TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146631.2 + phase: 0 /pseudo
         (953 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AU089582                                                               56  2e-08
TC7974 similar to GB|AAA77675.1|607870|DSU11801 period protein {...    31  1.1
BF177840                                                               28  6.8

>AU089582 
          Length = 383

 Score = 55.8 bits (133), Expect(2) = 2e-08
 Identities = 27/69 (39%), Positives = 39/69 (56%)
 Frame = +1

Query: 647 DLYS*YCEVAWSSVEYCVGKRPEVHFKILEEFARCIGFKVEVEFGLSSANRWSVGENDSI 706
           DL  * C +AW +  Y    R  +H   LE F+ C G  ++ E+  SS+N WSV E+ S 
Sbjct: 28  DLLG*DCFLAWCTCVYNFRSRSSIHITFLEVFSNCFGNSIKNEYRFSSSN*WSVREDYSD 207

Query: 707 VRGFAKRMC 715
           +RG+A  +C
Sbjct: 208 LRGYASCLC 234



 Score = 20.4 bits (41), Expect(2) = 2e-08
 Identities = 8/18 (44%), Positives = 13/18 (71%)
 Frame = +2

Query: 744 GTVQSFVWSEVEDSFMLV 761
           GT+ S VW E++ ++ LV
Sbjct: 320 GTI*SLVW*EMQVTYRLV 373


>TC7974 similar to GB|AAA77675.1|607870|DSU11801 period protein {Drosophila
           simulans;} , partial (46%)
          Length = 689

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 15/36 (41%), Positives = 22/36 (60%)
 Frame = -3

Query: 138 MNIR*CLSVILMRLLCLWSI*TEFSMLIWINLWLCL 173
           +N+  CL + L + LCL+  *  F   +W+ LWLCL
Sbjct: 99  LNLYQCLCLCLFQCLCLFLC*FLF---LWVCLWLCL 1


>BF177840 
          Length = 410

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 15/39 (38%), Positives = 20/39 (50%)
 Frame = +1

Query: 661 EYCVGKRPEVHFKILEEFARCIGFKVEVEFGLSSANRWS 699
           E+ VG   ++H   LE      G KV V + LSS N W+
Sbjct: 13  EHSVGSGHQIHKPFLENIMG*GGNKVVVLYNLSSTNGWA 129


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.373    0.168    0.680 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,546,860
Number of Sequences: 28460
Number of extensions: 287397
Number of successful extensions: 3529
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1868
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 1599
Number of HSP's gapped (non-prelim): 2070
length of query: 953
length of database: 4,897,600
effective HSP length: 99
effective length of query: 854
effective length of database: 2,080,060
effective search space: 1776371240
effective search space used: 1776371240
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (22.0 bits)
S2: 60 (27.7 bits)