BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146650.9 - phase: 0 /pseudo
(314 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP055826 31 0.31
TC16202 similar to UP|Q9GFF4 (Q9GFF4) Photosystem II D2 protein ... 29 0.90
BP073425 29 1.2
AV408677 28 2.0
TC14073 homologue to UP|AAQ08403 (AAQ08403) Methionine synthase,... 28 2.0
AV422234 28 2.6
BP037950 28 2.6
BP059691 26 10.0
TC15220 26 10.0
TC10849 similar to UP|Q9XHC5 (Q9XHC5) Precursor monofunctional a... 26 10.0
TC17687 weakly similar to GB|AAH05628.1|13542865|BC005628 acidic... 26 10.0
TC17205 weakly similar to PIR|S50830|S50830 Machado-Joseph disea... 26 10.0
TC16799 26 10.0
>BP055826
Length = 544
Score = 30.8 bits (68), Expect = 0.31
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 138 HCLVDLLHGWQDGKLPVDITCVISNHHRDSNTHVIRFL 175
HC + GWQ KL +D C+ ++ ++ H++RFL
Sbjct: 174 HCSKGVFVGWQKLKLELDFNCICTD-SKNKLDHLVRFL 64
>TC16202 similar to UP|Q9GFF4 (Q9GFF4) Photosystem II D2 protein (Fragment),
partial (24%)
Length = 667
Score = 29.3 bits (64), Expect = 0.90
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -1
Query: 9 SQVLGLTNSNKIRNFSFKSLDLPPLPSPSL--SHGIHVFHCP 48
S G T+ N + F++L LP + SP+L H +FHCP
Sbjct: 385 SSFWGQTSHNLKQIVHFRALPLPLITSPALLLCHFHSIFHCP 260
>BP073425
Length = 392
Score = 28.9 bits (63), Expect = 1.2
Identities = 19/53 (35%), Positives = 25/53 (46%)
Frame = -3
Query: 13 GLTNSNKIRNFSFKSLDLPPLPSPSLSHGIHVFHCPDAVGIVAKLSECIASRG 65
G TNS+ + N S SL PSPS H H DA+ + ++ I RG
Sbjct: 378 G*TNSHFLANRSASSLSHAGSPSPSPHHPDRSHHQMDALAVASRGRGPIQGRG 220
>AV408677
Length = 209
Score = 28.1 bits (61), Expect = 2.0
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 4 VVRRVSQVLGLTNSNKIRNFSFKSLDLPPLPSPSLSHGI 42
VV RV+Q LGL + +KIR S P P P G+
Sbjct: 26 VVTRVAQHLGLNDPSKIRLTSHNCYSQLPKPQPIKYRGV 142
>TC14073 homologue to UP|AAQ08403 (AAQ08403) Methionine synthase, complete
Length = 2757
Score = 28.1 bits (61), Expect = 2.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 158 CVISNHHRDSNTHVIRFLERHGIPYH 183
C S HH D ++HV+ L+RH +H
Sbjct: 2081 CWCSGHHSDPHSHVLLQLQRHHPLHH 2158
>AV422234
Length = 451
Score = 27.7 bits (60), Expect = 2.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 157 TCVISNHHRDSNTH 170
TC++S+HHR SN H
Sbjct: 282 TCLVSHHHRHSNRH 323
>BP037950
Length = 529
Score = 27.7 bits (60), Expect = 2.6
Identities = 11/38 (28%), Positives = 23/38 (59%)
Frame = -2
Query: 206 FLVLARYMQATGMT*LTFTMVCCHHSRVVIHLNRLLRL 243
FL + + + G+ + +++ CHH ++++HL LL L
Sbjct: 528 FLKILQELNDVGLPITSNSLLMCHHLKLLVHLIHLLLL 415
>BP059691
Length = 182
Score = 25.8 bits (55), Expect = 10.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 3 MVVRRVSQVLGLTNSNKIRNFSFKSLDLPPLPSPSLSHG 41
M R + ++ + N + NFS SL L P+ SHG
Sbjct: 58 MYYR*IMEIRKMIRENFMHNFSITSLQLHHFGVPASSHG 174
>TC15220
Length = 510
Score = 25.8 bits (55), Expect = 10.0
Identities = 14/38 (36%), Positives = 18/38 (46%)
Frame = -2
Query: 22 NFSFKSLDLPPLPSPSLSHGIHVFHCPDAVGIVAKLSE 59
NF F+ P SLS HVFHC A ++ L +
Sbjct: 503 NFHFQGSKHPTKFLNSLSRSEHVFHCLFASFVIGALRQ 390
>TC10849 similar to UP|Q9XHC5 (Q9XHC5) Precursor monofunctional
aspartokinase (Aspartate kinase) , partial (43%)
Length = 902
Score = 25.8 bits (55), Expect = 10.0
Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +1
Query: 31 PPLPSPSLSHGIHVFHCPDAVGIVAKLS-ECIASRGGNIL 69
PPL S SLS I P A AK S C A+R N L
Sbjct: 61 PPLSSSSLSRRIGFAAFPGAAAATAKFSVTCNAARATNDL 180
>TC17687 weakly similar to GB|AAH05628.1|13542865|BC005628 acidic nuclear
phosphoprotein 32 family, member B {Mus musculus;},
partial (9%)
Length = 702
Score = 25.8 bits (55), Expect = 10.0
Identities = 15/41 (36%), Positives = 24/41 (57%)
Frame = -1
Query: 24 SFKSLDLPPLPSPSLSHGIHVFHCPDAVGIVAKLSECIASR 64
SF S + PP SPS H ++ CP +V ++++ IAS+
Sbjct: 294 SFVSQNSPPGASPSPFHNFELYICP-SVTTQPRVTQ*IASQ 175
>TC17205 weakly similar to PIR|S50830|S50830 Machado-Joseph disease MJD1a
protein - human {Homo sapiens;}, partial (7%)
Length = 528
Score = 25.8 bits (55), Expect = 10.0
Identities = 12/35 (34%), Positives = 21/35 (59%)
Frame = +1
Query: 161 SNHHRDSNTHVIRFLERHGIPYHCLSTTNENKREG 195
+ HH +++TH+ + + +HG PY + TN N G
Sbjct: 244 TTHHDNTDTHIQQPI-KHGYPYS--AKTNNNNSNG 339
>TC16799
Length = 507
Score = 25.8 bits (55), Expect = 10.0
Identities = 12/34 (35%), Positives = 16/34 (46%)
Frame = -1
Query: 158 CVISNHHRDSNTHVIRFLERHGIPYHCLSTTNEN 191
C S H + H I+ +RH I + LST N
Sbjct: 450 CTRSKHKNTNQCHSIKLQKRHMISFFGLSTVLNN 349
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.333 0.144 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,223,736
Number of Sequences: 28460
Number of extensions: 91470
Number of successful extensions: 879
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of query: 314
length of database: 4,897,600
effective HSP length: 90
effective length of query: 224
effective length of database: 2,336,200
effective search space: 523308800
effective search space used: 523308800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)
Medicago: description of AC146650.9