TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146575.8 - phase: 0 
         (1078 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP043858                                                              307  7e-84
TC10731 similar to PIR|T51557|T51557 Exportin1 (XPO1) protein - ...   281  3e-76
BP066811                                                              129  6e-56
TC14571 homologue to PIR|T51557|T51557 Exportin1 (XPO1) protein ...    68  9e-12

>BP043858 
          Length = 546

 Score =  307 bits (786), Expect = 7e-84
 Identities = 151/158 (95%), Positives = 155/158 (97%)
 Frame = +3

Query: 1   MAAEKLRDLSQPIDVPLLDATVAAFYGTGSKEQRTAADQILRELQNNPDMWLQVMHILQN 60
           MAAEKLRDLSQPIDVPLLDATVAAFYGTGSKEQRTAADQILR+LQNNPDMWLQVMHILQN
Sbjct: 72  MAAEKLRDLSQPIDVPLLDATVAAFYGTGSKEQRTAADQILRDLQNNPDMWLQVMHILQN 251

Query: 61  TQNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNFISDVIVQLSRNEASFRTERLYVNK 120
           TQNLNTKFFALQVLEGVIKYRWNALP+EQRDGMKNFISD+IVQLS NEASFR ERLYVNK
Sbjct: 252 TQNLNTKFFALQVLEGVIKYRWNALPLEQRDGMKNFISDIIVQLSGNEASFRMERLYVNK 431

Query: 121 LNIILVQILKHEWPARWRNFIPDLVSAAKTSETICENC 158
           LNIILVQILKHEWP RWR+FIPDLVSAAKTSETICENC
Sbjct: 432 LNIILVQILKHEWPLRWRSFIPDLVSAAKTSETICENC 545


>TC10731 similar to PIR|T51557|T51557 Exportin1 (XPO1) protein - Arabidopsis
            thaliana (fragment) {Arabidopsis thaliana;}, partial
            (14%)
          Length = 595

 Score =  281 bits (720), Expect = 3e-76
 Identities = 139/149 (93%), Positives = 143/149 (95%)
 Frame = +3

Query: 930  EIFAVLTDTFHKPGFKLHVLVLQHLLCLAESGALTEPLWDAATNSYPYPSNGAFVREYTI 989
            EIFAVLTDTFHKPGFKLHVLVLQHL CLAE+GALTEPLWDAATN YPYPSN AFV EYTI
Sbjct: 3    EIFAVLTDTFHKPGFKLHVLVLQHLFCLAETGALTEPLWDAATNPYPYPSNAAFVLEYTI 182

Query: 990  KLLSTSFPNMTAAEVTQFVNGLFESTNDLSTFKTHIRDFLIQSKEFSAQDNKDLYAEEAA 1049
            KLLSTSFPNMTAAEVTQFVNGLFESTNDLSTFK HIRDFL+QSKEFSAQDNKDLYAEEAA
Sbjct: 183  KLLSTSFPNMTAAEVTQFVNGLFESTNDLSTFKNHIRDFLVQSKEFSAQDNKDLYAEEAA 362

Query: 1050 AQRERERQRMLSIPGLIAPVELQDEMVDS 1078
            AQRERERQRMLS+PGLIAP ELQDEM+DS
Sbjct: 363  AQRERERQRMLSVPGLIAPSELQDEMLDS 449


>BP066811 
          Length = 460

 Score =  129 bits (325), Expect(3) = 6e-56
 Identities = 63/64 (98%), Positives = 64/64 (99%)
 Frame = +3

Query: 9   LSQPIDVPLLDATVAAFYGTGSKEQRTAADQILRELQNNPDMWLQVMHILQNTQNLNTKF 68
           LSQPIDVPLLDATVAAFYGTGSKEQRTAADQILR+LQNNPDMWLQVMHILQNTQNLNTKF
Sbjct: 78  LSQPIDVPLLDATVAAFYGTGSKEQRTAADQILRDLQNNPDMWLQVMHILQNTQNLNTKF 257

Query: 69  FALQ 72
           FALQ
Sbjct: 258 FALQ 269



 Score =  106 bits (264), Expect(3) = 6e-56
 Identities = 52/58 (89%), Positives = 55/58 (94%)
 Frame = +2

Query: 71  LQVLEGVIKYRWNALPVEQRDGMKNFISDVIVQLSRNEASFRTERLYVNKLNIILVQI 128
           +QVLEGVIKYRWNALP+EQRDGMKNFISD+ VQLS NEASFR ERLYVNKLNIILVQI
Sbjct: 287 IQVLEGVIKYRWNALPLEQRDGMKNFISDIXVQLSGNEASFRMERLYVNKLNIILVQI 460



 Score = 21.2 bits (43), Expect(3) = 6e-56
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 1  MAAEKLRDLSQP 12
          MAAEKLRD   P
Sbjct: 55 MAAEKLRDCPNP 90


>TC14571 homologue to PIR|T51557|T51557 Exportin1 (XPO1) protein - Arabidopsis
            thaliana (fragment) {Arabidopsis thaliana;}, partial (3%)
          Length = 677

 Score = 67.8 bits (164), Expect = 9e-12
 Identities = 34/37 (91%), Positives = 35/37 (93%)
 Frame = +2

Query: 1042 DLYAEEAAAQRERERQRMLSIPGLIAPVELQDEMVDS 1078
            DLYAEEAAAQRERER RML+IPGLIAP ELQDEMVDS
Sbjct: 2    DLYAEEAAAQRERERPRMLAIPGLIAPNELQDEMVDS 112


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,310,556
Number of Sequences: 28460
Number of extensions: 210087
Number of successful extensions: 1001
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of query: 1078
length of database: 4,897,600
effective HSP length: 100
effective length of query: 978
effective length of database: 2,051,600
effective search space: 2006464800
effective search space used: 2006464800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)