPRVVISDGGSHFISRHFEKLLQKLGVRHKIATPYHPQTSGQVEVSNR 619
           K++   I    GVP  +ISD G+ F S  +      LG R K++T +HPQT GQ E + +
Sbjct: 26  KIYLDEIVSLHGVPVSIISDRGAQFTSHFWRSFQTALGTRLKMSTAFHPQTDGQSERTIQ 205

Query: 620 QIKAILEKTVSTSR 633
            ++ +L   V   R
Sbjct: 206 ILEDMLRACVXDLR 247



 Score = 34.3 bits (77), Expect(2) = 5e-10
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 636 WSNKLDDALWAYRTAYKTPIGMTPFKLVYGKSCHLPV 672
           W   L    +AY  +Y++ I M PF+ +YG+ C  P+
Sbjct: 255 WDQYLSLMEFAYNNSYRSSI*MAPFEALYGRRCRSPI 365


>BF177840 
          Length = 410

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 30/99 (30%), Positives = 50/99 (50%)
 Frame = +2

Query: 576 VISDGGSHFISRHFEKLLQKLGVRHKIATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTD 635
           ++SD  + FIS  +  L  K+G +   +T  HPQT GQ EV N+ +  +L   +  +   
Sbjct: 17  IVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNLKM 196

Query: 636 WSNKLDDALWAYRTAYKTPIGMTPFKLVYGKSCHLPVEL 674
           W   L    +AY     +    +PF++VYG +   P++L
Sbjct: 197 WETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNPLTPLDL 313


>BP055130 
          Length = 567

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 32/112 (28%), Positives = 51/112 (44%), Gaps = 1/112 (0%)
 Frame = +2

Query: 530 GNQYILVAVDYVSKWVEAIASPTN-DAQVVIKMFKKVIFPRFGVPRVVISDGGSHFISRH 588
           G   I+V VD +SK+        N  +  V + F   I    G+PR ++SD    F S  
Sbjct: 179 GFTVIIVVVDRLSKYGHFAPHRANYTSSQVAETFVSTIVKLHGMPRAIVSDRDKAFTSAF 358

Query: 589 FEKLLQKLGVRHKIATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTDWSNKL 640
           ++   +  G    +++ YHPQT GQ E  N+ ++  L   V  +   W + L
Sbjct: 359 WKHFFKLHGTTLNMSSSYHPQTDGQTEALNKCLELYLRCFVHETPRLWVSYL 514


>AV410603 
          Length = 162

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 22/54 (40%), Positives = 31/54 (56%)
 Frame = +1

Query: 3  ATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFG 56
          +T KD FP+P +D++L+ L     F  LD  SG+ QI + P D+ KT F    G
Sbjct: 1  STVKDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRTHHG 162


>TC18698 
          Length = 808

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 21/57 (36%), Positives = 31/57 (53%)
 Frame = -2

Query: 46  QEKTTFTCPFGTFAYRRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGS 102
           ++KTT       + Y+ MP GL N   T+QR M  IF   + K +EV+++D  V  S
Sbjct: 807 KKKTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKSS 637


>TC14836 similar to UP|O24322 (O24322) Cysteine proteinase precursor ,
           partial (92%)
          Length = 1416

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 10/21 (47%), Positives = 16/21 (75%)
 Frame = +2

Query: 664 YGKSCHLPVELEHKAYWAIRN 684
           YGK+ + P+  ++KAYW I+N
Sbjct: 953 YGKAGYAPIRFKNKAYWIIKN 1015


>AV778124 
          Length = 515

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 403 NYQQKKKFFN-DLKHYYWDEPYLFRRGSDGIFRRC 436
           N +Q  KF N +  HYYWDE +L  + S  +   C
Sbjct: 117 NEKQLFKFININTDHYYWDENHLMSKLSSSLMLIC 13


>TC19020 
          Length = 438

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 412 NDLKHYYWDEPYLFRRGSDGIFRRCIPENEVSSILTH 448
           + L H+ W +   +RR    + RRC+PE E   I  H
Sbjct: 225 SSLSHFIWGQAQ-YRREWQWLLRRCLPEVEAHIIDIH 332


>TC17102 UP|CAE45588 (CAE45588) Papain-like cysteine proteinase-like protein
           1, complete
          Length = 1086

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 664 YGKSCHLPVELEHKAYWAIRN 684
           YG   + P+ ++ K YW I+N
Sbjct: 907 YGSESYAPIRMKQKPYWIIKN 969


>TC19449 similar to PIR|E86300|E86300 protein F3O9.30 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (24%)
          Length = 600

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/43 (34%), Positives = 21/43 (47%), Gaps = 2/43 (4%)
 Frame = -3

Query: 467 ILHSGFWWPSLFKDVHLFISKCDKCQR--TGSITKRNEMPLNN 507
           ++ S   WP+L     + IS C +C R   GSI   N  P +N
Sbjct: 154 MMPSSLKWPALSLLFQVLISPCRECTRFHNGSIRAMNMKPASN 26


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,716,354
Number of Sequences: 28460
Number of extensions: 211190
Number of successful extensions: 940
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of query: 811
length of database: 4,897,600
effective HSP length: 98
effective length of query: 713
effective length of database: 2,108,520
effective search space: 1503374760
effective search space used: 1503374760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)