TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146681.8 + phase: 0 
         (173 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC12716 weakly similar to PIR|T49241|T49241 pectinesterase-like ...    27  1.5
TC15410                                                                27  1.5
TC17366 similar to UP|Q9FN41 (Q9FN41) Similarity to enolase-phos...    27  1.9
TC14929 similar to UP|CAE76633 (CAE76633) Pectin methylesterase ...    27  1.9
TC11268 similar to UP|Q7SBH0 (Q7SBH0) Predicted protein, partial...    27  2.5
TC18043                                                                27  2.5
TC10714 similar to UP|Q9LSF8 (Q9LSF8) Cytochrome p450, partial (...    26  4.3
TC9657 weakly similar to UP|CAE27414 (CAE27414) 3-hydroxyisobuty...    26  4.3
TC16704 similar to UP|Q8LDG4 (Q8LDG4) Receptor-like protein kina...    26  4.3
AV770418                                                               25  5.6
TC18108 similar to UP|Q08707 (Q08707) Box-P binding factor 1 (BP...    25  5.6
AV419255                                                               25  5.6
TC9753 similar to UP|Q9LNB2 (Q9LNB2) F5O11.6, partial (15%)            25  7.3
AV415704                                                               25  9.5
BP051082                                                               25  9.5
BP054625                                                               25  9.5
TC19479 similar to GB|AAO63286.1|28950725|BT005222 At4g14380 {Ar...    25  9.5
AV770828                                                               25  9.5
AV406571                                                               25  9.5

>TC12716 weakly similar to PIR|T49241|T49241 pectinesterase-like protein -
           Arabidopsis thaliana {Arabidopsis thaliana;} , partial
           (11%)
          Length = 709

 Score = 27.3 bits (59), Expect = 1.5
 Identities = 10/35 (28%), Positives = 20/35 (56%)
 Frame = +3

Query: 91  LNTAWQKLFELRWPDLINQIQPSDWQKAYWEAHLQ 125
           +N+ W+KL ++  P+    ++  DW  A+ + H Q
Sbjct: 402 MNSVWRKL*DMTNPEPSVMVEAEDWGGAWLKRHYQ 506


>TC15410 
          Length = 610

 Score = 27.3 bits (59), Expect = 1.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 50 RLTPHALYHFHLHMPFQDV 68
          ++T H+LYH HLH+ +  V
Sbjct: 69 QVTSHSLYHHHLHLNYHHV 13


>TC17366 similar to UP|Q9FN41 (Q9FN41) Similarity to enolase-phosphatase,
           partial (24%)
          Length = 622

 Score = 26.9 bits (58), Expect = 1.9
 Identities = 11/32 (34%), Positives = 17/32 (52%)
 Frame = -3

Query: 60  HLHMPFQDVNEEDFSRDDSTNNKRKRSRDWNL 91
           H+ MP+   +E     D  T N +K+  +WNL
Sbjct: 581 HVQMPYNSTHENAN*LDFFTQNLKKKKLNWNL 486


>TC14929 similar to UP|CAE76633 (CAE76633) Pectin methylesterase  (Fragment)
           , partial (24%)
          Length = 693

 Score = 26.9 bits (58), Expect = 1.9
 Identities = 32/129 (24%), Positives = 55/129 (41%), Gaps = 7/129 (5%)
 Frame = -1

Query: 48  ISRLTPHALYHFHLHMPFQDVNEEDFSRDDSTNNKRKRSRDWNLNTAWQKLFELRWPDLI 107
           I  L  H  Y+ H    F   +   + R    N+KR+ ++  +L    ++L +L+ P  I
Sbjct: 492 IKSLFSHLSYYSHTQPIF---SFSIYKRLGYANSKRRCAKSNSLQLKIKEL-KLQIPHTI 325

Query: 108 -------NQIQPSDWQKAYWEAHLQNCLDEAAEIALISPFKGRLADINISGTMLSCFLCN 160
                    ++P+    A     ++    EA  I L +PF+  L ++   G      L  
Sbjct: 324 YNPREKGKPVEPNQLDPAIKLPGVKAWASEALVITL-TPFQATLLEVPAPGPGY*YSL*T 148

Query: 161 EIFNAKLPL 169
           ++FNAK PL
Sbjct: 147 KVFNAKFPL 121


>TC11268 similar to UP|Q7SBH0 (Q7SBH0) Predicted protein, partial (5%)
          Length = 1097

 Score = 26.6 bits (57), Expect = 2.5
 Identities = 15/43 (34%), Positives = 20/43 (45%), Gaps = 3/43 (6%)
 Frame = -1

Query: 40  PSHLLDDLISRLTPHA---LYHFHLHMPFQDVNEEDFSRDDST 79
           PS+ L   I+ L PH    L+H H H P  +     F +  ST
Sbjct: 794 PSNTLHKNINLLHPHDLNHLHHLHPHHPLNNTKSPFFLKHQST 666


>TC18043 
          Length = 546

 Score = 26.6 bits (57), Expect = 2.5
 Identities = 15/48 (31%), Positives = 25/48 (51%), Gaps = 1/48 (2%)
 Frame = +2

Query: 14  CIDHLANQLLFGEDEVIAIIPVIYELPSHLLDDLISR-LTPHALYHFH 60
           C+D +A Q++ GE+       V+Y+L    L   + R LT  +L+  H
Sbjct: 257 CVDSMATQVIGGEEPCFPTFSVLYQLHI*QLQSPVMRSLTLISLFKSH 400


>TC10714 similar to UP|Q9LSF8 (Q9LSF8) Cytochrome p450, partial (16%)
          Length = 701

 Score = 25.8 bits (55), Expect = 4.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 123 HLQNCLDEAAEIALISPFKGRLADINISGTMLSCFL 158
           HL+ CL+  +  + +  FK    D+ I+G M  CF+
Sbjct: 372 HLKLCLNHVSH*SFMKAFKSSFYDVIINGDM--CFI 473


>TC9657 weakly similar to UP|CAE27414 (CAE27414) 3-hydroxyisobutyrate
           dehydrogenase  , partial (17%)
          Length = 765

 Score = 25.8 bits (55), Expect = 4.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 50  RLTPHALYHFHLHMPFQDVNEEDFSRDDSTNNKRKRSR 87
           +L+ HALYH   +     V EED  R+   +  R ++R
Sbjct: 478 KLSKHALYHT*NNKDHHHVAEEDCVRETLLSRSRTKTR 365


>TC16704 similar to UP|Q8LDG4 (Q8LDG4) Receptor-like protein kinase-like
           protein, partial (11%)
          Length = 706

 Score = 25.8 bits (55), Expect = 4.3
 Identities = 11/38 (28%), Positives = 18/38 (46%)
 Frame = +3

Query: 83  RKRSRDWNLNTAWQKLFELRWPDLINQIQPSDWQKAYW 120
           R+R  +   +  W KL  L W  ++  I+   WQ+  W
Sbjct: 261 RRRGVEQKGHLGWNKLLILHWGKIMT*IKWRFWQRWLW 374


>AV770418 
          Length = 283

 Score = 25.4 bits (54), Expect = 5.6
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 34  PVIYELPSHLLDDLISRLTPHALYHFHLHMP 64
           P  +   +H++DD++ R+ P A   ++ H+P
Sbjct: 153 PSFFY*QNHMIDDIVERVVPLASRWWNPHVP 245


>TC18108 similar to UP|Q08707 (Q08707) Box-P binding factor 1 (BPF-1),
           partial (15%)
          Length = 700

 Score = 25.4 bits (54), Expect = 5.6
 Identities = 8/22 (36%), Positives = 13/22 (58%)
 Frame = +3

Query: 106 LINQIQPSDWQKAYWEAHLQNC 127
           L++   P+ WQ   W  HL++C
Sbjct: 279 LVSAPSPATWQAPSWTWHLEDC 344


>AV419255 
          Length = 421

 Score = 25.4 bits (54), Expect = 5.6
 Identities = 21/82 (25%), Positives = 33/82 (39%), Gaps = 1/82 (1%)
 Frame = -3

Query: 48  ISRLTPHALYHFHLHMPFQDVNEEDFSRDDSTNNKRKRSRDWNLNTAWQKL-FELRWPDL 106
           +SR+T H  YH   +    DV            N   +  D+    +WQ    +L+ PD 
Sbjct: 287 VSRMTSHTRYHLSSYKSTVDV------------NCLVQKPDYTWQRSWQNYSHDLQLPD* 144

Query: 107 INQIQPSDWQKAYWEAHLQNCL 128
           I + Q    Q A  + H ++ L
Sbjct: 143 IQENQDQGEQAAQEKFHKRSHL 78


>TC9753 similar to UP|Q9LNB2 (Q9LNB2) F5O11.6, partial (15%)
          Length = 529

 Score = 25.0 bits (53), Expect = 7.3
 Identities = 12/28 (42%), Positives = 15/28 (52%)
 Frame = -2

Query: 30  IAIIPVIYELPSHLLDDLISRLTPHALY 57
           I I P  Y  P H+ D   S +TPH L+
Sbjct: 216 IHIKPWCYHDPHHVRDQF*SPVTPHVLH 133


>AV415704 
          Length = 355

 Score = 24.6 bits (52), Expect = 9.5
 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 15/46 (32%)
 Frame = +1

Query: 95  WQKLFELRWPDLI---------------NQIQPSDWQKAYWEAHLQ 125
           W+ L   RWP L                    P  W+K Y+E H++
Sbjct: 121 WESLVRTRWPLLALAPSSSSSSSSSTSATSPNPKKWRKFYFERHVE 258


>BP051082 
          Length = 562

 Score = 24.6 bits (52), Expect = 9.5
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -2

Query: 77  DSTNNKRKRSRDWNLNTAWQKLFELRWPDLINQIQPSDWQ 116
           D   ++R+  + W +  +WQ L     P   N ++ + WQ
Sbjct: 468 DCVEHQRRLRKRWEMRDSWQSLLSF*LP---NHLKFAKWQ 358


>BP054625 
          Length = 537

 Score = 24.6 bits (52), Expect = 9.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 43  LLDDLISRLTPHALYHFHLHMPFQDV 68
           LLDD+I  L     Y  H+H+P   +
Sbjct: 251 LLDDVILTLISMVHYPIHVHIPMHSI 328


>TC19479 similar to GB|AAO63286.1|28950725|BT005222 At4g14380 {Arabidopsis
           thaliana;}, partial (10%)
          Length = 419

 Score = 24.6 bits (52), Expect = 9.5
 Identities = 10/19 (52%), Positives = 12/19 (62%)
 Frame = +2

Query: 44  LDDLISRLTPHALYHFHLH 62
           L  L SR TPHA  + H+H
Sbjct: 284 LHSLTSRTTPHAASNHHVH 340


>AV770828 
          Length = 527

 Score = 24.6 bits (52), Expect = 9.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 40  PSHLLDDLISRLTPHALYHFHLH 62
           PSHLLD+L S LT  A +    H
Sbjct: 349 PSHLLDELHSELTRIACHQCQPH 281


>AV406571 
          Length = 178

 Score = 24.6 bits (52), Expect = 9.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 41  SHLLDDLISRLTPHALYHFHLHMPFQD 67
           SH + ++  ++  H LY++HL + F D
Sbjct: 135 SHEVSNIQPQIFSHRLYYYHLVVVFDD 55


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.139    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,970,282
Number of Sequences: 28460
Number of extensions: 60170
Number of successful extensions: 365
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of query: 173
length of database: 4,897,600
effective HSP length: 84
effective length of query: 89
effective length of database: 2,506,960
effective search space: 223119440
effective search space used: 223119440
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)