TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146664.12 + phase: 0 /pseudo
         (410 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC16266 similar to UP|Q8VZI2 (Q8VZI2) AT4g33700/T16L1_190, parti...   178  2e-45
CB829509                                                               99  1e-21
TC20236                                                                84  3e-17
TC12631                                                                62  2e-10
AU089584                                                               52  2e-07
AV429035                                                               38  0.004
TC17114 similar to GB|AAO64890.1|29029022|BT005955 At4g34440 {Ar...    29  1.3
TC9244 weakly similar to UP|Q39364 (Q39364) Non-green plastid in...    29  1.6
BP071590                                                               27  4.8
BP030023                                                               27  6.2
TC8367 similar to GB|AAM65667.1|21593700|AY088122 J8-like protei...    27  8.1
TC17976 similar to UP|Q9XHP4 (Q9XHP4) Peroxisomal copper-contain...    27  8.1
TC19638 similar to UP|O23233 (O23233) Serine C-palmitoyltransfer...    27  8.1
TC15298 homologue to UP|QUA1_ARATH (Q9LSG3) Glycosyltransferase ...    27  8.1

>TC16266 similar to UP|Q8VZI2 (Q8VZI2) AT4g33700/T16L1_190, partial (63%)
          Length = 1193

 Score =  178 bits (451), Expect = 2e-45
 Identities = 131/317 (41%), Positives = 174/317 (54%), Gaps = 57/317 (17%)
 Frame = +2

Query: 128 RYGLRFGATMSPFVRVLLLLFFPFAYPVSKLLDCLLGKGHTALLGREELKTLVNLHANEA 187
           RYGL  GA ++PFVRVL+ + +P A+P+SKLLD LLG  H AL  R ELKTLVN+H NEA
Sbjct: 2   RYGLAIGALVAPFVRVLVWICYPIAFPISKLLDFLLGHRHEALFRRAELKTLVNMHGNEA 181

Query: 188 GKGGELTLHETTIIAGALDLTMKTAKDAMTPLSETFSLDINSKLD---MSRI*CSAVRK- 243
           GKGGELT  ETTIIAGAL+L+ KTA DAM+P+ ETF++DINSKLD   M+ I  +   + 
Sbjct: 182 GKGGELTHDETTIIAGALELSDKTASDAMSPICETFAIDINSKLDRELMNEILENGHSRV 361

Query: 244 ---------------MKHQLSL*L*GEFP------------GENWPLYDILNQFKKGQSH 276
                          +K+ L++    E P             E+ PLYDILN+F+KG SH
Sbjct: 362 PVFYEQPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPESMPLYDILNEFQKGHSH 541

Query: 277 MAVVLK--------SKENI-----RTAATNTEG--------FGPFLP-HDYISI-STEAS 313
           MAVV++        S EN      R    + +G          P +P H + S  +T  S
Sbjct: 542 MAVVVRRCDKNQQQSSENYANGSERYVTVDIDGEKPSQEKVLKPTMPLHKWKSFPNTNKS 721

Query: 314 NWQSEGSEYYSATLKNAMLQESKDSDPLHRSKQHDTSISLENMESLLGEEEVVGIITLED 373
           N     S+ +S  + + +L+   D +PL    +               EEE VGIIT+ED
Sbjct: 722 NRGGSRSKKWSKNMYSDILE--IDGNPLPHMPE---------------EEEAVGIITMED 850

Query: 374 VMEELLQVSL---TSYH 387
           V+EELLQ  +   T +H
Sbjct: 851 VIEELLQEEIFDETDHH 901


>CB829509 
          Length = 531

 Score = 99.0 bits (245), Expect = 1e-21
 Identities = 63/138 (45%), Positives = 78/138 (55%), Gaps = 31/138 (22%)
 Frame = +3

Query: 176 LKTLVNLHANEAGKGGELTLHETTIIAGALDLTMKTAKDAMTPLSETFSLDINSKLDMSR 235
           LK LV++H  EAGKGGELT  ETTII+GALDLT KTA +AMTP+  TFSLD++SKLD   
Sbjct: 3   LKALVSIHGQEAGKGGELTHDETTIISGALDLTEKTAGEAMTPIESTFSLDVDSKLDWEA 182

Query: 236 I*CSAVR-------------------KMKHQLSL*L*GEFP------------GENWPLY 264
           I     R                    +K+ L++    E P              + PLY
Sbjct: 183 IGKILARGHSRVPVYNGNPKNIIGLLLVKNLLTIRAETETPVSAVSIRRIPRVPADMPLY 362

Query: 265 DILNQFKKGQSHMAVVLK 282
           DILN+F+KG SHMA V+K
Sbjct: 363 DILNEFQKGSSHMAAVVK 416


>TC20236 
          Length = 463

 Score = 84.3 bits (207), Expect = 3e-17
 Identities = 47/118 (39%), Positives = 71/118 (59%), Gaps = 1/118 (0%)
 Frame = +2

Query: 15  GNHFW-VLALLCWVFMFFAAISSALALGLLSFSQVDLEVLVKAGQPHIQKNAAKIMSIVK 73
           G  +W V A +    + FA I S L LGL+S S VDLE+L ++G    +K AA I+  V 
Sbjct: 107 GTLWWFVYAGISCFLVLFAGIMSGLTLGLMSLSLVDLEILQRSGSSTEKKQAAAILPFVI 286

Query: 74  NEHLVLCTLLMAKSLALEGVSVLMEKMFPEWVAVLLATALISIIAEVIPQALNSRYGL 131
            +H +L T L+  + A+E + + ++K+F   VAVLL+   +    E+IPQA+ +RYGL
Sbjct: 287 KQHQLLVTSLLCNACAMEALPLYLDKIFHPVVAVLLSVTFVLCFGEIIPQAICTRYGL 460


>TC12631 
          Length = 870

 Score = 61.6 bits (148), Expect = 2e-10
 Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 10/143 (6%)
 Frame = +1

Query: 262 PLYDILNQFKKGQSHMAVVLKSKENIRTAATNTEGFGPFLPHDYISISTEASNWQSEGSE 321
           PLYDILN+F+KG SHMA V+K++           G G  +P   I    +    +S G++
Sbjct: 148 PLYDILNEFQKGSSHMAAVVKAR-----------GKGITIPQ--IIDEEKYDEKESVGAD 288

Query: 322 YYSAT---------LKNAMLQESKDS-DPLHRSKQHDTSISLENMESLLGEEEVVGIITL 371
               T         L++ ++   K S  P     QH  + +  + +  + + EV+GIITL
Sbjct: 289 SQLTTPLLQKQHEKLESVVVDIEKPSRHPSSNKLQHSDATTTGSFKESIEDGEVIGIITL 468

Query: 372 EDVMEELLQVSLTSYHSTIIFVH 394
           EDV EELLQ  +       + VH
Sbjct: 469 EDVFEELLQEEIVDETDEYVDVH 537


>AU089584 
          Length = 448

 Score = 52.0 bits (123), Expect = 2e-07
 Identities = 27/65 (41%), Positives = 37/65 (56%)
 Frame = +2

Query: 13  CCGNHFWVLALLCWVFMFFAAISSALALGLLSFSQVDLEVLVKAGQPHIQKNAAKIMSIV 72
           CC + F+V  L+    + FA++ S L LGL+S S VDLEVL K+G P   K   +   + 
Sbjct: 254 CCESQFFVHILVIVFLVLFASLMSGLTLGLMSLSLVDLEVLAKSGTPRDXKPLXRYCLL* 433

Query: 73  KNEHL 77
           K  HL
Sbjct: 434 KTSHL 448


>AV429035 
          Length = 326

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = +1

Query: 13  CCGNHFWVLALLCWVFMFFAAISSALALGLLSFSQVDLEVLVKAGQPHIQKNAAK 67
           CC    W+  +     + ++++ + L LGL+     DLE L+K+G+P  + +A+K
Sbjct: 160 CCDTQLWLYLVEIVGSICYSSLMAGLTLGLMPLGLGDLEALIKSGRPQDRMHASK 324


>TC17114 similar to GB|AAO64890.1|29029022|BT005955 At4g34440 {Arabidopsis
           thaliana;}, partial (3%)
          Length = 792

 Score = 29.3 bits (64), Expect = 1.3
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 54  VKAGQPHIQKNAAKIMSIVKNEHLVLCTLLMAKSLALEGV 93
           +K   PH  K  + I S++K +HLV C L +A  +A E +
Sbjct: 662 IKLKVPHNLKPHSFIKSMIKAQHLVRCVLAVAALVANENL 543


>TC9244 weakly similar to UP|Q39364 (Q39364) Non-green plastid inner
          envelope membrane protein precursor, partial (18%)
          Length = 746

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 10/19 (52%), Positives = 12/19 (62%)
 Frame = +3

Query: 17 HFWVLALLCWVFMFFAAIS 35
          HFW   LLCW  ++F  IS
Sbjct: 27 HFWSSGLLCWCTLWFGTIS 83


>BP071590 
          Length = 410

 Score = 27.3 bits (59), Expect = 4.8
 Identities = 14/37 (37%), Positives = 20/37 (53%), Gaps = 5/37 (13%)
 Frame = -2

Query: 13  CCG-----NHFWVLALLCWVFMFFAAISSALALGLLS 44
           CCG     +H WV ALL WV +  + +   ++ G LS
Sbjct: 337 CCGCVHWSSHGWV-ALLTWVVILLSTLDGVVSSGYLS 230


>BP030023 
          Length = 538

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 16/48 (33%), Positives = 27/48 (55%)
 Frame = -1

Query: 17  HFWVLALLCWVFMFFAAISSALALGLLSFSQVDLEVLVKAGQPHIQKN 64
           +F   AL  ++F+F +  S ALA+  L +S + L VL+ +   H+  N
Sbjct: 148 YFLFCALCFFIFLFCSFSSLALAVFTLCWSPLALPVLLLSFSAHVLCN 5


>TC8367 similar to GB|AAM65667.1|21593700|AY088122 J8-like protein
           {Arabidopsis thaliana;}, partial (64%)
          Length = 962

 Score = 26.6 bits (57), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 18  FWVLALLCWVFMFFAAISSALALGLL 43
           FWV+   CWVF+ +  +   L   LL
Sbjct: 222 FWVVVNFCWVFLIWEILKLCLLQWLL 299


>TC17976 similar to UP|Q9XHP4 (Q9XHP4) Peroxisomal copper-containing amine
           oxidase, partial (16%)
          Length = 510

 Score = 26.6 bits (57), Expect = 8.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 12  HCCGNHFWVLALLCWVFMFFA 32
           + CG+H W  A   WVF FF+
Sbjct: 181 YACGSH-WFYAYATWVFRFFS 240


>TC19638 similar to UP|O23233 (O23233) Serine C-palmitoyltransferase like
           protein, partial (17%)
          Length = 469

 Score = 26.6 bits (57), Expect = 8.1
 Identities = 11/32 (34%), Positives = 17/32 (52%)
 Frame = +3

Query: 3   LHEVEIDDEHCCGNHFWVLALLCWVFMFFAAI 34
           + E++ D + CC   F    LL WV +FF  +
Sbjct: 363 IFEIQADKKKCCSW*FM*FFLLYWVTVFFCEL 458


>TC15298 homologue to UP|QUA1_ARATH (Q9LSG3) Glycosyltransferase QUASIMODO1 
           , partial (33%)
          Length = 818

 Score = 26.6 bits (57), Expect = 8.1
 Identities = 13/38 (34%), Positives = 19/38 (49%), Gaps = 6/38 (15%)
 Frame = +1

Query: 11  EHCCGNHFWVLALLCWVFMFFAAI------SSALALGL 42
           E  C N FWV+  +C V+ F  ++      S  L +GL
Sbjct: 94  EWSCRNMFWVIP*ICTVYEFLTSLD*SKI*SEGLCMGL 207


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,767,862
Number of Sequences: 28460
Number of extensions: 84733
Number of successful extensions: 739
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of query: 410
length of database: 4,897,600
effective HSP length: 92
effective length of query: 318
effective length of database: 2,279,280
effective search space: 724811040
effective search space used: 724811040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)