TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146681.9 + phase: 2 /pseudo
         (249 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18452 weakly similar to GB|AAO64875.1|29028992|BT005940 At5g27...    37  0.002
TC7947 similar to UP|Q9ST69 (Q9ST69) Ribosomal protein S5, parti...    30  0.39
AV767539                                                               29  0.67
AV422838                                                               27  2.5
TC10793                                                                27  4.3
TC14852 similar to UP|Q9LZI2 (Q9LZI2) DTDP-glucose 4-6-dehydrata...    27  4.3
BP064526                                                               25  9.6
TC14508 similar to AAP86659 (AAP86659) 26S proteasome subunit RP...    25  9.6

>TC18452 weakly similar to GB|AAO64875.1|29028992|BT005940 At5g27920
           {Arabidopsis thaliana;}, partial (11%)
          Length = 698

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 45/189 (23%), Positives = 82/189 (42%), Gaps = 8/189 (4%)
 Frame = +2

Query: 51  LEDLDISDNPIEDEGLRYLIPYFAGTSEMCSRLACLKLEAC----DLSCDVVNHLLDSLP 106
           LE+LDI+DN ++DEGL+ +          CSRL+ LK+  C    D     +      L 
Sbjct: 74  LEELDITDNEVDDEGLKSI--------SNCSRLSSLKVGICLNITDRGVAYIGMCCSKLK 229

Query: 107 VLNGTLKSLSIAENCLGSKVAGALGRFLSTPIEVLDASGIDLLPSGFL----ELQNMLTI 162
            L+   +S  I +  + +   G  G      +E+++ S    +  G L    + +N+ T+
Sbjct: 230 ELD-LYRSTGITDLGISAIACGCPG------LEIINTSYCTNITDGSLISLSKCRNLKTL 388

Query: 163 EEELSLVIINISKNRGGIQTARFLSKLLPQAPRLVDVNASSNCMPIESLSIISSALKFAK 222
           E    L++ +I            L+ +     +L+ V+    C  I+   +I  A  F+K
Sbjct: 389 EIRGCLLVTSIG-----------LASIAMNCKQLICVDI-KKCYNIDDSGMIPLAY-FSK 529

Query: 223 GIYGVPVSY 231
            +  + +SY
Sbjct: 530 SLRQINLSY 556


>TC7947 similar to UP|Q9ST69 (Q9ST69) Ribosomal protein S5, partial (81%)
          Length = 1294

 Score = 30.0 bits (66), Expect = 0.39
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 49 PNLEDLDISDNPIEDEGLRYLIPYFAGTSEMCSRLAC 85
          P+L+D     NP+   G  + +P F G    CS L C
Sbjct: 21 PSLQDRVTQPNPLRPSG*AFFLPSFNGYCIFCSTLRC 131


>AV767539 
          Length = 569

 Score = 29.3 bits (64), Expect = 0.67
 Identities = 12/28 (42%), Positives = 16/28 (56%)
 Frame = +1

Query: 73  FAGTSEMCSRLACLKLEACDLSCDVVNH 100
           FA  +E C+R +C +  AC LSC    H
Sbjct: 259 FARVTEGCTRQSCPRTRACPLSCFPAEH 342


>AV422838 
          Length = 448

 Score = 27.3 bits (59), Expect = 2.5
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 104 SLPVLNGTLKSLSIAENCLGSKVAGALGR--FLSTPIEVLDASGIDLL 149
           S P+   TLK   +A NCL +      GR   L   IE    SG+DLL
Sbjct: 17  STPI*TETLKLSPMAGNCLPAVKLTGSGRPVLLPNEIECFFLSGVDLL 160


>TC10793 
          Length = 556

 Score = 26.6 bits (57), Expect = 4.3
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 72  YFAGTSEMCSRLACLKLEACDLSCDVVNHLLDSLPVLNGTLK 113
           YF      C    C +L  C+  C V + +++++ VL G  K
Sbjct: 348 YFTLCYRGCFCFCCYRL*QCNFRCSVCDTIMEAVGVLQGIPK 473


>TC14852 similar to UP|Q9LZI2 (Q9LZI2) DTDP-glucose 4-6-dehydratase homolog
            D18 (At3g62830/F26K9_260), partial (70%)
          Length = 1470

 Score = 26.6 bits (57), Expect = 4.3
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
 Frame = -2

Query: 98   VNHLLDSLPVLNGTLKSLSIAENCLGSKVAG--ALGRFLSTPIEVLDASGIDLLPSGFLE 155
            + H+L++  +L  T+ S  +   CL  KV    A+    S  + V D+S  + L +G   
Sbjct: 1406 IRHILETSCLLPITINSQRLLRQCLSIKVTSDTAII*AHSGSVGVEDSSNSN-LNTGPSV 1230

Query: 156  LQNMLTIEEELSLVIINISKNRGGIQTARFLSKLL 190
            + +   +   LSLV+   + NR  +    FL ++L
Sbjct: 1229 VVHGQCLRRTLSLVVATSNTNRIDVAPVGFLLRML 1125


>BP064526 
          Length = 533

 Score = 25.4 bits (54), Expect = 9.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 96  DVVNHLLDSLPVLNGTLKSLSIAENCLGSK 125
           D+++HLL +L  L GT+   S+A    GS+
Sbjct: 406 DILSHLLRNLASLAGTINGRSLASILEGSQ 495


>TC14508 similar to AAP86659 (AAP86659) 26S proteasome subunit RPN5a, partial
            (96%)
          Length = 1957

 Score = 25.4 bits (54), Expect = 9.6
 Identities = 25/81 (30%), Positives = 36/81 (43%), Gaps = 7/81 (8%)
 Frame = -2

Query: 72   YFAGTSEMCSRLACLKLEACDLSCDVVNHLLDSLPVLNGTLKSL----SIAENCLGSKVA 127
            YF  T  +CS + C K  A   S D       S  +L  + + +    SI  +C  S + 
Sbjct: 1140 YFDTTRILCSIILCFKSSAAFSSKDFPETFSFSNSLLYVSQRVVHWMTSIVTSCFKSSLK 961

Query: 128  -GALGRFLSTPIEV--LDASG 145
             G   RFLS+ +E+  LD  G
Sbjct: 960  FGISDRFLSSKVELRRLDCIG 898


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.330    0.146    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,296,746
Number of Sequences: 28460
Number of extensions: 56006
Number of successful extensions: 355
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of query: 249
length of database: 4,897,600
effective HSP length: 88
effective length of query: 161
effective length of database: 2,393,120
effective search space: 385292320
effective search space used: 385292320
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.4 bits)