
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146683.17 - phase: 0
(494 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV778575 45 4e-05
AV410435 44 6e-05
TC14419 similar to UP|BAD10349 (BAD10349) Type 1 membrane protei... 36 0.016
TC8891 similar to GB|AAP68279.1|31711846|BT008840 At1g72680 {Ara... 28 2.6
TC8273 UP|BAD11134 (BAD11134) Glutamate-rich protein, complete 28 3.4
AV406960 27 10.0
>AV778575
Length = 472
Score = 44.7 bits (104), Expect = 4e-05
Identities = 24/31 (77%), Positives = 24/31 (77%)
Frame = +3
Query: 332 CEKKMVFLIFDGLLGFAMQV*LQLRLMAPYA 362
C KKMVFLIF GLL MQV*L LRLMAP A
Sbjct: 378 CVKKMVFLIFGGLLVIDMQV*LHLRLMAPRA 470
>AV410435
Length = 362
Score = 43.9 bits (102), Expect = 6e-05
Identities = 28/54 (51%), Positives = 32/54 (58%)
Frame = +2
Query: 1 DFESRGVVEENVHLGLYHGTPSLRSSFTAQAIKTVSAWDNSSLSTGEFRYSLST 54
D E+R V EE V LGL +GT S R SFTAQA+K VS S +S E Y T
Sbjct: 122 DIENRCVAEEGVFLGLQNGTHSRRYSFTAQAMKAVS---GSFVSQSEQGYLTDT 274
>TC14419 similar to UP|BAD10349 (BAD10349) Type 1 membrane protein-like,
partial (25%)
Length = 1585
Score = 35.8 bits (81), Expect = 0.016
Identities = 38/127 (29%), Positives = 63/127 (48%), Gaps = 1/127 (0%)
Frame = +1
Query: 134 ENALRSSVDTATSFIDSVVKNATTSADNAFSKVFSAADQTGDLANKKITSFSSEIDGVTS 193
+NA+ SS +T+ IDS N +N S VFS +Q D+ +++I+ FSS I G S
Sbjct: 373 DNAIFSSSIRSTNIIDSEKVNIQLPDENEVS-VFSLDEQLEDITDREISDFSSLIGG--S 543
Query: 194 KAPGLVIDVLRRTVVAVESSLSSGASYVVYLYGSA-KEFIPAEIRDTVNIYEDKAAQVLR 252
AP D L + L++G S +++ A + F+ + T N+ +A Q+
Sbjct: 544 YAP----DALEPLNGVLTIPLANGNSVNLHMSKKAERNFVVGLLSLTRNV--KRAIQMHD 705
Query: 253 PVGSATQ 259
+ +TQ
Sbjct: 706 DLSQSTQ 726
>TC8891 similar to GB|AAP68279.1|31711846|BT008840 At1g72680 {Arabidopsis
thaliana;} , complete
Length = 1636
Score = 28.5 bits (62), Expect = 2.6
Identities = 36/122 (29%), Positives = 49/122 (39%), Gaps = 18/122 (14%)
Frame = -3
Query: 60 VDFAKQSTEVSE-PLVAPTVHPEAILSSTDITSGKIESVPSLIKGGNESLAATKASATEV 118
+ FA Q++ +S V PT PE +L + G I LI GN + A T
Sbjct: 1046 ISFATQNSIMSRISFVPPTPLPETVLLPMIRSPGWI-----LISPGNPTRARTPNDFNSA 882
Query: 119 FAGINETFSDSI-----NKGENALRSSVD------------TATSFIDSVVKNATTSADN 161
G E D++ N NAL SS +A+SF+D +V T N
Sbjct: 881 M*GSKE*GPDAVSTIKSNDLANALISS*SDETTNRSAPSKLSASSFLDILVLKTVTFKPN 702
Query: 162 AF 163
AF
Sbjct: 701 AF 696
>TC8273 UP|BAD11134 (BAD11134) Glutamate-rich protein, complete
Length = 923
Score = 28.1 bits (61), Expect = 3.4
Identities = 25/102 (24%), Positives = 42/102 (40%)
Frame = -1
Query: 69 VSEPLVAPTVHPEAILSSTDITSGKIESVPSLIKGGNESLAATKASATEVFAGINETFSD 128
++ +VA TV A+LSS D +S +T A++ + ++ T
Sbjct: 515 IATSVVASTVVSAALLSSDDFSS------------------STGAASVAAVSLVSSTIGS 390
Query: 129 SINKGENALRSSVDTATSFIDSVVKNATTSADNAFSKVFSAA 170
S SSV +A+ + SV +TSA + S A+
Sbjct: 389 SFTSSGFTSGSSVFSASGLVSSVTSLVSTSAGASVSGAAGAS 264
>AV406960
Length = 425
Score = 26.6 bits (57), Expect = 10.0
Identities = 35/146 (23%), Positives = 59/146 (39%), Gaps = 2/146 (1%)
Frame = +2
Query: 106 ESLAATKASATEVFAGINETFSDSINKGENALRSSVDTATSFIDSVVKNATTSADNAFSK 165
ESL ATK + EVF+G ++ KGE I++VV T F K
Sbjct: 56 ESLPATKHPSDEVFSG------STVKKGE-------------IEAVV--IATGVHTFFGK 172
Query: 166 VFSAADQTGDLAN--KKITSFSSEIDGVTSKAPGLVIDVLRRTVVAVESSLSSGASYVVY 223
D T + + K +T+ + + S A G+VI+++ + + +V
Sbjct: 173 AAHLVDSTNQVGHFQKVLTAIGNFC--ICSIAVGIVIELIVMYPIQHRKYRDGIDNLLVL 346
Query: 224 LYGSAKEFIPAEIRDTVNIYEDKAAQ 249
L G +P + T+ I + +Q
Sbjct: 347 LIGGIPIAMPTVLSVTMAIGSHRLSQ 424
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.333 0.143 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,778,464
Number of Sequences: 28460
Number of extensions: 80233
Number of successful extensions: 573
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of query: 494
length of database: 4,897,600
effective HSP length: 94
effective length of query: 400
effective length of database: 2,222,360
effective search space: 888944000
effective search space used: 888944000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 57 (26.6 bits)
Medicago: description of AC146683.17