TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146588.1 - phase: 0 /pseudo
         (191 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV410603                                                               42  7e-05
BP043612                                                               27  2.9
TC13432 weakly similar to UP|Q8LPX2 (Q8LPX2) 36I5.7, partial (19%)     27  2.9
TC17530 similar to UP|Q8L6A7 (Q8L6A7) Carboxypeptidase type III,...    25  6.6
TC17789 similar to PIR|T05768|T05768 subtilisin-like proteinase ...    25  6.6
BG662087                                                               25  6.6

>AV410603 
          Length = 162

 Score = 42.0 bits (97), Expect = 7e-05
 Identities = 20/40 (50%), Positives = 26/40 (65%)
 Frame = +1

Query: 2  IDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRT 41
          +D+L+D L G+   SK++ RS YH I  K ED  KT FRT
Sbjct: 34 VDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRT 153


>BP043612 
          Length = 472

 Score = 26.6 bits (57), Expect = 2.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 135 RRFIKESLQIALLVTRLTRKGQHMCGIGNAKKIFKSLKRS 174
           ++ I +SLQ+A+ V+    K   M G  +  ++  + KRS
Sbjct: 293 KKIIFQSLQVAIQVSTYDHKLPEMTGCNSLNRVHSTFKRS 412


>TC13432 weakly similar to UP|Q8LPX2 (Q8LPX2) 36I5.7, partial (19%)
          Length = 569

 Score = 26.6 bits (57), Expect = 2.9
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -2

Query: 119 CNGRLPRWLR 128
           CNGRLP+W+R
Sbjct: 115 CNGRLPKWIR 86


>TC17530 similar to UP|Q8L6A7 (Q8L6A7) Carboxypeptidase type III, partial
           (20%)
          Length = 538

 Score = 25.4 bits (54), Expect = 6.6
 Identities = 10/29 (34%), Positives = 16/29 (54%)
 Frame = -2

Query: 143 QIALLVTRLTRKGQHMCGIGNAKKIFKSL 171
           +I L V R   K +H CG+G   ++  S+
Sbjct: 387 RILLAVARFKEKVEHPCGMGMLNRVIPSI 301


>TC17789 similar to PIR|T05768|T05768 subtilisin-like proteinase  -
           Arabidopsis                thaliana {Arabidopsis
           thaliana;} , partial (14%)
          Length = 940

 Score = 25.4 bits (54), Expect = 6.6
 Identities = 14/43 (32%), Positives = 22/43 (50%)
 Frame = -1

Query: 115 GCNVCNGRLPRWLRK*VEYHRRFIKESLQIALLVTRLTRKGQH 157
           G +VC+G   R  R+ +  HR+   +   I +L  RL R+  H
Sbjct: 436 GPHVCHGSYKRLRRQTLRPHRKHSHKRRVIQILRRRLPRRTTH 308


>BG662087 
          Length = 373

 Score = 25.4 bits (54), Expect = 6.6
 Identities = 15/40 (37%), Positives = 22/40 (54%)
 Frame = +1

Query: 2   IDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRT 41
           ID L+D  +   ++S ++  S YH I+    D  KTAF T
Sbjct: 91  IDKLVDGASDNELLSLMDAYSGYHQIKMHPSDEDKTAFMT 210


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.365    0.164    0.594 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,083,081
Number of Sequences: 28460
Number of extensions: 38586
Number of successful extensions: 375
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of query: 191
length of database: 4,897,600
effective HSP length: 85
effective length of query: 106
effective length of database: 2,478,500
effective search space: 262721000
effective search space used: 262721000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 53 (25.0 bits)