TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146664.9 - phase: 0 
         (59 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV766371                                                               67  5e-13
CN824943                                                               31  0.056
TC8749                                                                 26  1.8
TC10672 weakly similar to PIR|T00710|T00710 thioredoxin homolog ...    25  3.0
AV427444                                                               24  5.2
TC9132 similar to UP|Q8GSM7 (Q8GSM7) Hydroxycinnamoyl transferas...    24  6.8
AV428222                                                               23  8.9
TC16016                                                                23  8.9
TC12777 similar to UP|Q9SYP6 (Q9SYP6) F9H16.10 protein, partial ...    23  8.9
TC7944 homologue to UP|Q9ASR1 (Q9ASR1) At1g56070/T6H22_13 (Elong...    23  8.9
TC7830 UP|Q8H946 (Q8H946) Phosphoenolpyruvate carboxylase  , com...    23  8.9

>AV766371 
          Length = 483

 Score = 67.4 bits (163), Expect = 5e-13
 Identities = 30/50 (60%), Positives = 36/50 (72%)
 Frame = -2

Query: 3   HLSTLACPKVHEEARYLPNMISANFLQKSTVWPESFKNSGTNNFSIGIYF 52
           HLSTLACPKV EE R  P ++SAN L +S VWP+ F  SG N+ SI +YF
Sbjct: 389 HLSTLACPKVLEETRLFPEVLSANLLPRSAVWPKGFSESGPNDESIALYF 240


>CN824943 
          Length = 719

 Score = 30.8 bits (68), Expect = 0.056
 Identities = 17/54 (31%), Positives = 31/54 (56%), Gaps = 2/54 (3%)
 Frame = +3

Query: 3   HLSTLACPKVHEEA-RYLPNMISANFLQKSTVWPESF-KNSGTNNFSIGIYFLS 54
           HLS+ A PKV +   ++LP  +S + + + + WP  F +  G+   +I +YF +
Sbjct: 159 HLSSCASPKVLDVVNKFLPE-VSLHEVSRLSTWPSQFHQGGGSKEDNIALYFFA 317


>TC8749 
          Length = 643

 Score = 25.8 bits (55), Expect = 1.8
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 3   HLSTLACPKVHEE-ARYLPNMISAN 26
           HLS+L C  +HE+ A Y+  M+ +N
Sbjct: 228 HLSSLCCNPIHEQVASYISEMMVSN 154


>TC10672 weakly similar to PIR|T00710|T00710 thioredoxin homolog F22O13.5 -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (12%)
          Length = 511

 Score = 25.0 bits (53), Expect = 3.0
 Identities = 14/38 (36%), Positives = 19/38 (49%), Gaps = 4/38 (10%)
 Frame = +2

Query: 23  ISANFLQK----STVWPESFKNSGTNNFSIGIYFLSPH 56
           +S NFL+K    S V+ ESF   G   +  G +   PH
Sbjct: 98  LSFNFLEKF*RKSCVFLESFNG*GFYQYQFGFFLAWPH 211


>AV427444 
          Length = 428

 Score = 24.3 bits (51), Expect = 5.2
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -3

Query: 20  PNMISANFLQKSTVWPESFKNSGT--NNFSIGI 50
           P++   +F + S ++  SFKN+GT   NF+ G+
Sbjct: 345 PSLFINDFSRLSFIFVISFKNNGTPDTNFTTGL 247


>TC9132 similar to UP|Q8GSM7 (Q8GSM7) Hydroxycinnamoyl transferase,
          partial (53%)
          Length = 878

 Score = 23.9 bits (50), Expect = 6.8
 Identities = 8/15 (53%), Positives = 12/15 (79%)
 Frame = +3

Query: 18 YLPNMISANFLQKST 32
          ++PN +S+NFL  ST
Sbjct: 75 FIPNFLSSNFLSSST 119


>AV428222 
          Length = 416

 Score = 23.5 bits (49), Expect = 8.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 24  SANFLQKSTVWPESFKNSGTNNFSIGIYF 52
           + N + ++ +WP   + +  NNF  GI F
Sbjct: 212 TTNNIIEALIWPNKIR*TEINNFHHGIRF 126


>TC16016 
          Length = 602

 Score = 23.5 bits (49), Expect = 8.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 2   GHLSTLACPKVHEEARYLPNMISANFLQ 29
           G L T +C KV++E ++    ISA  ++
Sbjct: 299 GSLHTESCQKVNKEVKFESKQISAEKME 216


>TC12777 similar to UP|Q9SYP6 (Q9SYP6) F9H16.10 protein, partial (10%)
          Length = 500

 Score = 23.5 bits (49), Expect = 8.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 14 EEARYLPNMISANFLQKSTVWPESFK 39
          EEA+Y P+++ A  L + TV P+  K
Sbjct: 69 EEAKYAPDLVKALELSEQTV-PDDLK 143


>TC7944 homologue to UP|Q9ASR1 (Q9ASR1) At1g56070/T6H22_13 (Elongation factor
            EF-2), complete
          Length = 2971

 Score = 23.5 bits (49), Expect = 8.9
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
 Frame = -2

Query: 21   NMISANFLQKSTVWPESFKNSGTNNFSIGIYFLS-----PHNP 58
            N ++   +  S ++     +S  N FSI ++FLS      HNP
Sbjct: 1563 NCVTTRNILNSLLFLSHPNDSSLNTFSIQVFFLSRNIIWSHNP 1435


>TC7830 UP|Q8H946 (Q8H946) Phosphoenolpyruvate carboxylase  , complete
          Length = 3376

 Score = 23.5 bits (49), Expect = 8.9
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 2    GHLSTLACPKVHEEARYLPNMISANFLQKSTVWPESFK 39
            GH S L  PK+ +   +  + +S     ++T+ P S++
Sbjct: 1578 GHCSDLTSPKLRKSEMFWTHFMSLPNFHRTTLEPISYQ 1691


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.133    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,186,559
Number of Sequences: 28460
Number of extensions: 10893
Number of successful extensions: 75
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of query: 59
length of database: 4,897,600
effective HSP length: 35
effective length of query: 24
effective length of database: 3,901,500
effective search space: 93636000
effective search space used: 93636000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)