TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146649.9 - phase: 0 /pseudo
         (1684 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP066094                                                               83  2e-17
BP084332                                                               81  2e-15
TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, parti...    37  0.034
TC14264 similar to UP|Q84NF9 (Q84NF9) Histone H1 (Fragment), par...    35  0.098
AV421607                                                               34  0.17
TC17853 similar to UP|Q42412 (Q42412) RNA-binding protein RZ-1, ...    33  0.37
TC17386 similar to UP|Q9LU46 (Q9LU46) DEAD-box protein abstrakt,...    33  0.49
AV773507                                                               32  0.63
TC18419                                                                31  1.4
BP066447                                                               31  1.4
TC18665 similar to UP|O23061 (O23061) BAC IG005I10, partial (65%)      31  1.8
BP053005                                                               30  2.4
TC18927 similar to PIR|AI2934|AI2934 chromate transport protein ...    30  3.1
TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protei...    30  3.1
TC15522                                                                30  3.1
TC8074 similar to UP|AAQ72789 (AAQ72789) 60S ribosomal protein L...    30  3.1
AV779081                                                               30  4.1
BP053073                                                               29  5.4
TC14934 similar to UP|Q9LSN8 (Q9LSN8) Protein phosphatase 2C-lik...    29  5.4
TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%)    29  5.4

>BP066094 
          Length = 532

 Score = 83.2 bits (204), Expect(2) = 2e-17
 Identities = 59/143 (41%), Positives = 84/143 (58%)
 Frame = +1

Query: 1261 GSNQVTSILCN*SWHNIISNGCQKCFS*WCH*RRSVCQTTSWV*GS*AS*PCL*T**ITI 1320
            GS Q T ++ + S HN  S+ C +C S W H R S+C +T         *P      I++
Sbjct: 94   GSYQTTDLILSESQHNSSSDEC*ECLSKWLHLRGSLCSSTPRFXR*EEL*PYFQIEEISL 273

Query: 1321 RLETSSQSLV**TK*FLN*K*F*KRTS*HNTFQKDS*ERHFDCANIC**YNIWFY*CISL 1380
              E SSQS+V* T+   + K*  K  S +N+  ++    + +CAN+C**Y IW  * IS+
Sbjct: 274  WSEASSQSMV*ETQLIPSGK*VXKG*SRYNSLLQNLQR*YINCANLC**YYIWIC*SISM 453

Query: 1381 QGIF*VNAG*I*NEHDGRIEVLS 1403
            Q +F* +AG*I*N +DGR ++LS
Sbjct: 454  QRVF*DDAG*I*NAYDGRTQILS 522



 Score = 24.3 bits (51), Expect(2) = 2e-17
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 1241 RIQSTRRH*LY*NICSSCK 1259
            ++QS  R+ LY*N+CS  K
Sbjct: 35   KVQSAVRNRLY*NVCSGSK 91


>BP084332 
          Length = 368

 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 48/109 (44%), Positives = 66/109 (60%)
 Frame = +1

Query: 1564 NYCYVYSKSRIHFSCKLLYTTTLDETSVGRLSD*C*QYSHLL**YCCYLFVKESNSTFKS 1623
            N+C +Y + RI+ S  + ++  LDETS G LS+   QY +LL**+CC     ES  TFK 
Sbjct: 37   NHCTIYCRGRIYLSSNMQHSDALDETSAGGLSNP*EQYPNLL**HCCNFIE*ESYLTFKG 216

Query: 1624 QAY*DQTPFYQRLCSKRNFRYTIH*Y*ASMG*YIYKAFIC*KI*FYKEK 1672
            +A+* +   Y RLC++      + *Y* SMG Y+YKA     I*F+ EK
Sbjct: 217  KAH*GKVSLY*RLCTEGRTSSEVC*Y*PSMGRYLYKALSRG*I*FHSEK 363


>TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (26%)
          Length = 555

 Score = 36.6 bits (83), Expect = 0.034
 Identities = 16/45 (35%), Positives = 28/45 (61%), Gaps = 8/45 (17%)
 Frame = +2

Query: 275 KKFLSKRNGYKN--WKREDQKG------CFNCKKPGHFIADCPDL 311
           +K  S R  Y++  ++R+ ++G      C NCK+PGHF  +CP++
Sbjct: 260 RKIRSDRFSYRDAPYRRDSRRGFSRDNLCKNCKRPGHFARECPNV 394



 Score = 31.2 bits (69), Expect = 1.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 295 CFNCKKPGHFIADCPD 310
           C+NCK+PGH  + CP+
Sbjct: 458 CWNCKEPGHMASSCPN 505



 Score = 29.6 bits (65), Expect = 4.1
 Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
 Frame = +2

Query: 230 KSSKSSKAYKASESEEESPDGDSDEDHSVKMAMLSNKLEYLARKQKKFLSKRNGYKNWKR 289
           K   SS +   S S   SP      D  ++    S +     R  ++  S+ N  KN KR
Sbjct: 197 KRKMSSDSRSRSRSRSRSP-----MDRKIRSDRFSYRDAPYRRDSRRGFSRDNLCKNCKR 361

Query: 290 EDQKG--------CFNCKKPGHFIADC 308
                        C NC  PGH  ++C
Sbjct: 362 PGHFARECPNVAICHNCGLPGHIASEC 442


>TC14264 similar to UP|Q84NF9 (Q84NF9) Histone H1 (Fragment), partial (76%)
          Length = 1277

 Score = 35.0 bits (79), Expect = 0.098
 Identities = 41/171 (23%), Positives = 65/171 (37%), Gaps = 14/171 (8%)
 Frame = +2

Query: 530 LKSTF-VPEGTNVVTAVQSEPEA-----------SGSKAKIISKPENLKSKVMTKPDPKT 577
           +K++F +P   +   A  S+P A           S  K K  +KP    +K   KP PK+
Sbjct: 419 VKNSFKLPSAKSSAAAAASKPAAAKKKPQPAAAKSKPKPKAKAKPAAAATKAKAKPAPKS 598

Query: 578 PKIKILKRSESVPQSLIKPESK-ILKPKD-QKNKAVTASEKTIPKGVKPKVLNDHKLLST 635
                   +++ P +  KP++K   K K   K KAV A  K              K    
Sbjct: 599 KAAATKTTAKAKPAAAAKPKAKPAAKAKPAAKAKAVAAPAKA-------------KASPA 739

Query: 636 YPKVQGRKSKISRINPKGPMKIWVPKSELIKTAGVPKGKRETKVMVPRQRV 686
            PK + +     R+N   P+    P ++    A   K  R +    P ++V
Sbjct: 740 KPKAKAKSKTAPRMNVNPPVPKAKPAAKAKPAARPAKASRTSTRTTPGKKV 892


>AV421607 
          Length = 245

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 9/52 (17%)
 Frame = +3

Query: 294 GCFNCKKPGHFIADCPDLQKEKSKS---------RPKKPSFSSSKFRKQIKK 336
           GC+ C +PGH+  DCP      + +          P  PS SS K R  ++K
Sbjct: 51  GCYKCGRPGHWSRDCPSSAPNSNPNPNPNTTTTPNPLLPSSSSFKPRSAVEK 206


>TC17853 similar to UP|Q42412 (Q42412) RNA-binding protein RZ-1, partial
           (58%)
          Length = 881

 Score = 33.1 bits (74), Expect = 0.37
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 280 KRNGYKNWKREDQKGCFNCKKPGHFIADCP 309
           +  GY   +  +   CF C KPGHF  +CP
Sbjct: 374 RSRGYGGSRGSNGGECFKCGKPGHFARECP 463


>TC17386 similar to UP|Q9LU46 (Q9LU46) DEAD-box protein abstrakt, partial
           (19%)
          Length = 507

 Score = 32.7 bits (73), Expect = 0.49
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 293 KGCFNCKKPGHFIADCPDLQKEKSK--SRPKKPSFSSSKFRKQIKK 336
           KGC  C   GH I DCP L+ +KS   +  +   F S  +R +I K
Sbjct: 203 KGCAYCGGLGHRIRDCPKLEHQKSMAIANNRHDYFGSGGYRGEI*K 340


>AV773507 
          Length = 496

 Score = 32.3 bits (72), Expect = 0.63
 Identities = 13/29 (44%), Positives = 14/29 (47%)
 Frame = +2

Query: 281 RNGYKNWKREDQKGCFNCKKPGHFIADCP 309
           R  Y    R  Q  CF C +PGH   DCP
Sbjct: 308 RGSYGAGDRVGQDDCFECGRPGHRARDCP 394


>TC18419 
          Length = 409

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 20/65 (30%), Positives = 28/65 (42%)
 Frame = -1

Query: 656 KIWVPKSELIKTAGVPKGKRETKVMVPRQRVFKAYDRRESFVPYPYHERWRRSEVWWQPN 715
           ++ VP  E+    GVP G R  +  V  + V   + R       P+ +R R    WW  N
Sbjct: 310 RVVVPMGEV---EGVPPGGRR-RPPVRAEEVRWGFWRGGGS*AIPWKKRKREGNRWWFWN 143

Query: 716 WKDHW 720
           W D W
Sbjct: 142 WNDEW 128


>BP066447 
          Length = 320

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 25/102 (24%), Positives = 42/102 (40%)
 Frame = +2

Query: 558 IISKPENLKSKVMTKPDPKTPKIKILKRSESVPQSLIKPESKILKPKDQKNKAVTASEKT 617
           I  KP  L  K      P TPK+K+L ++ + P     PE+      +Q+   +   +K 
Sbjct: 71  IPQKPPTLPQK------PNTPKLKLLTKNRNFPPMH*TPET------NQRETRINPKQKN 214

Query: 618 IPKGVKPKVLNDHKLLSTYPKVQGRKSKISRINPKGPMKIWV 659
             +   PK+L          K++  KS+    N  G  ++ V
Sbjct: 215 TNRLKXPKILG---------KIENGKSRTKTANRDGEWRLKV 313


>TC18665 similar to UP|O23061 (O23061) BAC IG005I10, partial (65%)
          Length = 451

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = -2

Query: 343 EDLDSESGSDKEEADDDAKAAMRLVATVSSEAVSESESDSEDENEVYSKIPRQE 396
           EDLDS+   D+E  DDD             EA  E+     DE+EV  + P  E
Sbjct: 189 EDLDSDGFRDEEIGDDDEGEGEE-----EDEATEEASGFDGDEHEVRERAPGDE 43


>BP053005 
          Length = 512

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 20/76 (26%), Positives = 31/76 (40%)
 Frame = -1

Query: 511 EEKSKEYSLKSYCDCIKDGLKSTFVPEGTNVVTAVQSEPEASGSKAKIISKPENLKSKVM 570
           +  S  YS  S+C   K+GLK   +    N     +S P  S    ++ S P        
Sbjct: 275 QSPSTIYSTPSHCHLTKEGLKKFCINPDQNKQ*NPKSRPSPSSKLPQLFSSP------TT 114

Query: 571 TKPDPKTPKIKILKRS 586
            KP+P+ P    + R+
Sbjct: 113 PKPNPRYPARMTIART 66


>TC18927 similar to PIR|AI2934|AI2934 chromate transport protein chrA
           [imported] - Agrobacterium                tumefaciens
           (strain C58, Dupont) {Agrobacterium tumefaciens;},
           partial (6%)
          Length = 561

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 16/65 (24%), Positives = 34/65 (51%), Gaps = 2/65 (3%)
 Frame = -2

Query: 295 CFNCKKPGHFIADC--PDLQKEKSKSRPKKPSFSSSKFRKQIKKSLMATWEDLDSESGSD 352
           C+NC+K GH   DC  P ++   +    ++P+ +++K ++ +  + + T       SG++
Sbjct: 275 CWNCQKTGHSGKDCTNPKVEAATNAIAARRPAPAANKGKRPVASARVYT------VSGAE 114

Query: 353 KEEAD 357
              AD
Sbjct: 113 SHRAD 99



 Score = 28.5 bits (62), Expect = 9.2
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 295 CFNCKKPGHFIADCPDL 311
           C  C K GHF   CPDL
Sbjct: 329 CHRCSKKGHFANRCPDL 279


>TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protein, partial
           (25%)
          Length = 1077

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
 Frame = -1

Query: 698 PYPYHERWR-RSEVWWQPNW----KDHWYRYYW 725
           P  + E+WR R E WW   W       WY Y+W
Sbjct: 816 PARWREQWRERREKWWWRRWWWWWS*TWYYYWW 718


>TC15522 
          Length = 1383

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 9/146 (6%)
 Frame = +1

Query: 158 LKKSYVTSDLVSKILRSLPSRWRPKVTAIEEAKD------LNTLSVEDLVSSLKVHEMSL 211
           L K  +T+ L   +  + PS   P  +     K       LN+ +++    +     ++L
Sbjct: 283 LGKQKLTTSLAKSLDFASPSSASPSSSVFSPMKSYFSSPCLNSFTMQ----APNPESLAL 450

Query: 212 NEHESSKKSKSIALPSKGKSSKSSKAYKASESEEESPDGDSDEDHSVKMAMLSNK---LE 268
           N+  +SKK  S + P K  + +S          EE+ D  + ED +    ++  K   L 
Sbjct: 451 NKDVNSKKGSSSSSPMKCDAPRS----------EETSDSVTTEDLNHLCQLVEEKDGGLP 600

Query: 269 YLARKQKKFLSKRNGYKNWKREDQKG 294
           ++    +   +   GYK W+RE + G
Sbjct: 601 WIQMMDRS--TPTMGYKAWRREPKDG 672


>TC8074 similar to UP|AAQ72789 (AAQ72789) 60S ribosomal protein L5, partial
           (96%)
          Length = 1086

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 15/52 (28%), Positives = 31/52 (58%), Gaps = 1/52 (1%)
 Frame = +3

Query: 309 PDLQKEKSKSRPKKPSFSSSKFRKQIKKS-LMATWEDLDSESGSDKEEADDD 359
           P ++K + K   K   ++  K   + +K+ L+A  + L+S +G+D++E DD+
Sbjct: 744 PTIKKAEKKPPKKSKRYNLKKLTYEERKAKLIARLQALNSAAGADEDEEDDE 899


>AV779081 
          Length = 467

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 13/47 (27%), Positives = 26/47 (54%)
 Frame = -2

Query: 531 KSTFVPEGTNVVTAVQSEPEASGSKAKIISKPENLKSKVMTKPDPKT 577
           +S  VP     +TA+ S PEA+G++  ++   EN++   +    P++
Sbjct: 355 RSVLVPASGLPLTAIPSSPEANGNRCTLLLGLENIR*NFLQPTKPRS 215


>BP053073 
          Length = 456

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 365 RLVATVSSEAVSESESDSEDENEVYSKIPRQELID 399
           R+ + V S+ V+ S + ++DE E+Y  I  QE++D
Sbjct: 165 RVASAVFSQEVNNSVAFTQDEPEIYLPIKAQEIMD 269


>TC14934 similar to UP|Q9LSN8 (Q9LSN8) Protein phosphatase 2C-like protein,
           partial (57%)
          Length = 932

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 22/77 (28%), Positives = 31/77 (39%)
 Frame = +1

Query: 318 SRPKKPSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAMRLVATVSSEAVSE 377
           S P +PS S   F           WE L +E   D   ++  A +A RLV     EA  +
Sbjct: 379 SHPLQPSDSFLIFASD------GLWEHLSNEQAVDIVHSNPRAGSAKRLVKAALQEAARK 540

Query: 378 SESDSEDENEVYSKIPR 394
            E    D  ++  K+ R
Sbjct: 541 REMRYSDLRKIDKKVRR 591


>TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%)
          Length = 1093

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 47/212 (22%), Positives = 85/212 (39%), Gaps = 10/212 (4%)
 Frame = +2

Query: 54  DEEGAAIDRKIHTPAQKKTYKKHHKIRGIIVASIPRTEYMKMS--------DKSTAKAMF 105
           D+E  + + +  + AQKKT KK  K  G    +  RT+  K +        DK+  K+  
Sbjct: 77  DDESKSEEEEDKSKAQKKTSKKIVK-EGSGSKAGERTKSAKKTPVKSSKNVDKTPKKSTP 253

Query: 106 ASLCANYEGSKKVREAKALMLVHQYELFKMKDDESIEEMYSRFQTLVSGLQILKKSYVTS 165
               A ++ S     +K+     +    + +  ++  +  S+ QT  S   ++K    + 
Sbjct: 254 KQTAAEHD-SASASLSKSKQPASKKRKTENEKPDTKGKASSKKQTDKSSKALVKDQGKSK 430

Query: 166 DLVSKILRSLPSRWRPKVTAIEEAK--DLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSI 223
               K  +++PSR       ++  K  D NT ++ D++  L  H      H  ++    I
Sbjct: 431 S--GKKAKAVPSREAMHAVVVDILKEVDFNTATLSDILRPLGTHFGVDLMHRKAEVKDII 604

Query: 224 ALPSKGKSSKSSKAYKASESEEESPDGDSDED 255
                  S +        E EE   DGD+D+D
Sbjct: 605 TDVINNMSDEED------EGEEADGDGDADKD 682



 Score = 28.9 bits (63), Expect = 7.0
 Identities = 28/93 (30%), Positives = 37/93 (39%)
 Frame = +2

Query: 550 EASGSKAKIISKPENLKSKVMTKPDPKTPKIKILKRSESVPQSLIKPESKILKPKDQKNK 609
           E SGSKA   +K         +K   KTPK    K++ +   S     SK  +P  +K K
Sbjct: 152 EGSGSKAGERTKSAKKTPVKSSKNVDKTPKKSTPKQTAAEHDSASASLSKSKQPASKKRK 331

Query: 610 AVTASEKTIPKGVKPKVLNDHKLLSTYPKVQGR 642
             T +EK   KG         K      K QG+
Sbjct: 332 --TENEKPDTKGKASSKKQTDKSSKALVKDQGK 424


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.361    0.158    0.581 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,703,189
Number of Sequences: 28460
Number of extensions: 388721
Number of successful extensions: 4857
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 3599
Number of HSP's successfully gapped in prelim test: 133
Number of HSP's that attempted gapping in prelim test: 1071
Number of HSP's gapped (non-prelim): 3956
length of query: 1684
length of database: 4,897,600
effective HSP length: 103
effective length of query: 1581
effective length of database: 1,966,220
effective search space: 3108593820
effective search space used: 3108593820
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.9 bits)
S2: 62 (28.5 bits)