TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146693.3 - phase: 0 /pseudo
         (634 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14274 weakly similar to GB|AAF79559.1|8778551|AC022464 F22G5.3...    30  0.90
TC14982 similar to UP|Q9FPI2 (Q9FPI2) At1g17620, partial (32%)         28  3.4
BI417739                                                               28  5.9
AV406952                                                               28  5.9
TC11279                                                                28  5.9
AW719924                                                               28  5.9
AV409261                                                               27  7.6

>TC14274 weakly similar to GB|AAF79559.1|8778551|AC022464 F22G5.35
           {Arabidopsis thaliana;} , partial (16%)
          Length = 1208

 Score = 30.4 bits (67), Expect = 0.90
 Identities = 18/53 (33%), Positives = 24/53 (44%), Gaps = 1/53 (1%)
 Frame = +1

Query: 327 PNSLPRLILS-PHTPKCLRPKSPKWPNKWPPLLKH*ESFPVNPKQTPKLMSTP 378
           P  LP   L  P TP+  RP  P+ P + P  L+H +  P  P + P     P
Sbjct: 277 PRDLPLQTLRYPQTPRRHRPPPPRRPPRPP*FLQHPQIHPPPPLRPPPRQDPP 435


>TC14982 similar to UP|Q9FPI2 (Q9FPI2) At1g17620, partial (32%)
          Length = 1036

 Score = 28.5 bits (62), Expect = 3.4
 Identities = 26/87 (29%), Positives = 36/87 (40%), Gaps = 3/87 (3%)
 Frame = +1

Query: 337 PHTPKCLRPKSPKWPNKWPPLLKH*ESFPVNPKQTPKLMSTPFLMGVVSWKGQLLKPKEL 396
           PH  +C R   P  P   P LL+H    P      P L+  P L   +    +  KP++ 
Sbjct: 235 PHHRRCWRRLLPPLPPPPPHLLRH---LPQTLLPQPHLLLNPLLQ--IRPHRRRHKPQQE 399

Query: 397 RERVL---GFLVRKMRNRLIRTRPLTH 420
           + R+L    F    +R R  R R  TH
Sbjct: 400 KHRILLPTHFHHHTLRRRRRRRRNHTH 480


>BI417739 
          Length = 591

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 11/23 (47%), Positives = 15/23 (64%)
 Frame = -3

Query: 58  LVPFPRSRFHHFMGRYEASIPCP 80
           + PFP S  HH + R++AS P P
Sbjct: 358 IFPFPDSCCHHLLFRFQASSPPP 290


>AV406952 
          Length = 441

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 17/55 (30%), Positives = 26/55 (46%), Gaps = 3/55 (5%)
 Frame = +1

Query: 327 PNSLPRLILSPHTPKCLRPK---SPKWPNKWPPLLKH*ESFPVNPKQTPKLMSTP 378
           P ++ R     HTP+ + PK   SP W  +  P + H    P+ P  TP ++  P
Sbjct: 7   PPNVKRSTDEGHTPEPVSPKSVASPPWEIEHIPPVTH----PIFPITTPSILPAP 159


>TC11279 
          Length = 455

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 14/37 (37%), Positives = 21/37 (55%)
 Frame = -1

Query: 313 PRTEKPNRISERLSPNSLPRLILSPHTPKCLRPKSPK 349
           PRTE+P +I++  +P SL  L+   H   C  P + K
Sbjct: 161 PRTERPKKITQLFAPVSLNSLV-GHHYHPCNPPNNEK 54


>AW719924 
          Length = 505

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 324 RLSPNSLPRLILSPHTPKCLRPKS 347
           R  P SLP + LSPHT +   PKS
Sbjct: 493 RREPPSLPYVRLSPHTARTKTPKS 422


>AV409261 
          Length = 355

 Score = 27.3 bits (59), Expect = 7.6
 Identities = 15/45 (33%), Positives = 19/45 (41%)
 Frame = +2

Query: 312 SPRTEKPNRISERLSPNSLPRLILSPHTPKCLRPKSPKWPNKWPP 356
           SP T   + ++   +  S P   L P TP      SP WP  W P
Sbjct: 230 SPPTPSTSPLASPATSPSPPHSSLPPWTPS----PSPPWPPPWQP 352


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.364    0.164    0.631 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,978,952
Number of Sequences: 28460
Number of extensions: 201579
Number of successful extensions: 2949
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1688
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 1221
Number of HSP's gapped (non-prelim): 1884
length of query: 634
length of database: 4,897,600
effective HSP length: 96
effective length of query: 538
effective length of database: 2,165,440
effective search space: 1165006720
effective search space used: 1165006720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 58 (26.9 bits)