BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146651.7 - phase: 0 /pseudo
(394 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC13255 homologue to UP|Q7XXR9 (Q7XXR9) Katanin, partial (41%) 270 2e-79
TC9659 homologue to UP|Q9SEA8 (Q9SEA8) Salt-induced AAA-Type ATP... 221 2e-58
TC18707 homologue to PIR|T02901|T02901 MSP1 protein homolog T13J... 155 8e-39
TC12787 weakly similar to UP|MSP1_YEAST (P28737) MSP1 protein (T... 132 1e-31
BF177891 130 3e-31
TC15365 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {... 128 1e-30
AV408284 126 7e-30
TC9489 homologue to UP|Q9SEI5 (Q9SEI5) 26S proteasome AAA-ATPase... 115 2e-26
TC16349 homologue to UP|PRS6_SOLTU (P54778) 26S protease regulat... 111 2e-25
TC14911 homologue to UP|Q93X55 (Q93X55) Peroxin 6 (Fragment), pa... 110 4e-25
CB826675 105 2e-23
TC10267 similar to UP|Q7XXR9 (Q7XXR9) Katanin, partial (20%) 79 2e-22
AV421390 81 3e-16
TC9326 homologue to UP|Q93WX4 (Q93WX4) Suppressor of K+ transpor... 80 6e-16
TC16655 homologue to UP|O99018 (O99018) Chloroplast protease pre... 71 3e-13
TC10924 homologue to UP|Q8H9D4 (Q8H9D4) 26S proteasome AAA-ATPas... 62 1e-10
AV422700 60 8e-10
TC9051 UP|PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 ... 54 3e-08
CN825067 54 6e-08
CN825587 51 4e-07
>TC13255 homologue to UP|Q7XXR9 (Q7XXR9) Katanin, partial (41%)
Length = 532
Score = 270 bits (691), Expect(2) = 2e-79
Identities = 134/140 (95%), Positives = 137/140 (97%)
Frame = +1
Query: 145 PKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVK 204
PKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC TTFFNISASS+VSKWRGDSEKLVK
Sbjct: 4 PKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVK 183
Query: 205 VLFELARHHAPATIFLDEIDAIISQRGEGRSEHEASRRLKTELLIQMDGLARTDELVFVL 264
VLF+LARHHAP+TIFLDEIDAIISQRGE RSEHEASRRLKTELLIQMDGL RTDELVFVL
Sbjct: 184 VLFQLARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTRTDELVFVL 363
Query: 265 AATNLPWELDAAMLRRLEKR 284
AATNLPWELDAAMLRRLEKR
Sbjct: 364 AATNLPWELDAAMLRRLEKR 423
Score = 42.7 bits (99), Expect(2) = 2e-79
Identities = 20/29 (68%), Positives = 23/29 (78%)
Frame = +2
Query: 285 NQKQEEQCLRNSFLCSLMRNRCPMIYWWT 313
NQ++E QCLRNSF SLMRN+ PMI W T
Sbjct: 443 NQRRE*QCLRNSFPRSLMRNQSPMICWST 529
>TC9659 homologue to UP|Q9SEA8 (Q9SEA8) Salt-induced AAA-Type ATPase,
partial (74%)
Length = 1060
Score = 221 bits (562), Expect = 2e-58
Identities = 106/188 (56%), Positives = 142/188 (75%)
Frame = +1
Query: 97 ESAEMRTLAESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWK 156
E E L L+ IIR PN+KW + GLE+AK+ L+EAV++P+K+P++FTG PW+
Sbjct: 388 EDPEQAKLRAGLNSAIIREKPNIKWNDVAGLESAKQSLQEAVILPVKFPQFFTGKRRPWR 567
Query: 157 GILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPA 216
LL+GPPGTGK+ LAKAVATE ++TFF++S+S + SKW G+SEKLV LF++AR AP+
Sbjct: 568 AFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLGSKWMGESEKLVSNLFQMARESAPS 747
Query: 217 TIFLDEIDAIISQRGEGRSEHEASRRLKTELLIQMDGLARTDELVFVLAATNLPWELDAA 276
IF+DEID++ QRGEG +E EASRR+KTELL+QM G+ D+ V VLAATN P+ LD A
Sbjct: 748 IIFVDEIDSLCGQRGEG-NESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQA 924
Query: 277 MLRRLEKR 284
+ RR +KR
Sbjct: 925 IRRRFDKR 948
>TC18707 homologue to PIR|T02901|T02901 MSP1 protein homolog T13J8.110 -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(29%)
Length = 771
Score = 155 bits (393), Expect = 8e-39
Identities = 91/205 (44%), Positives = 126/205 (61%), Gaps = 2/205 (0%)
Frame = +3
Query: 82 NGVDEKPKKSLLPPFESAEMRTLAESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMP 141
+G + P K+ +P E E R E + + I V + I ++ K L+E V++P
Sbjct: 96 DGENPTPAKAEVPDNEF-EKRIRPEVIPANEI----GVTFGDIGAMDEIKESLQELVMLP 260
Query: 142 IKYPKYFTG-LLSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSE 200
++ P F G LL P +GILLFGPPGTGKTMLA A+A E +F N+S S+I SKW G+ E
Sbjct: 261 LRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAXAIANEAGASFINVSMSTITSKWFGEDE 440
Query: 201 KLVKVLFELARHHAPATIFLDEIDAIISQRGEGRSEHEASRRLKTELLIQMDG-LARTDE 259
K V+ LF LA AP IF+DE+D+++ QR EHEA R++K E + DG L E
Sbjct: 441 KNVRALFSLAAKVAPTIIFVDEVDSMLGQRTR-VGEHEAMRKIKNEFMTHWDGLLTAPGE 617
Query: 260 LVFVLAATNLPWELDAAMLRRLEKR 284
+ VLAATN P++LD A++RR E+R
Sbjct: 618 QILVLAATNRPFDLDEAIIRRFERR 692
>TC12787 weakly similar to UP|MSP1_YEAST (P28737) MSP1 protein (TAT-binding
homolog 4), partial (20%)
Length = 389
Score = 132 bits (331), Expect = 1e-31
Identities = 68/123 (55%), Positives = 85/123 (68%), Gaps = 2/123 (1%)
Frame = +3
Query: 134 LKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSI 191
LKE V++P+K P+ F L P KGILLFGPPGTGKTMLAKAVATE F NIS SSI
Sbjct: 12 LKELVMLPLKRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 191
Query: 192 VSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRGEGRSEHEASRRLKTELLIQM 251
SKW G+ EK VK +F LA +P+ IF+DE+D ++ +R E EHEA R++ E ++
Sbjct: 192 TSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDXMLXRR-ENPGEHEAMRKMXNEFMVHW 368
Query: 252 DGL 254
DGL
Sbjct: 369 DGL 377
>BF177891
Length = 390
Score = 130 bits (328), Expect = 3e-31
Identities = 64/121 (52%), Positives = 86/121 (70%), Gaps = 2/121 (1%)
Frame = +1
Query: 136 EAVVMPIKYPKYFT--GLLSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVS 193
E V++P++ P+ FT LL P KGILLFGPPGTGKT++AKA+ATE F ++S S++ S
Sbjct: 16 ELVILPMRRPELFTHGNLLRPVKGILLFGPPGTGKTLMAKALATEAGANFISVSGSTLTS 195
Query: 194 KWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRGEGRSEHEASRRLKTELLIQMDG 253
KW GD+EKL K LF A AP IF+DE+D+++ RG G EHEA+RR++ E + DG
Sbjct: 196 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARG-GAFEHEATRRMRNEFMAAWDG 372
Query: 254 L 254
L
Sbjct: 373 L 375
>TC15365 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {Arabidopsis
thaliana;}, partial (87%)
Length = 1385
Score = 128 bits (322), Expect = 1e-30
Identities = 80/200 (40%), Positives = 126/200 (63%), Gaps = 13/200 (6%)
Frame = +3
Query: 117 PNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 175
P+ ++ I GL+ + +KE + +PIK+P+ F L ++ KG+LL+GPPGTGKT+LA+AV
Sbjct: 312 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAV 491
Query: 176 ATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQR---GE 232
A + TF +S S +V K+ G+ ++V+ LF +AR HAP+ IF+DEID+I S R G
Sbjct: 492 AHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS 671
Query: 233 GRSEHEASRRLKTELLIQMDGLARTDELVFVLAATNLPWELDAAMLR--RLEKR------ 284
G + E R + ELL Q+DG +++ + VL ATN LD A+LR R++++
Sbjct: 672 GXGDSEVQRTM-LELLNQLDGFEASNK-IKVLMATNRIDILDQALLRPGRIDRKIEFPNP 845
Query: 285 NQKQEEQCLR-NSFLCSLMR 303
N++ + L+ +S +LMR
Sbjct: 846 NEESRQDILKIHSRRMNLMR 905
>AV408284
Length = 425
Score = 126 bits (316), Expect = 7e-30
Identities = 70/144 (48%), Positives = 94/144 (64%), Gaps = 4/144 (2%)
Frame = +1
Query: 127 LENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECNTTFF 184
LE+ K L E V++P+K P F+ LL P KG+LL+GPPGTGKTMLAKA+A E F
Sbjct: 1 LESIKEALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFI 180
Query: 185 NISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRGEGRSEHEASRRLK 244
N+ S+++SKW GD++KLV +F LA PA IF+DE+D+ + QR ++HEA +K
Sbjct: 181 NVRISNLMSKWFGDAQKLVAAVFSLAHKLQPAIIFIDEVDSFLGQR--RTTDHEALLNMK 354
Query: 245 TELLIQMDGLARTDE--LVFVLAA 266
TE + DG TD+ V VLAA
Sbjct: 355 TEFMALWDGFT-TDQNARVMVLAA 423
>TC9489 homologue to UP|Q9SEI5 (Q9SEI5) 26S proteasome AAA-ATPase subunit
RPT2a, partial (69%)
Length = 916
Score = 115 bits (287), Expect = 2e-26
Identities = 68/170 (40%), Positives = 105/170 (61%), Gaps = 3/170 (1%)
Frame = +1
Query: 113 IRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTML 171
+ +P + I GL+ + +KEAV +P+ +P+ + + + P KG++L+G PGTGKT+L
Sbjct: 355 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLL 534
Query: 172 AKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRG 231
AKAVA + TF + S ++ K+ GD KLV+ LF +A +P+ +F+DEIDA+ ++R
Sbjct: 535 AKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRY 714
Query: 232 EGRSEHEAS-RRLKTELLIQMDGL-ARTDELVFVLAATNLPWELDAAMLR 279
+ S E +R ELL Q+DG +R D V V+ ATN LD A+LR
Sbjct: 715 DAHSGGEREIQRTMLELLNQLDGFDSRGD--VKVILATNRIESLDPALLR 858
>TC16349 homologue to UP|PRS6_SOLTU (P54778) 26S protease regulatory subunit
6B homolog, partial (65%)
Length = 901
Score = 111 bits (278), Expect = 2e-25
Identities = 61/164 (37%), Positives = 100/164 (60%), Gaps = 2/164 (1%)
Frame = +3
Query: 92 LLPPFESAEMRTLAESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL 151
+LPP + + L++S P+V + I G + K+ ++EAV +P+ + + + +
Sbjct: 429 VLPPEADSSISLLSQS-------EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQI 587
Query: 152 -LSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELA 210
+ P +G+LL+GPPGTGKTMLAKAVA F + S V K+ G+ ++V+ +F LA
Sbjct: 588 GIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLA 767
Query: 211 RHHAPATIFLDEIDAIISQRGEGRSEHEAS-RRLKTELLIQMDG 253
+ +APA IF+DE+DAI + R + ++ + +R+ ELL QMDG
Sbjct: 768 KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG 899
>TC14911 homologue to UP|Q93X55 (Q93X55) Peroxin 6 (Fragment), partial (32%)
Length = 1418
Score = 110 bits (275), Expect = 4e-25
Identities = 50/115 (43%), Positives = 75/115 (64%)
Frame = +2
Query: 117 PNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVA 176
PNVKWE + GLE+ K+ + + V +P+ + F L G+LL+GPPGTGKT+LAKAVA
Sbjct: 209 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFASGLRKRSGVLLYGPPGTGKTLLAKAVA 388
Query: 177 TECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRG 231
TEC+ F ++ +++ + G+SEK V+ +F+ AR P IF DE+D++ G
Sbjct: 389 TECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPASG 553
>CB826675
Length = 551
Score = 105 bits (261), Expect = 2e-23
Identities = 57/141 (40%), Positives = 87/141 (61%), Gaps = 2/141 (1%)
Frame = +1
Query: 117 PNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 175
P + + GLE + L EA+V+P+ + + F L + P KG+LL+GPPGTGKT++A+A
Sbjct: 121 PTEDYNDVGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARAC 300
Query: 176 ATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRGEGR- 234
A + N TF ++ +V + GD KLV+ F+LA+ +P IF+DEIDAI ++R +
Sbjct: 301 AAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV 480
Query: 235 SEHEASRRLKTELLIQMDGLA 255
S +R ELL Q+DG +
Sbjct: 481 SGDREVQRTMLELLNQLDGFS 543
>TC10267 similar to UP|Q7XXR9 (Q7XXR9) Katanin, partial (20%)
Length = 562
Score = 79.0 bits (193), Expect(2) = 2e-22
Identities = 35/44 (79%), Positives = 41/44 (92%)
Frame = +1
Query: 351 KKLPKVGPVVPEDVEAALRNTRPSAHLLAHKYDTFNADYGSQIL 394
++LPKVGP+ PED++AAL+NTRPSAHL AHKYD FNADYGSQIL
Sbjct: 100 EELPKVGPIRPEDIQAALKNTRPSAHLHAHKYDKFNADYGSQIL 231
Score = 43.1 bits (100), Expect(2) = 2e-22
Identities = 23/39 (58%), Positives = 28/39 (70%), Gaps = 1/39 (2%)
Frame = +2
Query: 320 ARIFAYFVKKQQCSH*DA**HNLNKNQMWCPKK-LPKVG 357
ARI FVK+ QCS *D * HNLN+ ++WC KK PK+G
Sbjct: 5 ARISDCFVKR*QCSL*DV*CHNLNREKIWCLKKSYPKLG 121
>AV421390
Length = 409
Score = 81.3 bits (199), Expect = 3e-16
Identities = 52/115 (45%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Frame = +2
Query: 118 NVK-WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW-KGILLFGPPGTGKTMLAKAV 175
NVK ++ +KG ++AK+ L+E VV ++ P FT L KGILL G PGTGKT+LAKA+
Sbjct: 56 NVKTFKDVKGCDDAKQELEE-VVEYLRNPAKFTRLGGKLPKGILLTGAPGTGKTLLAKAI 232
Query: 176 ATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQR 230
A E FF + S + G + V+ LF+ A+ AP IF+DEIDA+ S R
Sbjct: 233 AGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTR 397
>TC9326 homologue to UP|Q93WX4 (Q93WX4) Suppressor of K+ transport growth
defect-like protein (Fragment), partial (73%)
Length = 894
Score = 80.1 bits (196), Expect = 6e-16
Identities = 40/66 (60%), Positives = 51/66 (76%)
Frame = +2
Query: 219 FLDEIDAIISQRGEGRSEHEASRRLKTELLIQMDGLARTDELVFVLAATNLPWELDAAML 278
F+DEID++ QRGEG +E EASRR+KTELL+QM G+ D+ V VLAATN P+ LD A+
Sbjct: 20 FVDEIDSLCGQRGEG-NESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIR 196
Query: 279 RRLEKR 284
RR +KR
Sbjct: 197 RRFDKR 214
>TC16655 homologue to UP|O99018 (O99018) Chloroplast protease precursor,
partial (39%)
Length = 934
Score = 71.2 bits (173), Expect = 3e-13
Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 2/114 (1%)
Frame = +3
Query: 103 TLAESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFT--GLLSPWKGILL 160
T +S ++ + + V ++ + G++ AK+ E V +K P+ FT G P KG+LL
Sbjct: 597 TFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIP-KGVLL 770
Query: 161 FGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHA 214
GPPGTGKT+LAKA+A E FF+IS S V + G V+ LF+ A+ +A
Sbjct: 771 IGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENA 932
>TC10924 homologue to UP|Q8H9D4 (Q8H9D4) 26S proteasome AAA-ATPase subunit
RPT4a, partial (49%)
Length = 648
Score = 62.4 bits (150), Expect = 1e-10
Identities = 28/67 (41%), Positives = 47/67 (69%), Gaps = 1/67 (1%)
Frame = +2
Query: 118 NVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 176
NV + ++ GL + R L+E++ +P+ P+ F + + P KG+LL+GPPGTGKT+LA+A+A
Sbjct: 446 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 625
Query: 177 TECNTTF 183
+ + F
Sbjct: 626 SNIDANF 646
>AV422700
Length = 472
Score = 59.7 bits (143), Expect = 8e-10
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Frame = +2
Query: 118 NVKW---ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW-KGILLFGPPGTGKTMLAK 173
N +W E+I G A L+E ++ P ++ L W +G+LL+GPPGTGKT L +
Sbjct: 185 NNQWRAEEAIGGNTEALEALRELIIFPQRFSHEARKLGLKWPRGLLLYGPPGTGKTSLVR 364
Query: 174 AVATECNTTFFNISASSIVSKWRGDSEKLVKVLF 207
AV EC IS S+ G+SE++++ F
Sbjct: 365 AVVQECGAHLTIISPHSVHRAHAGESERILREAF 466
>TC9051 UP|PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 (26S
proteasome subunit 7) (26S proteasome AAA-ATPase subunit
RPT1a) (Regulatory particle triple-A ATPase subunit 1a),
partial (46%)
Length = 867
Score = 54.3 bits (129), Expect = 3e-08
Identities = 37/103 (35%), Positives = 59/103 (56%), Gaps = 4/103 (3%)
Frame = +2
Query: 186 ISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQR-GEGRSEHEASRRLK 244
+ S +V K+ G+ ++V+ LF++AR +F DE+DAI R +G +R
Sbjct: 8 VIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM 187
Query: 245 TELLIQMDGL-ARTDELVFVLAATNLPWELDAAMLR--RLEKR 284
E++ Q+DG AR + + VL ATN P LD A+LR RL+++
Sbjct: 188 LEIVNQLDGFDARGN--IKVLMATNRPDTLDPALLRPGRLDRK 310
>CN825067
Length = 687
Score = 53.5 bits (127), Expect = 6e-08
Identities = 35/131 (26%), Positives = 67/131 (50%)
Frame = +1
Query: 153 SPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARH 212
+P++ +L +GPPGTGKTM A+ +A + + ++ + K+ ++ +
Sbjct: 184 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGSQAVTKIHELFDWSKKS 363
Query: 213 HAPATIFLDEIDAIISQRGEGRSEHEASRRLKTELLIQMDGLARTDELVFVLAATNLPWE 272
+F+DE DA + +R + EA R LL + ++ ++V L ATN P +
Sbjct: 364 KRGLLLFIDEADAFLCERNKTYMS-EAQRSALNALLFRTGD--QSKDIVLAL-ATNRPGD 531
Query: 273 LDAAMLRRLEK 283
LD+A+ R+++
Sbjct: 532 LDSAVADRIDE 564
>CN825587
Length = 663
Score = 50.8 bits (120), Expect = 4e-07
Identities = 31/71 (43%), Positives = 43/71 (59%), Gaps = 1/71 (1%)
Frame = +2
Query: 210 ARHHAPATIFLDEIDAIISQRGEG-RSEHEASRRLKTELLIQMDGLARTDELVFVLAATN 268
A+ AP +F+DEIDA+ QRG G ++ + +LL +MDG + V VLAATN
Sbjct: 2 AKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSG-VIVLAATN 178
Query: 269 LPWELDAAMLR 279
P LD+A+LR
Sbjct: 179 RPDVLDSALLR 211
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.136 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,594,217
Number of Sequences: 28460
Number of extensions: 84898
Number of successful extensions: 490
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of query: 394
length of database: 4,897,600
effective HSP length: 92
effective length of query: 302
effective length of database: 2,279,280
effective search space: 688342560
effective search space used: 688342560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Medicago: description of AC146651.7