TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146683.17 - phase: 0 
         (494 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV778575                                                               45  4e-05
AV410435                                                               44  6e-05
TC14419 similar to UP|BAD10349 (BAD10349) Type 1 membrane protei...    36  0.016
TC8891 similar to GB|AAP68279.1|31711846|BT008840 At1g72680 {Ara...    28  2.6
TC8273 UP|BAD11134 (BAD11134) Glutamate-rich protein, complete         28  3.4
AV406960                                                               27  10.0

>AV778575 
          Length = 472

 Score = 44.7 bits (104), Expect = 4e-05
 Identities = 24/31 (77%), Positives = 24/31 (77%)
 Frame = +3

Query: 332 CEKKMVFLIFDGLLGFAMQV*LQLRLMAPYA 362
           C KKMVFLIF GLL   MQV*L LRLMAP A
Sbjct: 378 CVKKMVFLIFGGLLVIDMQV*LHLRLMAPRA 470


>AV410435 
          Length = 362

 Score = 43.9 bits (102), Expect = 6e-05
 Identities = 28/54 (51%), Positives = 32/54 (58%)
 Frame = +2

Query: 1   DFESRGVVEENVHLGLYHGTPSLRSSFTAQAIKTVSAWDNSSLSTGEFRYSLST 54
           D E+R V EE V LGL +GT S R SFTAQA+K VS    S +S  E  Y   T
Sbjct: 122 DIENRCVAEEGVFLGLQNGTHSRRYSFTAQAMKAVS---GSFVSQSEQGYLTDT 274


>TC14419 similar to UP|BAD10349 (BAD10349) Type 1 membrane protein-like,
           partial (25%)
          Length = 1585

 Score = 35.8 bits (81), Expect = 0.016
 Identities = 38/127 (29%), Positives = 63/127 (48%), Gaps = 1/127 (0%)
 Frame = +1

Query: 134 ENALRSSVDTATSFIDSVVKNATTSADNAFSKVFSAADQTGDLANKKITSFSSEIDGVTS 193
           +NA+ SS   +T+ IDS   N     +N  S VFS  +Q  D+ +++I+ FSS I G  S
Sbjct: 373 DNAIFSSSIRSTNIIDSEKVNIQLPDENEVS-VFSLDEQLEDITDREISDFSSLIGG--S 543

Query: 194 KAPGLVIDVLRRTVVAVESSLSSGASYVVYLYGSA-KEFIPAEIRDTVNIYEDKAAQVLR 252
            AP    D L      +   L++G S  +++   A + F+   +  T N+   +A Q+  
Sbjct: 544 YAP----DALEPLNGVLTIPLANGNSVNLHMSKKAERNFVVGLLSLTRNV--KRAIQMHD 705

Query: 253 PVGSATQ 259
            +  +TQ
Sbjct: 706 DLSQSTQ 726


>TC8891 similar to GB|AAP68279.1|31711846|BT008840 At1g72680 {Arabidopsis
            thaliana;} , complete
          Length = 1636

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 36/122 (29%), Positives = 49/122 (39%), Gaps = 18/122 (14%)
 Frame = -3

Query: 60   VDFAKQSTEVSE-PLVAPTVHPEAILSSTDITSGKIESVPSLIKGGNESLAATKASATEV 118
            + FA Q++ +S    V PT  PE +L     + G I     LI  GN + A T       
Sbjct: 1046 ISFATQNSIMSRISFVPPTPLPETVLLPMIRSPGWI-----LISPGNPTRARTPNDFNSA 882

Query: 119  FAGINETFSDSI-----NKGENALRSSVD------------TATSFIDSVVKNATTSADN 161
              G  E   D++     N   NAL SS              +A+SF+D +V    T   N
Sbjct: 881  M*GSKE*GPDAVSTIKSNDLANALISS*SDETTNRSAPSKLSASSFLDILVLKTVTFKPN 702

Query: 162  AF 163
            AF
Sbjct: 701  AF 696


>TC8273 UP|BAD11134 (BAD11134) Glutamate-rich protein, complete
          Length = 923

 Score = 28.1 bits (61), Expect = 3.4
 Identities = 25/102 (24%), Positives = 42/102 (40%)
 Frame = -1

Query: 69  VSEPLVAPTVHPEAILSSTDITSGKIESVPSLIKGGNESLAATKASATEVFAGINETFSD 128
           ++  +VA TV   A+LSS D +S                  +T A++    + ++ T   
Sbjct: 515 IATSVVASTVVSAALLSSDDFSS------------------STGAASVAAVSLVSSTIGS 390

Query: 129 SINKGENALRSSVDTATSFIDSVVKNATTSADNAFSKVFSAA 170
           S         SSV +A+  + SV    +TSA  + S    A+
Sbjct: 389 SFTSSGFTSGSSVFSASGLVSSVTSLVSTSAGASVSGAAGAS 264


>AV406960 
          Length = 425

 Score = 26.6 bits (57), Expect = 10.0
 Identities = 35/146 (23%), Positives = 59/146 (39%), Gaps = 2/146 (1%)
 Frame = +2

Query: 106 ESLAATKASATEVFAGINETFSDSINKGENALRSSVDTATSFIDSVVKNATTSADNAFSK 165
           ESL ATK  + EVF+G       ++ KGE             I++VV    T     F K
Sbjct: 56  ESLPATKHPSDEVFSG------STVKKGE-------------IEAVV--IATGVHTFFGK 172

Query: 166 VFSAADQTGDLAN--KKITSFSSEIDGVTSKAPGLVIDVLRRTVVAVESSLSSGASYVVY 223
                D T  + +  K +T+  +    + S A G+VI+++    +          + +V 
Sbjct: 173 AAHLVDSTNQVGHFQKVLTAIGNFC--ICSIAVGIVIELIVMYPIQHRKYRDGIDNLLVL 346

Query: 224 LYGSAKEFIPAEIRDTVNIYEDKAAQ 249
           L G     +P  +  T+ I   + +Q
Sbjct: 347 LIGGIPIAMPTVLSVTMAIGSHRLSQ 424


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.333    0.143    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,778,464
Number of Sequences: 28460
Number of extensions: 80233
Number of successful extensions: 573
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of query: 494
length of database: 4,897,600
effective HSP length: 94
effective length of query: 400
effective length of database: 2,222,360
effective search space: 888944000
effective search space used: 888944000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 57 (26.6 bits)