TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146585.11 + phase: 0 
         (308 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP066906                                                               28  1.5
TC18841                                                                28  2.6
BP037854                                                               26  7.4
TC18861                                                                26  7.4
BP049441                                                               26  9.7
AV415215                                                               26  9.7

>BP066906 
          Length = 386

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 10/32 (31%), Positives = 16/32 (49%)
 Frame = +3

Query: 89  RGDKGTTTVILEAVASHDLWIWHAFFGCPGTL 120
           R ++  T  I+  + S   W+WH  FG P  +
Sbjct: 225 RHEENYTRYIIWILPSFGFWLWHVIFGFPNNI 320


>TC18841 
          Length = 568

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 15/37 (40%), Positives = 19/37 (50%), Gaps = 1/37 (2%)
 Frame = +2

Query: 71  CMHWEWKN-CPKAWEGQFTRGDKGTTTVILEAVASHD 106
           C HWEW+N C K  +G      +G    +L  VA HD
Sbjct: 326 CSHWEWENSCQKYLKG----FSQGYMKPLLAGVA*HD 424


>BP037854 
          Length = 462

 Score = 26.2 bits (56), Expect = 7.4
 Identities = 9/19 (47%), Positives = 12/19 (62%)
 Frame = -1

Query: 97  VILEAVASHDLWIWHAFFG 115
           +I  +V + DLW W  FFG
Sbjct: 282 LIFSSVLALDLWFWELFFG 226


>TC18861 
          Length = 841

 Score = 26.2 bits (56), Expect = 7.4
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
 Frame = +3

Query: 51  QRILHVSEMRGFPGMIGSIDCMH-----WEWK 77
           +RILH+ ++ G+ G +GS+  +      W WK
Sbjct: 213 RRILHLFQLNGYLG*MGSVKRLQLLRK*WSWK 308


>BP049441 
          Length = 555

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 11/24 (45%), Positives = 15/24 (61%)
 Frame = -1

Query: 90  GDKGTTTVILEAVASHDLWIWHAF 113
           GD   T +ILE V  H + I+H+F
Sbjct: 90  GDWSFTNIILEVVRLHSI*IFHSF 19


>AV415215 
          Length = 430

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 27  RRFCKGIIRLYEQVYLRAPTQDDLQRILHVSEMRGF 62
           RRFC+G++ L   V      + +L+ ++   E RGF
Sbjct: 151 RRFCRGVLSLVVTVVFHLVCKCNLE-VIETDEKRGF 47


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.139    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,834,619
Number of Sequences: 28460
Number of extensions: 79964
Number of successful extensions: 394
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of query: 308
length of database: 4,897,600
effective HSP length: 90
effective length of query: 218
effective length of database: 2,336,200
effective search space: 509291600
effective search space used: 509291600
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)