TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146588.13 - phase: 0 
         (107 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17356                                                               181  1e-47
CB827531                                                              180  4e-47
BP066992                                                               26  0.89
TC13024                                                                26  1.2
TC14285 similar to UP|Q9AXU5 (Q9AXU5) Pathogen-inducible alpha-d...    26  1.2
TC13042                                                                26  1.2
TC15800 homologue to GB|AAM19932.1|20453387|AY097416 AT4g17800/d...    26  1.2
AV773177                                                               25  2.6
TC13129 similar to UP|RIR2_TOBAC (P49730) Ribonucleoside-diphosp...    25  2.6
AV767121                                                               24  3.4
TC12530 similar to GB|AAB68983.1|500656|YSCH9666 Yhr143wp {Sacch...    24  3.4
TC8112 similar to UP|ODPA_PEA (P52902) Pyruvate dehydrogenase E1...    24  3.4
TC18765 weakly similar to UP|Q9LVT1 (Q9LVT1) Disease resistance ...    24  4.4
TC8721                                                                 23  7.5
TC8030                                                                 23  9.8
TC8526                                                                 23  9.8
AV415475                                                               23  9.8
BP062821                                                               23  9.8
BP073666                                                               23  9.8
TC14810 similar to GB|AAL60196.1|18139887|AF441079 O-linked N-ac...    23  9.8

>TC17356 
          Length = 589

 Score =  181 bits (460), Expect = 1e-47
 Identities = 90/112 (80%), Positives = 94/112 (83%), Gaps = 6/112 (5%)
 Frame = +1

Query: 1   MPSGMLGTLLSQIDAVPLFSDTAWGHKVNLDFLNKHMGAT---RSQPWRATTDPADVHSG 57
           MPSGMLGTLLS +D +PLFS+TAWG   NLDFL KHMGAT   RSQPWRA  DPADVHSG
Sbjct: 13  MPSGMLGTLLSLVDVLPLFSNTAWGQNANLDFLKKHMGATFEKRSQPWRANIDPADVHSG 192

Query: 58  DFLAVSKICGRWGGFETLEKLVT---ADHAAVCLKDEMGSLWVGESGHENEK 106
           DFLAVSKI GRWGGFETLEK VT   A H AVCLKDEMG+LWVGESGHENEK
Sbjct: 193 DFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDEMGNLWVGESGHENEK 348


>CB827531 
          Length = 545

 Score =  180 bits (456), Expect = 4e-47
 Identities = 89/112 (79%), Positives = 95/112 (84%), Gaps = 6/112 (5%)
 Frame = +2

Query: 1   MPSGMLGTLLSQIDAVPLFSDTAWGHKVNLDFLNKHMGAT---RSQPWRATTDPADVHSG 57
           MPSGMLGTLLS ID +PLF++ AWG K NLDFL KHMGAT   RSQPWRAT DPADVHSG
Sbjct: 26  MPSGMLGTLLSLIDVLPLFANNAWGQKANLDFLKKHMGATFEKRSQPWRATIDPADVHSG 205

Query: 58  DFLAVSKICGRWGGFETLEKLVT---ADHAAVCLKDEMGSLWVGESGHENEK 106
           DFLAVSKI GRWGGFETLEK VT   A H AVCLKD+MG+LWVGESGHENE+
Sbjct: 206 DFLAVSKIRGRWGGFETLEKWVTGSFAGHTAVCLKDDMGNLWVGESGHENEE 361


>BP066992 
          Length = 525

 Score = 26.2 bits (56), Expect = 0.89
 Identities = 13/36 (36%), Positives = 18/36 (49%)
 Frame = +1

Query: 62  VSKICGRWGGFETLEKLVTADHAAVCLKDEMGSLWV 97
           V  IC +W GF T+      ++A   LK    SLW+
Sbjct: 193 VCNICYKWLGFHTVLSFDLINYAEEHLKTST*SLWL 300


>TC13024 
          Length = 665

 Score = 25.8 bits (55), Expect = 1.2
 Identities = 14/26 (53%), Positives = 16/26 (60%), Gaps = 4/26 (15%)
 Frame = +3

Query: 57  GDFLAVSKICGRW----GGFETLEKL 78
           GDFLAVS IC  W    GG+  L K+
Sbjct: 273 GDFLAVSIICLVWR*PLGGWRYLSKI 350


>TC14285 similar to UP|Q9AXU5 (Q9AXU5) Pathogen-inducible alpha-dioxygenase,
           partial (97%)
          Length = 2266

 Score = 25.8 bits (55), Expect = 1.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 54  VHSGDFLAVS-KICGRWGGFETLEKLVTADHAAVC 87
           +H+ +  A+S  I   W G  TL+ L   +H AVC
Sbjct: 802 LHNENGTAISGDIRNSWAGVSTLQALFIQEHNAVC 906


>TC13042 
          Length = 580

 Score = 25.8 bits (55), Expect = 1.2
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
 Frame = +3

Query: 42  SQPWRATTDPADVHSGDFLAVSKIC------GRWGGFETLEKLVTADH 83
           ++ W AT  P ++ SGD   +S+          W G  TL+    A H
Sbjct: 363 NESWSATPPPQELESGDKFGISRCL*IHSFP*GWFGAATLDLWTAASH 506


>TC15800 homologue to GB|AAM19932.1|20453387|AY097416 AT4g17800/dl4935c
           {Arabidopsis thaliana;}, partial (39%)
          Length = 818

 Score = 25.8 bits (55), Expect = 1.2
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -1

Query: 44  PWRATTDPAD 53
           PWR TTDPAD
Sbjct: 737 PWRETTDPAD 708


>AV773177 
          Length = 412

 Score = 24.6 bits (52), Expect = 2.6
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -1

Query: 57  GDFLAVSKICGRWGG 71
           GDFLAVS IC  W G
Sbjct: 259 GDFLAVSIICLVWRG 215


>TC13129 similar to UP|RIR2_TOBAC (P49730) Ribonucleoside-diphosphate
           reductase small chain  (Ribonucleotide reductase) (R2
           subunit) , partial (46%)
          Length = 482

 Score = 24.6 bits (52), Expect = 2.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 46  RATTDPADVHSGDFLAVSKICGRWGG 71
           R+T+      +  FL +S+ICG W G
Sbjct: 165 RSTSSAVQNDASAFLYISQICGYWIG 88


>AV767121 
          Length = 525

 Score = 24.3 bits (51), Expect = 3.4
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
 Frame = +2

Query: 60  LAVSKICGR------WGGFETLEKLVTADHAAVCLKDEMGSLWV 97
           + V K C R      WGG E   K+       VC   E+G L +
Sbjct: 110 IGVGKSCVRLMRNFLWGGSENENKIA*VKWTDVCKPKELGGLGI 241


>TC12530 similar to GB|AAB68983.1|500656|YSCH9666 Yhr143wp {Saccharomyces
           cerevisiae;} , partial (5%)
          Length = 464

 Score = 24.3 bits (51), Expect = 3.4
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
 Frame = -3

Query: 39  ATRSQPWRATTDPA---DVHSGDFLAVSKICGR--WGGFETLEKLVTADHAAVCLK 89
           ATRS+ WR   DP+     H     +  +  GR  WGG    E      H + CL+
Sbjct: 399 ATRSRTWRCKLDPSAPRSDHHRQLRSP*RPSGRDPWGGHSCGEPRRWWSHWSWCLQ 232


>TC8112 similar to UP|ODPA_PEA (P52902) Pyruvate dehydrogenase E1 component
           alpha subunit, mitochondrial precursor  (PDHE1-A) ,
           partial (90%)
          Length = 1816

 Score = 24.3 bits (51), Expect = 3.4
 Identities = 12/34 (35%), Positives = 17/34 (49%)
 Frame = +3

Query: 34  NKHMGATRSQPWRATTDPADVHSGDFLAVSKICG 67
           N H G   ++ WRA   PA    GD++   K+ G
Sbjct: 816 NNHYGMGTAE-WRAAKSPAYYKRGDYVPGLKVDG 914


>TC18765 weakly similar to UP|Q9LVT1 (Q9LVT1) Disease resistance
           protein-like, partial (18%)
          Length = 688

 Score = 23.9 bits (50), Expect = 4.4
 Identities = 11/19 (57%), Positives = 14/19 (72%)
 Frame = +2

Query: 9   LLSQIDAVPLFSDTAWGHK 27
           LLS+ DA+ LF   A+GHK
Sbjct: 347 LLSEGDALSLFCHHAFGHK 403


>TC8721 
          Length = 670

 Score = 23.1 bits (48), Expect = 7.5
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = +2

Query: 13 IDAVPLFSDTAWGHKVNLDFLNKHMGATRSQPW 45
          ID +P   +  + ++++    +KH    R +PW
Sbjct: 53 IDMIPKTKEELFSYEIDWTVYDKHQLHERMRPW 151


>TC8030 
          Length = 991

 Score = 22.7 bits (47), Expect = 9.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 59  FLAVSKICGRWGG 71
           F  + ++CG WGG
Sbjct: 339 FFLIFRVCGGWGG 301


>TC8526 
          Length = 698

 Score = 22.7 bits (47), Expect = 9.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 90  DEMGSLWVGESGHENEKV 107
           DE  S W GE  H N+ V
Sbjct: 162 DEHPSQWTGEVSHANQAV 109


>AV415475 
          Length = 427

 Score = 22.7 bits (47), Expect = 9.8
 Identities = 10/15 (66%), Positives = 11/15 (72%)
 Frame = -2

Query: 35  KHMGATRSQPWRATT 49
           KH+ AT SQPWR  T
Sbjct: 240 KHL-ATASQPWREAT 199


>BP062821 
          Length = 454

 Score = 22.7 bits (47), Expect = 9.8
 Identities = 8/23 (34%), Positives = 9/23 (38%)
 Frame = +2

Query: 43  QPWRATTDPADVHSGDFLAVSKI 65
           QPW    +P D H G       I
Sbjct: 194 QPWAGPLEPCDPHHGPVFVTHNI 262


>BP073666 
          Length = 348

 Score = 22.7 bits (47), Expect = 9.8
 Identities = 13/36 (36%), Positives = 18/36 (49%), Gaps = 1/36 (2%)
 Frame = +1

Query: 42  SQPWRATTDP-ADVHSGDFLAVSKICGRWGGFETLE 76
           S  ++  T P A  H   +  VSK  GRWG  + +E
Sbjct: 82  SSLYQQITQPRATGHKATWGGVSKSSGRWGRGQVVE 189


>TC14810 similar to GB|AAL60196.1|18139887|AF441079 O-linked N-acetyl
           glucosamine transferase {Arabidopsis thaliana;} ,
           partial (10%)
          Length = 580

 Score = 22.7 bits (47), Expect = 9.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -1

Query: 55  HSGDFLAVSKICGRW 69
           HS  F    K CGRW
Sbjct: 289 HSTSFSVTLKCCGRW 245


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.134    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,015,653
Number of Sequences: 28460
Number of extensions: 23740
Number of successful extensions: 126
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of query: 107
length of database: 4,897,600
effective HSP length: 83
effective length of query: 24
effective length of database: 2,535,420
effective search space: 60850080
effective search space used: 60850080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)