BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146664.11 + phase: 0
(248 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC13475 35 0.012
TC18519 homologue to UP|Q9FK40 (Q9FK40) Histone acetyltransferas... 29 0.86
TC14551 similar to GB|AAL05900.1|15777879|AY055100 AT3g15640/MSJ... 28 1.9
BP031533 27 2.5
TC11018 homologue to UP|Q8VWW1 (Q8VWW1) LIM domain protein, part... 27 3.3
TC18413 similar to UP|P93378 (P93378) Tumor-related protein, par... 27 3.3
TC19394 similar to UP|NSR1_YEAST (P27476) Nuclear localization s... 26 7.3
TC18988 similar to UP|FUS_MOUSE (P56959) RNA-binding protein FUS... 26 7.3
AV424969 25 9.5
TC16371 weakly similar to UP|P92169 (P92169) Serine repeat antig... 25 9.5
TC13616 homologue to UP|Q93YZ7 (Q93YZ7) At2g31810/F20M17.15, par... 25 9.5
BP062869 25 9.5
BP072037 25 9.5
>TC13475
Length = 505
Score = 35.0 bits (79), Expect = 0.012
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +1
Query: 172 KVKLCITPEKLLEILSQEVSTKELIESVRIVAKCGVTAASSGGCGISSTTSIVSDQW 228
+VKL I +L EILS++V+T+ LIE +R+ A T +++ S T SI W
Sbjct: 1 RVKLVIDTRQLEEILSEQVNTEALIEKMRMAA---TTCSATSPARSSRTMSIWKVGW 162
>TC18519 homologue to UP|Q9FK40 (Q9FK40) Histone acetyltransferase
(AT5g50320/MXI22_3), partial (25%)
Length = 498
Score = 28.9 bits (63), Expect = 0.86
Identities = 20/65 (30%), Positives = 29/65 (43%)
Frame = +3
Query: 87 STCATAETGGGGQIIRQGHVRSQSVPTTPLPAPYRMSLDYQYYQGVGLLKRTSTESFSCR 146
+TC E G I+R+ HV +VP + D +QG G L E +CR
Sbjct: 162 TTCP--ELTGRCSIVRELHVYGTAVPV------HGRDADKLQHQGYGTLLMEEAERIACR 317
Query: 147 TNRSS 151
+RS+
Sbjct: 318 EHRST 332
>TC14551 similar to GB|AAL05900.1|15777879|AY055100 AT3g15640/MSJ11_4
{Arabidopsis thaliana;}, partial (59%)
Length = 813
Score = 27.7 bits (60), Expect = 1.9
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 142 SFSCRTNRSSVNKSTISSSRRSSRKSTGIWKVKLCITPEKLLEILSQEVST 192
SF+ N + T+ S KS G+ V +C+ P LL+ L+ +VST
Sbjct: 538 SFNSPWNEFGKDGETMCSIH*GLSKSWGLCLVSICVYPLLLLQYLT*KVST 690
>BP031533
Length = 529
Score = 27.3 bits (59), Expect = 2.5
Identities = 8/18 (44%), Positives = 15/18 (82%)
Frame = -1
Query: 106 VRSQSVPTTPLPAPYRMS 123
++S+++PTTP P PY ++
Sbjct: 481 IKSETLPTTPRPVPYELA 428
>TC11018 homologue to UP|Q8VWW1 (Q8VWW1) LIM domain protein, partial (31%)
Length = 479
Score = 26.9 bits (58), Expect = 3.3
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -2
Query: 150 SSVNKSTISSSRRSSRKSTGIWKVKLC 176
S ++K+T +SSR +++ + WKV+ C
Sbjct: 466 SLLSKNTTASSREYNKRLSSTWKVRSC 386
>TC18413 similar to UP|P93378 (P93378) Tumor-related protein, partial (41%)
Length = 740
Score = 26.9 bits (58), Expect = 3.3
Identities = 22/90 (24%), Positives = 36/90 (39%)
Frame = +2
Query: 30 PPITVNFITNEFQGHAIFPTNDQSSKPLCQFDELVAGQSYYLLPMTVLSPNNKIDYPSTC 89
PP+ N E + F T D SS + + + + P L+ N +P
Sbjct: 284 PPVVTNQCPAEASKSSSFHTVD-SSHAVSRVTLMFTSVETLITPFLGLTGVNVTAWPRKP 460
Query: 90 ATAETGGGGQIIRQGHVRSQSVPTTPLPAP 119
+T T G + +R++ +PTT P P
Sbjct: 461 STTTTFRGHVLFGDLAIRTKPLPTTQGPRP 550
>TC19394 similar to UP|NSR1_YEAST (P27476) Nuclear localization sequence
binding protein (P67), partial (6%)
Length = 590
Score = 25.8 bits (55), Expect = 7.3
Identities = 14/36 (38%), Positives = 20/36 (54%)
Frame = +2
Query: 150 SSVNKSTISSSRRSSRKSTGIWKVKLCITPEKLLEI 185
+ +NKST +RRSS++ W+V L KL I
Sbjct: 128 NKLNKSTTKKTRRSSKR----WRVPLAPATTKLRRI 223
>TC18988 similar to UP|FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen
protein), partial (3%)
Length = 425
Score = 25.8 bits (55), Expect = 7.3
Identities = 14/31 (45%), Positives = 18/31 (57%)
Frame = +3
Query: 138 TSTESFSCRTNRSSVNKSTISSSRRSSRKST 168
+S+ SFS SSV+ I SS +SS ST
Sbjct: 159 SSSSSFSAAATASSVSSPAIGSSYQSSPPST 251
>AV424969
Length = 359
Score = 25.4 bits (54), Expect = 9.5
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +1
Query: 137 RTSTESFSCRTNRSSVNKSTISSSRR--SSRKS 167
+ T S ++NRSS+++S SSSRR SSR +
Sbjct: 58 KPKTLQISPKSNRSSLSRSPSSSSRRWISSRSN 156
>TC16371 weakly similar to UP|P92169 (P92169) Serine repeat antigen
(Fragment), partial (13%)
Length = 500
Score = 25.4 bits (54), Expect = 9.5
Identities = 12/32 (37%), Positives = 18/32 (55%)
Frame = -2
Query: 210 ASSGGCGISSTTSIVSDQWSLSSSGRSAPSKV 241
+ S +S++S S +WSLSSS S S +
Sbjct: 157 SESSSASSNSSSSFSSTRWSLSSSEASTSSSI 62
>TC13616 homologue to UP|Q93YZ7 (Q93YZ7) At2g31810/F20M17.15, partial (9%)
Length = 440
Score = 25.4 bits (54), Expect = 9.5
Identities = 15/45 (33%), Positives = 23/45 (50%), Gaps = 1/45 (2%)
Frame = -2
Query: 134 LLKRTSTESF-SCRTNRSSVNKSTISSSRRSSRKSTGIWKVKLCI 177
L RT +S S R++R KS ++ RK G W+ +LC+
Sbjct: 397 LFSRTLRQSG*SFRSHRRRTPKSCVAEPWIERRKGEGRWERRLCL 263
>BP062869
Length = 532
Score = 25.4 bits (54), Expect = 9.5
Identities = 12/42 (28%), Positives = 22/42 (51%)
Frame = +3
Query: 143 FSCRTNRSSVNKSTISSSRRSSRKSTGIWKVKLCITPEKLLE 184
+S NRS ++ + S + + T ++ +TP+KLLE
Sbjct: 111 WSYTKNRSRMDHGAVKKSTVTINQGTSHTHLRFLLTPQKLLE 236
>BP072037
Length = 472
Score = 25.4 bits (54), Expect = 9.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 87 STCATAETGGGGQIIRQGH 105
STC+T+ETG ++ GH
Sbjct: 251 STCSTSETGSRNPLLHLGH 307
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.314 0.130 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,489,600
Number of Sequences: 28460
Number of extensions: 61740
Number of successful extensions: 289
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of query: 248
length of database: 4,897,600
effective HSP length: 88
effective length of query: 160
effective length of database: 2,393,120
effective search space: 382899200
effective search space used: 382899200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)
Medicago: description of AC146664.11