BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146588.6 - phase: 0 /pseudo
(670 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19998 similar to UP|RED_HUMAN (Q13123) Red protein (RER protei... 39 0.003
AV419050 36 0.018
TC10249 similar to UP|Q84LL9 (Q84LL9) Salt tolerance protein 3, ... 36 0.018
BI420757 34 0.067
BP067368 34 0.067
BP063315 34 0.087
BU494286 33 0.15
AU088817 33 0.15
AV765315 33 0.15
TC19053 similar to UP|Q9FHH9 (Q9FHH9) DNA-binding protein-like, ... 33 0.19
TC15001 similar to UP|GLE1_YEAST (Q12315) RNA export factor GLE1... 32 0.33
AV780303 31 0.74
BP055634 30 1.3
TC13300 similar to GB|AAP13387.1|30023708|BT006279 At3g52220 {Ar... 30 1.3
TC7849 similar to GB|AAN18126.1|23308313|BT000557 At2g10940/F15K... 30 1.3
BP033642 30 1.6
TC12137 similar to UP|Q8L7W3 (Q8L7W3) At2g29210/F16P2.41, partia... 29 2.1
AV779495 29 2.1
TC18339 weakly similar to GB|AAF21246.1|6648604|AF048705 ubiquit... 29 2.1
CB829501 29 2.1
>TC19998 similar to UP|RED_HUMAN (Q13123) Red protein (RER protein) (IK
factor) (Cytokine IK), partial (6%)
Length = 492
Score = 38.9 bits (89), Expect = 0.003
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 213 DPELDRGVMRTDKEQRRREREKDRREERDRRERERDDRDYDND-GNLERLPHKKK 266
D + DR R +R RER++DR ER RERERD+ + + LE+L +++
Sbjct: 328 DRDRDRDRDRDRDRERDRERDRDRDRERRNRERERDEENKARERARLEKLAERER 492
Score = 34.3 bits (77), Expect = 0.067
Identities = 19/60 (31%), Positives = 33/60 (54%), Gaps = 1/60 (1%)
Frame = +1
Query: 226 EQRRREREKDRREERDRRERERD-DRDYDNDGNLERLPHKKKSVHRATDPGTAEPLHDAD 284
+ RR+R++DR +RD R+RERD +RD D D ++ ++A + E L + +
Sbjct: 313 DPNRRDRDRDRDRDRD-RDRERDRERDRDRDRERRNRERERDEENKARERARLEKLAERE 489
Score = 30.0 bits (66), Expect = 1.3
Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 1/49 (2%)
Frame = +1
Query: 224 DKEQRRREREKDRREERDRRERERD-DRDYDNDGNLERLPHKKKSVHRA 271
++ R R+R++DR +R+ R+RERD DRD + + K+ RA
Sbjct: 319 NRRDRDRDRDRDRDRDRE-RDRERDRDRDRERRNRERERDEENKARERA 462
Score = 29.3 bits (64), Expect = 2.1
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 401 EKDRDRGRD-DGVKERDRELRERDKSTGISNKD 432
++DRDR RD D +ERDRE R+RD+ N++
Sbjct: 328 DRDRDRDRDRDRDRERDRE-RDRDRDRERRNRE 423
>AV419050
Length = 409
Score = 36.2 bits (82), Expect = 0.018
Identities = 17/46 (36%), Positives = 27/46 (57%)
Frame = +1
Query: 230 REREKDRREERDRRERERDDRDYDNDGNLERLPHKKKSVHRATDPG 275
R+R++DR R++ ER+R DRD D D + + +S R+ D G
Sbjct: 13 RDRDRDRERRREKEERDRGDRDRDRDRTRSK---RSRSRSRSIDHG 141
Score = 28.9 bits (63), Expect = 2.8
Identities = 11/26 (42%), Positives = 18/26 (68%)
Frame = +1
Query: 223 TDKEQRRREREKDRREERDRRERERD 248
TD+++ R + +EERDR +R+RD
Sbjct: 7 TDRDRDRDRERRREKEERDRGDRDRD 84
Score = 27.3 bits (59), Expect = 8.2
Identities = 19/77 (24%), Positives = 31/77 (39%), Gaps = 12/77 (15%)
Frame = +1
Query: 224 DKEQRRREREKDRREERDRRERERDDRDYDNDGNLE---------RLPHK---KKSVHRA 271
D+E+RR + E+DR + R+R R R +++ R P + ++ HR
Sbjct: 28 DRERRREKEERDRGDRDRDRDRTRSKRSRSRSRSIDHGRSRHARSRSPSERSHRRRHHRT 207
Query: 272 TDPGTAEPLHDADEKLD 288
P H D D
Sbjct: 208 PSPDQPRKRHRRDSVED 258
>TC10249 similar to UP|Q84LL9 (Q84LL9) Salt tolerance protein 3, partial
(35%)
Length = 1096
Score = 36.2 bits (82), Expect = 0.018
Identities = 26/90 (28%), Positives = 38/90 (41%), Gaps = 9/90 (10%)
Frame = +1
Query: 176 LLRDRSSAMTTGRQMHVDKREKTTTLHADRDLSVDHPDPELDRGVMRTDKEQRRREREKD 235
++RD S T ++ +++ A+ + E R R D R + R+KD
Sbjct: 103 MVRDFISEFQTAKEKAIEEERLAREREAEERRKRKEQEYERKR---RGDSSDREKHRDKD 273
Query: 236 RREERDR---------RERERDDRDYDNDG 256
R ERDR R RERD R Y + G
Sbjct: 274 RDRERDRYRDRDSDRERSRERDVRGYRDGG 363
Score = 29.6 bits (65), Expect = 1.6
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = +1
Query: 226 EQRRR----EREKDRREERDRRERERDDRDYDNDGNLER 260
E++RR +REK R ++RDR DRD D + + ER
Sbjct: 220 ERKRRGDSSDREKHRDKDRDRERDRYRDRDSDRERSRER 336
>BI420757
Length = 528
Score = 34.3 bits (77), Expect = 0.067
Identities = 16/45 (35%), Positives = 27/45 (59%), Gaps = 4/45 (8%)
Frame = +3
Query: 220 VMRTDKEQRRREREKDRREERD----RRERERDDRDYDNDGNLER 260
V +KE+ RERE++R ERD R+R+ ++ + + +G ER
Sbjct: 24 VFPREKERENRERERERERERDLVVRERKRDEEEEEAEAEGTRER 158
>BP067368
Length = 322
Score = 34.3 bits (77), Expect = 0.067
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = -2
Query: 194 KREKTTTLHADRDLSVDHPDPELDRGVMRTDKEQRRREREKDR-----REERDR-RERER 247
+RE++ +DR DH + R RT R RERE+DR + DR RERER
Sbjct: 186 ERERSRERSSDRARDRDHREDRHHRDRDRTRDRDRDRERERDRDVTEIEDVTDRGRERER 7
Query: 248 D 248
D
Sbjct: 6 D 4
Score = 33.1 bits (74), Expect = 0.15
Identities = 26/82 (31%), Positives = 35/82 (41%)
Frame = -2
Query: 192 VDKREKTTTLHADRDLSVDHPDPELDRGVMRTDKEQRRREREKDRREERDRRERERDDRD 251
V++R H + P DR V R D+E + RER KD+ ER+R DR
Sbjct: 321 VNQRHSGREQHKSAPSRSEEPRVREDRNVDR-DRE-KSRERVKDKDGERERSRERSSDRA 148
Query: 252 YDNDGNLERLPHKKKSVHRATD 273
D D H++ HR D
Sbjct: 147 RDRD-------HREDRHHRDRD 103
Score = 32.3 bits (72), Expect = 0.25
Identities = 23/71 (32%), Positives = 32/71 (44%), Gaps = 2/71 (2%)
Frame = -2
Query: 180 RSSAMTTGRQMHVDK-REKTTTLHADRDLSVDHPDPELDRGVMRTDKEQRRREREKDRRE 238
RS +VD+ REK+ D+D + D + R R++DR
Sbjct: 273 RSEEPRVREDRNVDRDREKSRERVKDKDGERERSRERSSDRARDRDHREDRHHRDRDRTR 94
Query: 239 ERDR-RERERD 248
+RDR RERERD
Sbjct: 93 DRDRDRERERD 61
Score = 30.4 bits (67), Expect = 0.96
Identities = 25/84 (29%), Positives = 40/84 (46%), Gaps = 14/84 (16%)
Frame = -2
Query: 186 TGRQMH--VDKREKTTTLHADRDLSVDHP---------DPELDRGVMRTDKEQRRREREK 234
+GR+ H R + + DR++ D D E +R R+ R R+ +
Sbjct: 306 SGREQHKSAPSRSEEPRVREDRNVDRDREKSRERVKDKDGERERSRERSSDRARDRDHRE 127
Query: 235 DRR-EERDR-RERERD-DRDYDND 255
DR +RDR R+R+RD +R+ D D
Sbjct: 126 DRHHRDRDRTRDRDRDRERERDRD 55
>BP063315
Length = 440
Score = 33.9 bits (76), Expect = 0.087
Identities = 12/28 (42%), Positives = 21/28 (74%)
Frame = +3
Query: 228 RRREREKDRREERDRRERERDDRDYDND 255
RRRERE++R ER+ E ER++++ + +
Sbjct: 3 RRREREREREREREEEEEEREEKNLETE 86
Score = 32.0 bits (71), Expect = 0.33
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 226 EQRRREREKDRREERDRRERERDDRD 251
++R RERE++R+ R RRER RD
Sbjct: 5 QKRERERERERKRRRRRRERREKPRD 82
>BU494286
Length = 198
Score = 33.1 bits (74), Expect = 0.15
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +3
Query: 230 REREKDRREERDRRERERDDRDYDNDGNLERLPHKKKSVHRATDPG 275
R EKD +R+ RERER DRD D R + +S R G
Sbjct: 6 RHEEKDYGRDREGRERERRDRDRDRGRRRSRSRSRSRSRDRKEHDG 143
Score = 29.3 bits (64), Expect = 2.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 202 HADRDLSVDHPDPELDRGVMRTDKEQRRREREKDRREERDRRERERDD 249
H ++D D E +R D+ RRR R + R RDR+E + D
Sbjct: 9 HEEKDYGRDREGRERERRDRDRDRG-RRRSRSRSRSRSRDRKEHDGGD 149
>AU088817
Length = 191
Score = 33.1 bits (74), Expect = 0.15
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +1
Query: 215 ELDRGVMRTDKEQRRREREKDRREERDR-RERERD 248
E +R R + +R RERE++R ER+R RERER+
Sbjct: 22 ERERERERERERERERERERERERERERXRERERE 126
>AV765315
Length = 510
Score = 33.1 bits (74), Expect = 0.15
Identities = 26/77 (33%), Positives = 35/77 (44%), Gaps = 6/77 (7%)
Frame = -1
Query: 213 DPELDRGVMRTDKEQRRREREKDRREERD------RRERERDDRDYDNDGNLERLPHKKK 266
+ E +R ++ QR RE + RR ERD RR R D DY +D + E
Sbjct: 456 EAEKERKAREEEEAQRAREEGEKRRRERDHKYGDRRRRRRPDPHDYMDDYHDE-----L* 292
Query: 267 SVHRATDPGTAEPLHDA 283
+VHRA G A L +
Sbjct: 291 NVHRAGSWGAAS*LQQS 241
>TC19053 similar to UP|Q9FHH9 (Q9FHH9) DNA-binding protein-like, partial
(3%)
Length = 603
Score = 32.7 bits (73), Expect = 0.19
Identities = 17/58 (29%), Positives = 28/58 (47%)
Frame = +1
Query: 207 LSVDHPDPELDRGVMRTDKEQRRREREKDRREERDRRERERDDRDYDNDGNLERLPHK 264
++V P P + R K RR+RE +RR ERD + R+ + G++ + K
Sbjct: 31 MNVPPPPPVMSREEFEARKADLRRKRENERRGERDFSQEREFGREASSVGDVSSMKPK 204
>TC15001 similar to UP|GLE1_YEAST (Q12315) RNA export factor GLE1, partial
(4%)
Length = 988
Score = 32.0 bits (71), Expect = 0.33
Identities = 22/86 (25%), Positives = 40/86 (45%)
Frame = +2
Query: 176 LLRDRSSAMTTGRQMHVDKREKTTTLHADRDLSVDHPDPELDRGVMRTDKEQRRREREKD 235
L +++ +A+ R+ K E+ D D ++ +++ R EQ+RRE E+
Sbjct: 530 LEKEKEAALIEARE----KEEQARKEKEDLDRMLEENRKKIEEAQRREALEQQRREEERY 697
Query: 236 RREERDRRERERDDRDYDNDGNLERL 261
R E +R++E R + ERL
Sbjct: 698 RELEEIQRQKEEAMRRKKQEEEQERL 775
>AV780303
Length = 562
Score = 30.8 bits (68), Expect = 0.74
Identities = 19/64 (29%), Positives = 31/64 (47%), Gaps = 2/64 (3%)
Frame = +3
Query: 224 DKEQRRREREKDRREERDRRERERDDRDYDNDGNLERLPHKKKSVHRATDPGT--AEPLH 281
D+++ +DR R R+R+RD D + +R K+K R T GT A+ H
Sbjct: 3 DRDRDSVRSSRDRDGGRSSRDRDRDGERSSRDRDRDRGREKEKERDRETRYGTRRAQVTH 182
Query: 282 DADE 285
+ D+
Sbjct: 183 EKDD 194
Score = 29.3 bits (64), Expect = 2.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 217 DRGVMRTDKEQRRREREKDRREERDRRERERDDR 250
DR + R D+E+ R + + ER+R ERER R
Sbjct: 197 DREMGRRDREKTGRGTTRRQEREREREERERSRR 298
>BP055634
Length = 561
Score = 30.0 bits (66), Expect = 1.3
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -1
Query: 218 RGVMRTDKEQRRREREKDRREERDRRERE 246
RG T++EQ R ERE+ + E+D RE E
Sbjct: 84 RGTRATEREQER-ERERSEKREKDEREGE 1
>TC13300 similar to GB|AAP13387.1|30023708|BT006279 At3g52220 {Arabidopsis
thaliana;}, partial (13%)
Length = 488
Score = 30.0 bits (66), Expect = 1.3
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +2
Query: 210 DHPDPELDRGVMRTDKEQRRREREKDRREERDRRERERDDRDYDNDGNLERLPHKKKSVH 269
D + E R KE +R REK R R+ R+ E+ ++ + D + + P K K
Sbjct: 20 DASEDESRRKRSEERKEDKRERREK--RHSREDRKHEKREKRHSRDSDDRKRPQKDKKRR 193
Query: 270 RATD 273
+D
Sbjct: 194 HDSD 205
>TC7849 similar to GB|AAN18126.1|23308313|BT000557 At2g10940/F15K19.1
{Arabidopsis thaliana;}, partial (55%)
Length = 1157
Score = 30.0 bits (66), Expect = 1.3
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -2
Query: 202 HADRDLSVDHPDPELDRGVMRTDKEQRRREREKDRREERD 241
HA+ ++S+D G +KE+R RERE++R ERD
Sbjct: 124 HAEEEVSMDL*GLHA-YGFSLCEKERRERERERERERERD 8
>BP033642
Length = 448
Score = 29.6 bits (65), Expect = 1.6
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +3
Query: 392 HGQKPLKVEEKDRDRGRDDGVKERDRELRERDKSTGISNKDVSIPKVSLSKDKT 445
HG+ P+ E RDRGR + RD + R+RD+ T + K S++K+
Sbjct: 195 HGRSPVHSERSPRDRGR--YYEHRDYDHRDRDR-TPVRRSPCGRDKSPYSREKS 347
>TC12137 similar to UP|Q8L7W3 (Q8L7W3) At2g29210/F16P2.41, partial (9%)
Length = 579
Score = 29.3 bits (64), Expect = 2.1
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +3
Query: 221 MRTDKEQRRREREKDRREERDRRE-RERDDRDY-DNDGNLERL-PHKKKSVHRATDPGTA 277
+R ++++RRRE + RREER + + + DY +D ER+ H + DP
Sbjct: 87 LRKEEKRRRREERRHRREERRAEKLKLKSKTDYISDDEEAERMDDHPSNNEETQVDPKKL 266
Query: 278 E 278
E
Sbjct: 267 E 269
>AV779495
Length = 480
Score = 29.3 bits (64), Expect = 2.1
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Frame = -3
Query: 213 DPELDRGVMRTDKEQRRREREKDRREERDR---RERERDD---RDYDNDGNLERLPHKKK 266
D E++ G R +R RERE +RDR RER RD R+ D +ER + ++
Sbjct: 457 DIEIEMGRDRERDREREREREIHTERQRDRERDRERARDIWI*RERYIDRLIERYIYTER 278
Query: 267 SVH 269
+++
Sbjct: 277 AIY 269
>TC18339 weakly similar to GB|AAF21246.1|6648604|AF048705 ubiquitin-specific
protease {Arabidopsis thaliana;}, partial (12%)
Length = 500
Score = 29.3 bits (64), Expect = 2.1
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +1
Query: 228 RRREREKDRREERDRRERER 247
RRRERE++R ER+ RERER
Sbjct: 76 RRRERERERERERE-RERER 132
Score = 27.7 bits (60), Expect = 6.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 231 EREKDRREERDRRERERDDRDYD 253
ERE++R ER+R DDR D
Sbjct: 83 ERERERERERERERGREDDRGVD 151
>CB829501
Length = 440
Score = 29.3 bits (64), Expect = 2.1
Identities = 15/26 (57%), Positives = 17/26 (64%), Gaps = 1/26 (3%)
Frame = +3
Query: 222 RTDKEQRRRER-EKDRREERDRRERE 246
RT+ +RRRER RRE DRR RE
Sbjct: 48 RTESHRRRRERIGSQRRERADRRRRE 125
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.137 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,592,742
Number of Sequences: 28460
Number of extensions: 119741
Number of successful extensions: 973
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of query: 670
length of database: 4,897,600
effective HSP length: 96
effective length of query: 574
effective length of database: 2,165,440
effective search space: 1242962560
effective search space used: 1242962560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146588.6