Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146585.9 - phase: 0 
         (724 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV777347                                                              169  2e-42
TC14969 similar to PIR|PQ0772|PQ0772 4-coumarate-CoA ligase  (cl...    73  1e-13
AV427444                                                               73  2e-13
TC7805 homologue to PIR|PQ0772|PQ0772 4-coumarate-CoA ligase  (c...    62  2e-10
TC19828 similar to UP|Q9FNT6 (Q9FNT6) Long chain acyl-CoA synthe...    55  5e-08
TC15125 weakly similar to UP|Q84P20 (Q84P20) Acyl-activating enz...    50  1e-06
TC17423 similar to PIR|H85064|H85064 4-coumarate-CoA ligase-like...    48  5e-06
AW719487                                                               44  7e-05
AV409031                                                               44  1e-04
TC18806 similar to UP|Q8S564 (Q8S564) 4-coumarate:coenzyme A lig...    42  3e-04
TC15126 similar to UP|Q84P19 (Q84P19) Acyl-activating enzyme 11,...    40  0.001
TC11662 similar to UP|O65748 (O65748) Acyl-CoA synthetase  (Frag...    40  0.001
TC16844 similar to UP|Q8LRT6 (Q8LRT6) Adenosine monophosphate bi...    39  0.002
AV772740                                                               39  0.003
TC10548 similar to UP|Q940V0 (Q940V0) T23O15.3/T23O15.3, partial...    38  0.007
BP043696                                                               38  0.007
TC12490 similar to UP|Q9FFE6 (Q9FFE6) AMP-binding protein (Adeno...    37  0.014
TC10376 similar to UP|Q8VZF1 (Q8VZF1) AT3g16910/K14A17_3 (Adenos...    35  0.032
BP053582                                                               32  0.039
BP063946                                                               34  0.094

>AV777347 
          Length = 558

 Score =  169 bits (427), Expect = 2e-42
 Identities = 87/105 (82%), Positives = 97/105 (91%)
 Frame = -3

Query: 620 IVVIGQDKRRLGAIIVPNSEEVLKVARELSIIDSISSNVVSEEKVLNLIYKELKTWMSES 679
           IVVIGQDKRRLGA+IVPN EEVLK ARELSIIDS SS+V S+EKV NLI+KELKTWMS S
Sbjct: 556 IVVIGQDKRRLGAVIVPNKEEVLKAARELSIIDSDSSDV-SQEKVTNLIHKELKTWMSGS 380

Query: 680 PFQIGPILLVNEPFTIDNGLMTPTMKIRRDRVVAKYKEQIDDLYK 724
            FQIGPILLVN+PFTIDNGL+TPTMKIRRDRVVA+Y+ QI++LYK
Sbjct: 379 TFQIGPILLVNDPFTIDNGLLTPTMKIRRDRVVAQYRNQIENLYK 245


>TC14969 similar to PIR|PQ0772|PQ0772 4-coumarate-CoA ligase  (clone
           GM4CL1B) -                soybean (fragment) {Glycine
           max;}  , partial (70%)
          Length = 928

 Score = 73.2 bits (178), Expect = 1e-13
 Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 10/122 (8%)
 Frame = +2

Query: 457 ISGGGSLPLEVDKFFEAIGVKVQN-----GYGLTETSPVIA-----ARRPRCNVIGSVGH 506
           +SG   L  E++   EA+  +V       GYG+TE  PV++     A++P     GS G 
Sbjct: 569 LSGAAPLGKELE---EALRSRVPQAVLGQGYGMTEAGPVLSMSLGFAKQPFPTKSGSCGT 739

Query: 507 PVQHTEFKVVDSETGEVLPPGSKGILKVRGPPVMNGYYKNPLATNQALDKDGWLNTGDLG 566
            V++ E KV+D ETG  L     G + +RG  +M GY  +  AT   +D +GWL+TGD+G
Sbjct: 740 VVRNAELKVLDPETGCSLGYNQPGEICIRGQQIMKGYLNDEKATATTIDAEGWLHTGDVG 919

Query: 567 WI 568
           +I
Sbjct: 920 YI 925



 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = +2

Query: 262 INSDDIATLIYTSGTTGNPKGVMLTHRNLLHQIKNLWD----TVPAEVGDRFLSMLPPWH 317
           IN +D   L ++SGTTG PKGV+LTH++L   +    D     +     D  L +LP +H
Sbjct: 185 INPEDAVALPFSSGTTGLPKGVVLTHKSLTTSVGQQVDGENPNLSLGTEDVLLCVLPLFH 364

Query: 318 AY 319
            +
Sbjct: 365 IF 370


>AV427444 
          Length = 428

 Score = 72.8 bits (177), Expect = 2e-13
 Identities = 42/117 (35%), Positives = 64/117 (53%), Gaps = 5/117 (4%)
 Frame = +1

Query: 457 ISGGGSLPLEVDKFFE-AIGVKVQNGYGLTETSPVIAARRPRCNVIGSVGHPVQHTEFKV 515
           +SG   L  ++ +F +   G +V  GYG+TET+ VI+       + G VG P    E K+
Sbjct: 25  VSGASPLSPDIMEFLKICFGGRVTEGYGMTETTCVISCIDQGDKLGGHVGSPSPACEVKL 204

Query: 516 VDSETGEVLP---PGSKGILKVRGPPVMNGYYKNPLATNQALDKDGWLNTGDLG-WI 568
           VD           P  +G + VRGP +  GYYK+   T + +D++GWL+TGD+G W+
Sbjct: 205 VDVPEMNYTSDDQPQPRGEICVRGPIIFKGYYKDEAQTREVIDEEGWLHTGDIGTWL 375


>TC7805 homologue to PIR|PQ0772|PQ0772 4-coumarate-CoA ligase  (clone
           GM4CL1B) -                soybean (fragment) {Glycine
           max;}  , partial (41%)
          Length = 965

 Score = 62.4 bits (150), Expect = 2e-10
 Identities = 42/127 (33%), Positives = 61/127 (47%)
 Frame = +3

Query: 509 QHTEFKVVDSETGEVLPPGSKGILKVRGPPVMNGYYKNPLATNQALDKDGWLNTGDLGWI 568
           ++ E KV+D ETG  L     G + +RG  +M GY  +  AT   +D +GWL+TGD+G+I
Sbjct: 90  RNAELKVLDPETGCSLGYNQPGEICIRGQQIMKGYLNDEKATATTIDAEGWLHTGDVGYI 269

Query: 569 APHHSTGRSRNSSGVIVVDGRAKDTIVLSTGENVEPAELEEAAMRSSIIQQIVVIGQDKR 628
                     +   + +VD R K+ I    G  V PAELE   +    I    V+ Q   
Sbjct: 270 ---------DDDDEIFIVD-RVKELIKFK-GFQVPPAELEGLLVSHPSIADAAVVPQKDA 416

Query: 629 RLGAIIV 635
             G + V
Sbjct: 417 AAGEVPV 437


>TC19828 similar to UP|Q9FNT6 (Q9FNT6) Long chain acyl-CoA synthetase  ,
           partial (17%)
          Length = 378

 Score = 54.7 bits (130), Expect = 5e-08
 Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
 Frame = +1

Query: 457 ISGGGSLPLEVDKFFE-AIGVKVQNGYGLTETSPVIAARRPRCNVIGSVGHPVQHTEFKV 515
           +SGG  L  +  +F    +G  +  GYGLTET             +G VG P+  +  K+
Sbjct: 16  LSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSDFDDTSVGRVGPPLPCSYIKL 195

Query: 516 VDSETGEVLP---PGSKGILKVRGPPVMNGYYKNPLATNQA--LDKDG--WLNTGDLG 566
           +D   G       P  +G + V GP V  GY+KN   TN++  +D+ G  W  TGD+G
Sbjct: 196 IDWPEGGYSTNDSPMPRGEIVVGGPNVTLGYFKNEEKTNESYKVDERGVRWFYTGDIG 369


>TC15125 weakly similar to UP|Q84P20 (Q84P20) Acyl-activating enzyme 12,
           partial (48%)
          Length = 1164

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 67/313 (21%), Positives = 127/313 (40%), Gaps = 16/313 (5%)
 Frame = +1

Query: 86  RSSAEKYGDKVALVDQYHHPPSTITYNQLEQAILDYAEGLRVIGVRPDEKLALFADNSCR 145
           + +A  Y ++V+++    H     T++Q  +     A  LR + +  ++ +++ A N   
Sbjct: 163 KRAAASYPNRVSVI----HEGIRFTWSQTYERCRRLAFTLRSLNIAKNDVVSVLAPNIPA 330

Query: 146 WLVADQGMMASGAINVVRGSRSSVEELLQIYNHSESVALAVDGPEMFNRIAKPFYSKTGM 205
                  +  +GA+     SR   + +  I +HSE+    VD  E  N+      ++  +
Sbjct: 331 MYEMHFAVPMAGAVLNTINSRLDAKNIATILSHSEAKIFFVDY-EYVNK------AREAL 489

Query: 206 RFIILLWGEKSDLNLIAEENKEVPIFSFMEVIDLGRESRMALSDS----HEASQRYVYEA 261
           R +++  G K   N   ++   +P+   ++ I+     R+   +     H  +  YV E 
Sbjct: 490 RMLVVQKGVKP--NSTEQDYSTLPLVIVIDDINSPTGVRLGELEYEQMVHRGNPNYVPEE 663

Query: 262 INSD-DIATLIYTSGTTGNPKGVMLTHRNLLHQIKNL---WDTVPAEVGDRFLSMLPPWH 317
           I  +     L YTSGTT  PKGV+ +HR       +L   W+     V   +L  LP +H
Sbjct: 664 IQEEWSPIALNYTSGTTSEPKGVVYSHRGAYLSTLSLVLGWEMGSEPV---YLWTLPMFH 834

Query: 318 AYERACEYFIFTCGIEQ---VYTTVRN-----LKDDLGRYQPHYMISVPLVFETLYSGIQ 369
                C  + F  G+         +RN     +   +  +   +M   P+VF  +     
Sbjct: 835 -----CNGWTFPWGVAARGGTNVCIRNCAASDIYRSISLHNVTHMCCAPIVFNII----- 984

Query: 370 KQISTSPPVRKLV 382
             +   P  RK++
Sbjct: 985 --LGAKPSERKVI 1017


>TC17423 similar to PIR|H85064|H85064 4-coumarate-CoA ligase-like protein
           [imported] - Arabidopsis                thaliana
           {Arabidopsis thaliana;}, partial (25%)
          Length = 655

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 46/181 (25%), Positives = 79/181 (43%)
 Frame = +1

Query: 542 GYYKNPLATNQALDKDGWLNTGDLGWIAPHHSTGRSRNSSGVIVVDGRAKDTIVLSTGEN 601
           GY+ NP AT   LDK GW++TGD+G+           +  G + V  R K+ ++   G  
Sbjct: 16  GYHNNPEATKLTLDKKGWVHTGDVGYF----------DEDGQLYVVDRIKE-LIKYKGFQ 162

Query: 602 VEPAELEEAAMRSSIIQQIVVIGQDKRRLGAIIVPNSEEVLKVARELSIIDSISSNVVSE 661
           V PAELE   +    I            L A +VP  ++         ++ S +S     
Sbjct: 163 VAPAELEGLLVSHPEI------------LDAAVVPYPDDEAGEVPIAYVVRSPNS----- 291

Query: 662 EKVLNLIYKELKTWMSESPFQIGPILLVNEPFTIDNGLMTPTMKIRRDRVVAKYKEQIDD 721
               +L  K+++ +++    Q+ P   +     I +   T + K+ R  ++AK K +I D
Sbjct: 292 ----SLTEKQIQEFIAS---QVAPFKKLRRVTFISSVPKTASGKLLRRELIAKAKSKI*D 450

Query: 722 L 722
           +
Sbjct: 451 I 453


>AW719487 
          Length = 498

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 42/169 (24%), Positives = 71/169 (41%)
 Frame = +2

Query: 546 NPLATNQALDKDGWLNTGDLGWIAPHHSTGRSRNSSGVIVVDGRAKDTIVLSTGENVEPA 605
           +P AT + +DK+GWL+TGD+G+I              + +VD R K+ ++   G  V PA
Sbjct: 5   DPEATERTIDKEGWLHTGDIGYI---------DEDDELFIVD-RLKE-LIKYKGFQVAPA 151

Query: 606 ELEEAAMRSSIIQQIVVIGQDKRRLGAIIVPNSEEVLKVARELSIIDSISSNVVSEEKVL 665
           ELE   +    I  + V            VP  +E         ++ S      +E+++ 
Sbjct: 152 ELEALILSHPKISDVAV------------VPMKDEAAGEVPVAFVVRSNGCTDTTEDEIK 295

Query: 666 NLIYKELKTWMSESPFQIGPILLVNEPFTIDNGLMTPTMKIRRDRVVAK 714
             + K++  +             +N  F ID    +P+ KI R  + AK
Sbjct: 296 QFVSKQVVFYKR-----------INRVFFIDAIPKSPSGKILRKDLRAK 409


>AV409031 
          Length = 343

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = +3

Query: 266 DIATLIYTSGTTGNPKGVMLTHRNLLHQIKNLWDTVPAEVGDRFLSMLPPWHAY 319
           DIA  ++TSGTT  PKGV L+  NL   ++N+         D  + +LP +H +
Sbjct: 117 DIALFLHTSGTTSRPKGVPLSQHNLASSVRNIQSVYRLTESDSTVIVLPLFHVH 278


>TC18806 similar to UP|Q8S564 (Q8S564) 4-coumarate:coenzyme A ligase  ,
           partial (26%)
          Length = 529

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 30/105 (28%), Positives = 54/105 (50%), Gaps = 6/105 (5%)
 Frame = +1

Query: 427 IATILFPIHLLAIKFVYSKIHSAIGLSKAGISGGGSLPLEVDKFFEAI--GVKVQNGYGL 484
           +A+ + PI L  +K   +  +    + +  I+G   + +E+++  +A     K+  GYG+
Sbjct: 103 VASFVPPIVLALVKSGEAHQYDLSSI-RVMITGAAPMGMELEEAVKARLPQAKLGQGYGM 279

Query: 485 TETSPVIA----ARRPRCNVIGSVGHPVQHTEFKVVDSETGEVLP 525
           TE  P+      A+ P     G+ G  V++ E K+VD+ETG  LP
Sbjct: 280 TEAGPLAISLAFAKEPFKTKSGACGTVVRNAEMKIVDTETGASLP 414


>TC15126 similar to UP|Q84P19 (Q84P19) Acyl-activating enzyme 11, partial
           (25%)
          Length = 749

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 44/208 (21%), Positives = 90/208 (43%), Gaps = 5/208 (2%)
 Frame = +2

Query: 86  RSSAEKYGDKVALVDQYHHPPSTITYNQLEQAILDYAEGLRVIGVRPDEKLALFADNSCR 145
           + +A  Y ++ +++    H  +  T++Q        A  LR + +  ++ +++ A N   
Sbjct: 149 KRAAASYPNRTSVI----HEGTWFTWSQTYDRCRRLAFSLRSLNIARNDVVSVLAPNIPA 316

Query: 146 WLVADQGMMASGAINVVRGSRSSVEELLQIYNHSESVALAVDGPEMFNRIAKPFYSKTGM 205
                  +  +GA+     +R   + +  I  HSE+    VD  E  N+      ++  +
Sbjct: 317 MYEMHFAVPMAGAVLNTINTRLDAKNIATILRHSEAKVFFVDY-EYVNK------AREAL 475

Query: 206 RFIILLWGEKSDLNLIAEENKEVPIFSFMEVIDLGRESRMALSDSHEASQR----YVYEA 261
           + +++  G  ++ N   +    +P+   ++ I+     R+   +  +  Q     YV E 
Sbjct: 476 KMLVVQKG--AEPNPKEQNYATLPLVIVIDDINSPTGVRLGELEYEQMVQHGNPNYVPEE 649

Query: 262 INSD-DIATLIYTSGTTGNPKGVMLTHR 288
           I  +     L YTSGTT  PKGV+ +HR
Sbjct: 650 IQEEWSPMALNYTSGTTSEPKGVVYSHR 733


>TC11662 similar to UP|O65748 (O65748) Acyl-CoA synthetase  (Fragment) ,
           partial (81%)
          Length = 640

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 35/122 (28%), Positives = 58/122 (46%), Gaps = 4/122 (3%)
 Frame = +1

Query: 607 LEEAAMRSSIIQQIVVIGQDKRR-LGAIIVPNSEEVLKVARELSI---IDSISSNVVSEE 662
           LE    + S I+ I V G      L A++ P  + +   A E  I    DS+  +  ++ 
Sbjct: 7   LENIYGQVSSIESIWVYGNSLESFLVAVVTPRQQALAHWAGENGISLDFDSLCQDSRAKS 186

Query: 663 KVLNLIYKELKTWMSESPFQIGPILLVNEPFTIDNGLMTPTMKIRRDRVVAKYKEQIDDL 722
            VL  + K  K    +    I  + L   PF ++  L+TPT K +R +++  Y+E ID++
Sbjct: 187 YVLGELSKIAKEKKLKGFEFIRAVHLDPVPFDMERDLITPTYKKKRPQLLKYYQEIIDNM 366

Query: 723 YK 724
           YK
Sbjct: 367 YK 372


>TC16844 similar to UP|Q8LRT6 (Q8LRT6) Adenosine monophosphate binding
           protein 1 AMPBP1, partial (25%)
          Length = 663

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 23/70 (32%), Positives = 34/70 (47%)
 Frame = +3

Query: 556 KDGWLNTGDLGWIAPHHSTGRSRNSSGVIVVDGRAKDTIVLSTGENVEPAELEEAAMRSS 615
           K GW  TGDLG           ++  G I +  R+KD I++S GEN+   ELE       
Sbjct: 15  KGGWFRTGDLG----------VKHPDGYIELKDRSKD-IIISGGENISSIELEGVIFSHP 161

Query: 616 IIQQIVVIGQ 625
            + +  V+G+
Sbjct: 162 AVLEAAVVGR 191


>AV772740 
          Length = 555

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = -2

Query: 266 DIATLIYTSGTTGNPKGVMLTHRNLLHQIKNL 297
           +I T++YTSGTTG P  V+LTH N+   ++ +
Sbjct: 329 NICTIMYTSGTTGTPSAVVLTHANITSFVRGM 234


>TC10548 similar to UP|Q940V0 (Q940V0) T23O15.3/T23O15.3, partial (10%)
          Length = 760

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 19/59 (32%), Positives = 38/59 (64%)
 Frame = +3

Query: 665 LNLIYKELKTWMSESPFQIGPILLVNEPFTIDNGLMTPTMKIRRDRVVAKYKEQIDDLY 723
           ++ + K  K   SE P +I    L+ +P+T ++GL+T  +K++R+++ AK+K+ +  LY
Sbjct: 48  ISKVAKASKLEKSEIPKKIK---LLPDPWTPESGLVTAALKLKREQLKAKFKDDLQKLY 215


>BP043696 
          Length = 470

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 15/44 (34%), Positives = 29/44 (65%)
 Frame = +1

Query: 109 ITYNQLEQAILDYAEGLRVIGVRPDEKLALFADNSCRWLVADQG 152
           ++Y+ + +A+  +A GL+ +G   +E++A+FAD    W +A QG
Sbjct: 313 LSYDAVFEAVTSFASGLKELGHGREERVAIFADTREEWFIALQG 444


>TC12490 similar to UP|Q9FFE6 (Q9FFE6) AMP-binding protein (Adenosine
           monophosphate binding protein 5 AMPBP5), partial (21%)
          Length = 387

 Score = 36.6 bits (83), Expect = 0.014
 Identities = 26/119 (21%), Positives = 50/119 (41%), Gaps = 3/119 (2%)
 Frame = +3

Query: 556 KDGWLNTGDLGWIAPHHSTGRSRNSSGVIVVDGRAKDTIVLSTGENVEPAELEEAAMRSS 615
           K+GW  TGD+G +          +  G + +  R+KD +++S GEN+   E+E       
Sbjct: 27  KNGWFYTGDVGVM----------HEDGYLEIKDRSKD-VIISGGENLSTVEVESVLYGHP 173

Query: 616 IIQQIVVIGQDKRRLG---AIIVPNSEEVLKVARELSIIDSISSNVVSEEKVLNLIYKE 671
            + Q  V+ +     G      V   E + +   E  +++    N+        +++KE
Sbjct: 174 AVNQAAVVARADEFWGETPCAFVSLKEGLKETVTEREVVEFCRKNMPHYMVPKTVVFKE 350


>TC10376 similar to UP|Q8VZF1 (Q8VZF1) AT3g16910/K14A17_3 (Adenosine
           monophosphate binding protein 7 AMPBP7), partial (50%)
          Length = 888

 Score = 35.4 bits (80), Expect = 0.032
 Identities = 28/104 (26%), Positives = 48/104 (45%), Gaps = 11/104 (10%)
 Frame = +3

Query: 272 YTSGTTGNPKGVMLTHRN--LLHQIKNL-WDTVPAEVGDRFLSMLPPWHAYERACEYFIF 328
           YTSGTT +PKGV+L HR   L+     L W      V   +L  LP +H     C  + +
Sbjct: 384 YTSGTTASPKGVVLHHRGAYLMSLCGALVWGMTEGAV---YLWTLPMFH-----CNGWCY 539

Query: 329 TCGIEQVY--------TTVRNLKDDLGRYQPHYMISVPLVFETL 364
           T  +  +Y         T + + + + +Y+  +  + P+V  ++
Sbjct: 540 TWTLPAIYGTNICLRQVTAKAVYEAIAKYKVTHFCAAPVVLNSI 671


>BP053582 
          Length = 516

 Score = 32.0 bits (71), Expect(2) = 0.039
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = -1

Query: 536 GPPVMNGYYKNPLATNQALDKDGWLNTGDLGWIAPHHSTGRSRNSSGVIVVDGRAKDTIV 595
           G  ++N Y KN  AT  A  K GW  TGDL            ++  G I +  R+KD I+
Sbjct: 486 G*TLLNRYLKNLKATQDAF-KGGWFRTGDL----------EVKHPDGYIELKDRSKDLII 340



 Score = 21.9 bits (45), Expect(2) = 0.039
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 599 GENVEPAELEEAAMRSSIIQQIVVIGQ 625
           GEN+   ELE+       + +  V+G+
Sbjct: 326 GENISSIELEDVIFSHPAVLEAAVVGR 246


>BP063946 
          Length = 392

 Score = 33.9 bits (76), Expect = 0.094
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -1

Query: 691 EPFTIDNGLMTPTMKIRRDRVVAKYKEQIDDLYK 724
           EP  ++  L+TPT +++R  ++  YK+ ID LY+
Sbjct: 350 EPLDLERDLITPTFQLKRPPLLQCYKDHIDPLYQ 249


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,071,467
Number of Sequences: 28460
Number of extensions: 163358
Number of successful extensions: 937
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of query: 724
length of database: 4,897,600
effective HSP length: 97
effective length of query: 627
effective length of database: 2,136,980
effective search space: 1339886460
effective search space used: 1339886460
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)


Medicago: description of AC146585.9