BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146632.4 - phase: 0
(1038 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV766088 186 1e-47
AV780009 163 1e-40
BP066094 114 2e-26
BP075943 106 2e-23
BP063902 97 1e-20
BP063694 89 3e-18
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 84 1e-16
AU088980 82 3e-16
BP084332 79 5e-15
BP057233 78 6e-15
BP043850 74 9e-14
AV424544 74 2e-13
TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%) 72 3e-13
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p... 68 8e-12
TC9337 similar to UP|PME_PRUPE (Q43062) Pectinesterase PPE8B pre... 67 1e-11
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 63 2e-10
BP033602 62 5e-10
AV767042 61 1e-09
AV427921 58 9e-09
TC10129 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (10%) 54 1e-07
>AV766088
Length = 501
Score = 186 bits (473), Expect = 1e-47
Identities = 86/137 (62%), Positives = 106/137 (76%)
Frame = -3
Query: 87 QTGMRLMRCESRGDLYPITTSQAISPSTFAALAPSLWHARLGHPGAPVVDSLRKNKFIEC 146
QTG+ LMRC S GDLYP+T S FA +A SLWH+RLGHP + + LR NKFI
Sbjct: 397 QTGIPLMRCNSPGDLYPVTLS-----FPFAGIAQSLWHSRLGHPSSSALRYLRSNKFISY 233
Query: 147 NRASGSHICHSCSLGKHIKLPFVSSNSCTIMPFDIIHSDIWTSPVLSSSGHRYYVLFVDD 206
+ S +C SC GKH++LPFVSSN+ T+MPFDI+HSD+WTSPVLSS+GHR+YVLF+DD
Sbjct: 232 ELLNYSPVCESCVFGKHVRLPFVSSNNVTVMPFDILHSDLWTSPVLSSAGHRFYVLFLDD 53
Query: 207 YSNFLWTFPLSKKSQVF 223
+++FLWTFPLS KSQVF
Sbjct: 52 FTDFLWTFPLSNKSQVF 2
>AV780009
Length = 529
Score = 163 bits (412), Expect = 1e-40
Identities = 79/169 (46%), Positives = 110/169 (64%)
Frame = -1
Query: 850 ALKRIVRYIQGTLDHGLHLYPSSTSTLISYTDADWGGCPDTRRSTSGYCVFLGDNLISWS 909
A R++RY++G GL S L +Y+D+DW GCPDTRRS +GY +FLG +LISW
Sbjct: 526 AATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISWR 347
Query: 910 AKRQATLSRSSAEAEYRGVANVVSESCWLRNLLLELHCPIRKASLVYCDNVSAIYLSGNP 969
K+Q T+SRSS+EAEYR +A V E WL L L + ++CDN SA++++ NP
Sbjct: 346 TKKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFLKLNVPLPVPLFCDNQSALHIAHNP 167
Query: 970 VQHQRTKHIEMDIHSVREKVARGEVRVLHVPSRYQIADIFTKGLPLVLF 1018
H+RTKHIE+D H VR K+ G + +L + + +Q+ADIFTK P + F
Sbjct: 166 TFHERTKHIELDCHVVRAKLQAGLIHLLPISTHHQLADIFTKPCPHLCF 20
>BP066094
Length = 532
Score = 114 bits (284), Expect(2) = 2e-26
Identities = 58/147 (39%), Positives = 88/147 (59%)
Frame = +2
Query: 610 KPATIRTVLSLALSKAWSIHQLDVKNAFLHGELKETVYMHQPMGFRDPNLPNHVCLLKKS 669
K IR ++S +++ +HQ++VK+AFL+G + E VY+HQP G D +H+ LKKS
Sbjct: 89 KTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKKS 268
Query: 670 LYGLKQAPRAWYKRFADYVSTIGFSHSTSDHSLFIYRKGTAMAYILLYVDDIILTASSDA 729
LYGLKQAPRAWY+R + ++ D +LF + + +YVDDII +++ +
Sbjct: 269 LYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANPS 448
Query: 730 LRVTIISLLSTEFAMKDLGSLHYFLGI 756
L ++ EF M+ +G L YFLGI
Sbjct: 449 LCKEFSEMMQAEFEMRMMGELKYFLGI 529
Score = 23.1 bits (48), Expect(2) = 2e-26
Identities = 9/17 (52%), Positives = 13/17 (75%)
Frame = +3
Query: 594 TQQVGVDCGETFSPVVK 610
+QQ G+D ETF+PV +
Sbjct: 42 SQQ*GIDYTETFAPVAR 92
>BP075943
Length = 547
Score = 106 bits (265), Expect = 2e-23
Identities = 63/165 (38%), Positives = 93/165 (56%), Gaps = 2/165 (1%)
Frame = -3
Query: 714 ILLYVDDIILTASSDALRVTII-SLLSTEFAMKDLGSLHYFLGIAVTHHTGGLFLSQRKY 772
+LLYVDD++L A +D + ++ S L +F +KDLG YFLG+ + T G+ L+QRKY
Sbjct: 521 LLLYVDDVLL-AGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKY 345
Query: 773 AAEIIERAGMAACKSSSTPVDTKPK-LSANSSAPHADPSHYRSLAGALQYLTFTRPDIAY 831
A ++I +G + T + L N+ P D YR + G L YL TRPDI +
Sbjct: 344 ALQLISDSGHFGFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNTTRPDITF 165
Query: 832 AVQQVCLFMHDPREEHMHALKRIVRYIQGTLDHGLHLYPSSTSTL 876
AV Q+ F+ P + H L ++Y+ G+ GL YP+S+STL
Sbjct: 164 AVNQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGL-FYPASSSTL 33
>BP063902
Length = 494
Score = 97.4 bits (241), Expect = 1e-20
Identities = 46/89 (51%), Positives = 59/89 (65%)
Frame = -3
Query: 83 VKDFQTGMRLMRCESRGDLYPITTSQAISPSTFAALAPSLWHARLGHPGAPVVDSLRKNK 142
++ +TGM L+RC S GDLYP+T S S FA LA S+WH RLGHP + ++ LR NK
Sbjct: 285 LRHLKTGMPLLRCNSLGDLYPVTRS-----SPFAGLASSVWHHRLGHPASSALNHLRNNK 121
Query: 143 FIECNRASGSHICHSCSLGKHIKLPFVSS 171
I C + S +C SC LGKH++LPF SS
Sbjct: 120 LIFCEPSRSSSVCDSCVLGKHVRLPFSSS 34
>BP063694
Length = 511
Score = 89.4 bits (220), Expect = 3e-18
Identities = 54/162 (33%), Positives = 83/162 (50%), Gaps = 5/162 (3%)
Frame = -2
Query: 81 FSVKDFQTGMRLMRCESRGDLYPITT-SQAI--SPSTFAALAPSLWHARLGHPGAPVVDS 137
F +++ +TG L R LY + SQA+ + S + LWH+RLGH ++
Sbjct: 492 FVIQNRKTGAVLGRXRCDQGLYVLNQDSQALLTTSSPLPRASFELWHSRLGHVNFDIIKQ 313
Query: 138 LRKNKFIECNRASGSHIC-HSCSLGKHIKLPFVSSNSCTIMPFDIIHSDI-WTSPVLSSS 195
L K+ ++ + IC SC + K +L F +N D+IH D+ SPV S
Sbjct: 312 LHKHGCLDVSSILPKPICCTSCQMAKSKRLVFHDNNKRASAVLDLIHCDLRGPSPVASID 133
Query: 196 GHRYYVLFVDDYSNFLWTFPLSKKSQVFSIFLSFRTFIRTQF 237
G Y+V+FVDD+S F W +PL +KS + L F+ F+ +F
Sbjct: 132 GFSYFVIFVDDFSRFTWFYPLKRKSDFSDVLLRFKVFMENRF 7
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 83.6 bits (205), Expect = 1e-16
Identities = 38/77 (49%), Positives = 54/77 (69%)
Frame = +1
Query: 937 WLRNLLLELHCPIRKASLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHSVREKVARGEVRV 996
WL LL +L P + +LVYCDN SA +++ NPV H+RTKHIE+D H VRE++ +G + +
Sbjct: 4 WLTYLLQDLKVPFEQPALVYCDNNSARHIAANPVFHERTKHIEIDCHIVRERIQKGLIHL 183
Query: 997 LHVPSRYQIADIFTKGL 1013
L + S +ADI+TK L
Sbjct: 184 LPISSSEPLADIYTKAL 234
>AU088980
Length = 360
Score = 82.4 bits (202), Expect = 3e-16
Identities = 45/115 (39%), Positives = 60/115 (52%)
Frame = +2
Query: 279 NGKAERKIRTINNIIRTLLVHASLPPSFWHHALQMATYLINILPNKQLAYQSPLKILYQK 338
N ERK R I N+ R L+ H+ LP + W A++ A YLIN LP+ L Q P + L
Sbjct: 2 NSIVERKHRHILNVTRALMFHSYLPKNLWTFAVKHAAYLINXLPSPLLKGQCPYQFLNND 181
Query: 339 EPSYSHLRVFGCLCYPLFPSTTINKLQARSTPCVFLGYPSNHRSYKCYDLSSRKI 393
P+ L+VFG LCY + KL R+ CVFLG+ + Y DL + I
Sbjct: 182 SPTLLDLKVFGTLCYSSTLTHNXQKLDPRARKCVFLGFKTGTXGYIVMDLPTTXI 346
>BP084332
Length = 368
Score = 78.6 bits (192), Expect = 5e-15
Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 6/128 (4%)
Frame = +2
Query: 904 NLISWSAK-RQATLSRSSAEAEYRGVANVVSESCWLRNLL-----LELHCPIRKASLVYC 957
N+ W A Q+T++ S+AEAEY A ++ W+++ L LE + PI YC
Sbjct: 2 NVNFWEAT*GQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPI------YC 163
Query: 958 DNVSAIYLSGNPVQHQRTKHIEMDIHSVREKVARGEVRVLHVPSRYQIADIFTKGLPLVL 1017
DN +AI LS NP+ H R KHIE+ H +R+ V +G + + V + +Q ADIFTK L
Sbjct: 164 DNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDR 343
Query: 1018 FEDFRNNL 1025
F NL
Sbjct: 344 FNFILKNL 367
>BP057233
Length = 473
Score = 78.2 bits (191), Expect = 6e-15
Identities = 39/86 (45%), Positives = 56/86 (64%), Gaps = 1/86 (1%)
Frame = -2
Query: 948 PIRKASLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHSVREKVARGEVRVLHVPSRYQIAD 1007
P+ + +++CDN+SA L+ NPV H R+KHIE+D+H +R++V + EV V +VP+ QIAD
Sbjct: 466 PMPRKPILWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPTTDQIAD 287
Query: 1008 IFTKGLPLVLFEDFRNNLSV-RQPPV 1032
TK L F R+ L V PPV
Sbjct: 286 CLTKPLSHTRFSQLRDKLGVIHSPPV 209
>BP043850
Length = 515
Score = 74.3 bits (181), Expect = 9e-14
Identities = 43/104 (41%), Positives = 58/104 (55%)
Frame = -1
Query: 933 SESCWLRNLLLELHCPIRKASLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHSVREKVARG 992
SE WLR LL EL + + ++ DN SAI ++ NPV H+ T+HIE+D HSVRE R
Sbjct: 515 SEIIWLRGLLSELGFLQSQPTPLHADNTSAIQIAANPVYHEWTRHIEVDCHSVREAYDRR 336
Query: 993 EVRVLHVPSRYQIADIFTKGLPLVLFEDFRNNLSVRQPPVSTAG 1036
+ + HV + QIADI TK L + L + + P S G
Sbjct: 335 VITLPHVSTSVQIADILTKSLTRQRHNFLVSKLMLVESPASI*G 204
>AV424544
Length = 276
Score = 73.6 bits (179), Expect = 2e-13
Identities = 39/91 (42%), Positives = 57/91 (61%), Gaps = 1/91 (1%)
Frame = +3
Query: 683 RFADYVSTIGFSHSTSDHSLFIYRKGTAMAYILLYVDDIILTASSDALRVTII-SLLSTE 741
+ + Y+ +G+ S DHSLF + + IL+YVDD+IL A +D + + + L +
Sbjct: 6 KLSSYLHILGYIQSAHDHSLFTKFRDASFTVILVYVDDLIL-AGNDLNEIQCVKNKLDIQ 182
Query: 742 FAMKDLGSLHYFLGIAVTHHTGGLFLSQRKY 772
F +KDLG+L YFLG+ V + GLFLSQRKY
Sbjct: 183 FRIKDLGTLKYFLGLEVARSSCGLFLSQRKY 275
>TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%)
Length = 550
Score = 72.4 bits (176), Expect = 3e-13
Identities = 36/78 (46%), Positives = 51/78 (65%)
Frame = +3
Query: 934 ESCWLRNLLLELHCPIRKASLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHSVREKVARGE 993
E+ WL L +L ++YCDN SA++L+ N V H+RT++IE+D H V KV G
Sbjct: 21 EALWLTYALADLRIASLLLVVIYCDNRSALHLAANSVFHKRTENIEIDCHIV*VKVLFGI 200
Query: 994 VRVLHVPSRYQIADIFTK 1011
+ +LHVPS Q+AD+FTK
Sbjct: 201 LHLLHVPSSDQVADVFTK 254
>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
Length = 670
Score = 67.8 bits (164), Expect = 8e-12
Identities = 37/91 (40%), Positives = 52/91 (56%)
Frame = +1
Query: 937 WLRNLLLELHCPIRKASLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHSVREKVARGEVRV 996
WL +L +L P SL+YCD+ SA +++ N V H+RTKH+++D H VREK+ +
Sbjct: 13 WLTYILQDLRVPFISPSLLYCDSQSARHIATNAVFHERTKHLDIDCHVVREKLQAKLFHL 192
Query: 997 LHVPSRYQIADIFTKGLPLVLFEDFRNNLSV 1027
L + S Q ADI TK L F + L V
Sbjct: 193 LPISSVDQTADILTKPLESGPFSHLVSKLGV 285
>TC9337 similar to UP|PME_PRUPE (Q43062) Pectinesterase PPE8B precursor
(Pectin methylesterase) (PE) , partial (54%)
Length = 1145
Score = 67.4 bits (163), Expect = 1e-11
Identities = 27/40 (67%), Positives = 34/40 (84%)
Frame = +3
Query: 154 ICHSCSLGKHIKLPFVSSNSCTIMPFDIIHSDIWTSPVLS 193
+C SC LGKH++LPF SS + T+ PFDI+HSD+WTSPVLS
Sbjct: 1026 VCDSCVLGKHVRLPFSSSETITLRPFDILHSDLWTSPVLS 1145
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 63.2 bits (152), Expect = 2e-10
Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 9/147 (6%)
Frame = +2
Query: 684 FADYVSTIGFSHSTSDHSLFIYR-KGTAMAYILLYVDDIILTASSDALRVTIISLLSTEF 742
F ++ ++G++ +SDH + R +LLYVDD+++ + + + L+ EF
Sbjct: 2 FDSFIMSLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREF 181
Query: 743 AMKDLGSLHYFLGIAV--THHTGGLFLSQRKYAAEIIERAGMAACKSSSTPVDTKPKLSA 800
MKDLG + LG+ + ++LSQ+ Y +++ R M C STP+ KLS+
Sbjct: 182 DMKDLGPANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYKLSS 361
Query: 801 ----NSSAPHADPSH--YRSLAGALQY 821
+S A + S Y S G+L Y
Sbjct: 362 SMIPSSEAERMEMSRVPYASAVGSLMY 442
>BP033602
Length = 533
Score = 62.0 bits (149), Expect = 5e-10
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Frame = +3
Query: 122 LWHARLGHPGAPVVDSLRKNKFIECNRASGSHICHSCSLGKHIKLPFVSSNSCTIMPFDI 181
LWH RLGHP + L + F N +S C SC L K+ + P+ S PF +
Sbjct: 276 LWHNRLGHPNFQYLRHLFPDLFKNVNCSSLE--CESCVLAKNQRAPYYSQPYHASRPFYL 449
Query: 182 IHSDIW-TSPVLSSSGHRYYVLFVDDYS 208
IHSD+W S + + G R++V F+DD++
Sbjct: 450 IHSDVWGPSKITTQFGKRWFVTFIDDHT 533
>AV767042
Length = 444
Score = 60.8 bits (146), Expect = 1e-09
Identities = 27/44 (61%), Positives = 36/44 (81%)
Frame = -3
Query: 595 QQVGVDCGETFSPVVKPATIRTVLSLALSKAWSIHQLDVKNAFL 638
Q GVDC +TFSPVVKPA IRTV ++ALS++W I QL+V+N ++
Sbjct: 349 QTAGVDCNKTFSPVVKPAPIRTVFTIALSRSWPIPQLNVQNLWI 218
>AV427921
Length = 284
Score = 57.8 bits (138), Expect = 9e-09
Identities = 29/84 (34%), Positives = 46/84 (54%)
Frame = +1
Query: 274 HTSSQNGKAERKIRTINNIIRTLLVHASLPPSFWHHALQMATYLINILPNKQLAYQSPLK 333
+T QNG +ERK RTI N++R+LL + LP SF A+ + +++N P + P +
Sbjct: 19 YTPQQNGVSERKNRTILNMVRSLLTMSGLPKSFLPEAVMWSLHILNRSPTLVVQNMMPEE 198
Query: 334 ILYQKEPSYSHLRVFGCLCYPLFP 357
++P+ H R+ CL Y P
Sbjct: 199 AWSGRQPAVDHFRISRCLAYAHVP 270
>TC10129 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (10%)
Length = 562
Score = 54.3 bits (129), Expect = 1e-07
Identities = 38/124 (30%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
Frame = +1
Query: 412 HNPQPYTYGFMDDGPSPYVIHHLTSQPS-LGQPAQHDLPNTQPTTQPTTPEEQHAHSPPS 470
+N PYT P+P TSQP + P + P +QP PT P S P
Sbjct: 154 NNHPPYT-------PTPPKTPSPTSQPPYIPLPPKTPSPISQPPHVPTPPSTPSPISQPP 312
Query: 471 SSPNPSPSTTATPSPPYQPTPISVPKPVTRSQHGIFKPKRQLNLNTSVPRSPLPRNPVSA 530
+P P + + T PP+ PTP + P P+++ + PK N P P P N S
Sbjct: 313 YTPTPPKTPSPTSQPPHTPTPPNTPSPISQPPYTPTPPKTPSPTN-QPPHIPSPPNSSSP 489
Query: 531 LRDP 534
P
Sbjct: 490 TSQP 501
Score = 53.1 bits (126), Expect = 2e-07
Identities = 29/99 (29%), Positives = 44/99 (44%)
Frame = +1
Query: 436 SQPSLGQPAQHDLPNTQPTTQPTTPEEQHAHSPPSSSPNPSPSTTATPSPPYQPTPISVP 495
S P++ P + PN P PT P+ S P P P + + PP+ PTP S P
Sbjct: 112 SPPNVPSPPKAPSPNNHPPYTPTPPKTPSPTSQPPYIPLPPKTPSPISQPPHVPTPPSTP 291
Query: 496 KPVTRSQHGIFKPKRQLNLNTSVPRSPLPRNPVSALRDP 534
P+++ + PK + + P +P P N S + P
Sbjct: 292 SPISQPPYTPTPPKTP-SPTSQPPHTPTPPNTPSPISQP 405
Score = 52.4 bits (124), Expect = 4e-07
Identities = 32/111 (28%), Positives = 46/111 (40%), Gaps = 1/111 (0%)
Frame = +1
Query: 426 PSPYVIHHLTSQPSLGQPAQHDLPNTQPTTQPTTPEEQHAHSPPSSSPNPSPSTTATPSP 485
PSP ++ P + P P +QP PT P+ S P +P P + + P
Sbjct: 241 PSP-----ISQPPHVPTPPSTPSPISQPPYTPTPPKTPSPTSQPPHTPTPPNTPSPISQP 405
Query: 486 PYQPTPISVPKPVTRSQHGIFKPKRQLNLNTSVPRSPL-PRNPVSALRDPN 535
PY PTP P P + H I P + + P +P P+ P + PN
Sbjct: 406 PYTPTPPKTPSPTNQPPH-IPSPPNSSSPTSQPPNTPSPPKTPSPTSQPPN 555
Score = 48.5 bits (114), Expect = 5e-06
Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Frame = +1
Query: 426 PSPYVIHHLTSQPSLGQPAQHDLPNTQPTTQPTTPEEQHAHSPPSSSPN-PSPSTTATPS 484
PSP + + PS+ P + P QP P TP SP S PN PSP +P+
Sbjct: 1 PSP-----VYTPPSIPTPPKTPSPGNQP---PHTPIPPKTPSPSYSPPNVPSPPKAPSPN 156
Query: 485 --PPYQPTPISVPKPVTRSQHGIFKPK--RQLNLNTSVPRSPLPRNPVS 529
PPY PTP P P ++ + PK ++ VP P +P+S
Sbjct: 157 NHPPYTPTPPKTPSPTSQPPYIPLPPKTPSPISQPPHVPTPPSTPSPIS 303
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,603,031
Number of Sequences: 28460
Number of extensions: 397730
Number of successful extensions: 8090
Number of sequences better than 10.0: 850
Number of HSP's better than 10.0 without gapping: 4460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6087
length of query: 1038
length of database: 4,897,600
effective HSP length: 100
effective length of query: 938
effective length of database: 2,051,600
effective search space: 1924400800
effective search space used: 1924400800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Medicago: description of AC146632.4