TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146649.7 - phase: 0 /pseudo
         (859 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG662122                                                               35  0.039
BP033927                                                               28  8.1
BP065014                                                               28  8.1
TC9125 similar to UP|Q40316 (Q40316) Vestitone reductase, complete     28  8.1

>BG662122 
          Length = 386

 Score = 35.4 bits (80), Expect = 0.039
 Identities = 21/66 (31%), Positives = 35/66 (52%), Gaps = 3/66 (4%)
 Frame = +2

Query: 82  KRRVDKTKYCRFYKCHGHVTDHCIHLKDAIKMLIQ*GRLN*FTKNSETE---RQAVKLKT 138
           +R +D TK C + +   H  D C  LK  I+ LI+ GRL  + + S  +   +Q  +L+ 
Sbjct: 185 RRGIDTTK*CEYRRSVVHDIDDCFTLKREIEKLIKMGRLKQYDRGSRQQGDRQQGGRLQG 364

Query: 139 DGKEKN 144
           D ++ N
Sbjct: 365 DRQQGN 382


>BP033927 
          Length = 493

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 18  SESSKKPFHEKKREGKASRQGKGPGGR 44
           SES K+   ++KREG+   +G+G GGR
Sbjct: 419 SESKKR---KRKREGEGDGEGEGEGGR 490


>BP065014 
          Length = 498

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 17/31 (54%), Positives = 20/31 (63%), Gaps = 3/31 (9%)
 Frame = -3

Query: 722 KCIQTLNGMLTSLFRFV--AKSAQH-ALPFF 749
           K +QTLNG+L SL RF+  AK   H   PFF
Sbjct: 403 KTLQTLNGVLKSLSRFLTAAKRRNHWFCPFF 311


>TC9125 similar to UP|Q40316 (Q40316) Vestitone reductase, complete
          Length = 1200

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 179 IVGGTSTLSLGSMKRKFEELLSVNHLVHSRHKSGGRPPLAFTT 221
           + GGT  L+   +KR  E+  SVN  +  R  SGG+  ++F T
Sbjct: 66  VTGGTGFLASWIIKRLLEDGYSVNTTI--RSNSGGKRDVSFLT 188


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.335    0.146    0.469 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,857,262
Number of Sequences: 28460
Number of extensions: 208276
Number of successful extensions: 1488
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1488
length of query: 859
length of database: 4,897,600
effective HSP length: 98
effective length of query: 761
effective length of database: 2,108,520
effective search space: 1604583720
effective search space used: 1604583720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 59 (27.3 bits)