TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146587.10 + phase: 0 /pseudo
         (1157 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC16206                                                                81  5e-26
TC9542 homologue to UP|CAMT_MEDSA (Q40313) Caffeoyl-CoA O-methyl...    27  1.5
AV779148                                                               30  2.2
CN825659                                                               29  4.9
BP045833                                                               28  6.4

>TC16206 
          Length = 557

 Score = 81.3 bits (199), Expect(2) = 5e-26
 Identities = 40/44 (90%), Positives = 41/44 (92%)
 Frame = +2

Query: 1079 TIIYLLGQQLHFELFDFSYQILNIAEVEAASVVQTQKNSHFAVQ 1122
            TIIYLLGQQLHFELFDFSYQILNIAEVEAASVVQT KN+H  VQ
Sbjct: 2    TIIYLLGQQLHFELFDFSYQILNIAEVEAASVVQTHKNTHLPVQ 133



 Score = 54.7 bits (130), Expect(2) = 5e-26
 Identities = 28/35 (80%), Positives = 31/35 (88%)
 Frame = +1

Query: 1123 P*RKDSMRY*AKWCSITSYKI*KHSFSI*NSATER 1157
            P*RK+ + Y*AKWCS TSYKI* HSFSI*N+ATER
Sbjct: 217  P*RKNCLCY*AKWCSNTSYKI**HSFSI*NTATER 321


>TC9542 homologue to UP|CAMT_MEDSA (Q40313) Caffeoyl-CoA
           O-methyltransferase  (Trans-caffeoyl-CoA
           3-O-methyltransferase) (CCoAMT) (CCoAOMT) , complete
          Length = 1012

 Score = 26.6 bits (57), Expect(2) = 1.5
 Identities = 11/16 (68%), Positives = 12/16 (74%)
 Frame = +3

Query: 143 RRINGPTISHLWSMLK 158
           RRI GPTIS LW + K
Sbjct: 534 RRIMGPTISFLWMLTK 581



 Score = 22.3 bits (46), Expect(2) = 1.5
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +2

Query: 55  SEDTKALNQLSSLTQEGKEMASVLYTYRSCVKALPQLPDSMKQSQADLYLETYQV 109
           +++ + LN L  L      M   +YT  S +     +PD  K    D+  E Y++
Sbjct: 275 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALAIPDDGKILAMDVNKENYEL 439


>AV779148 
          Length = 537

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 16/37 (43%), Positives = 23/37 (61%), Gaps = 5/37 (13%)
 Frame = +2

Query: 53  SLSEDTKALNQLSSLTQEGKEMASVLY-----TYRSC 84
           +L  + KAL++L +L QE  + A VLY     T+RSC
Sbjct: 323 TLENENKALHELKNLIQECTQQARVLYPC*TTTHRSC 433


>CN825659 
          Length = 424

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 614 FLWFREFYLESSRVI--QFPIECSLPWMLVDCVLESPNSGLL 653
           FLW     LE  RV   +F IEC + + L DC +   +SG+L
Sbjct: 110 FLWTLLEQLERGRVFSWRFWIECGVVFQLRDCSVSRIHSGML 235


>BP045833 
          Length = 498

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 23/84 (27%), Positives = 37/84 (43%)
 Frame = +2

Query: 754 VLKHSHELLSIDLSVDSFSLMLNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTT 813
           V K  H +LS     DS  ++  E+ E+ + + +   L    W   Q+    +   CN +
Sbjct: 50  VEKMKHFILSSL*EKDSNKIVFREIGEHSTKL*YLVELKKTSWGCCQASGKVD*CQCNCS 229

Query: 814 QRFIRSSKTVPVQKPSIPSAKPSF 837
           + F+ SS    +   SIPSA   F
Sbjct: 230 ECFLFSSPRNGLNIISIPSASTKF 301


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.331    0.140    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,292,216
Number of Sequences: 28460
Number of extensions: 329604
Number of successful extensions: 1963
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1963
length of query: 1157
length of database: 4,897,600
effective HSP length: 100
effective length of query: 1057
effective length of database: 2,051,600
effective search space: 2168541200
effective search space used: 2168541200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.7 bits)