BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146573.8 + phase: 0
(964 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV780009 143 1e-34
BP066094 109 7e-26
BP075943 114 1e-25
BP057233 92 3e-19
BP084332 89 3e-18
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 82 3e-16
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p... 81 9e-16
BP043850 75 6e-14
TC9039 68 6e-12
BP084259 65 5e-11
AV424544 64 9e-11
BI418295 64 1e-10
AV766665 62 4e-10
TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%) 59 3e-09
TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partia... 59 3e-09
TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 58 8e-09
TC10186 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprot... 47 2e-07
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 50 2e-06
AV767042 47 1e-05
AV779281 45 4e-05
>AV780009
Length = 529
Score = 143 bits (361), Expect = 1e-34
Identities = 72/176 (40%), Positives = 103/176 (57%)
Frame = -1
Query: 771 QHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISW 830
Q R+LRY+K G+ + L LQ Y+D+DW G D R S + Y I+ G + ISW
Sbjct: 529 QAATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISW 350
Query: 831 LSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSN 890
++KQ TV+RSS+EAEYRA+A E+ W++ L L + + P L CDN A ++ N
Sbjct: 349 RTKKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFLKLNVPLPVPLFCDNQSALHIAHN 170
Query: 891 PVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKFEELRSK 946
P H + KHI LD H VR +++ G + + +ST QLAD+ TKP P F L ++
Sbjct: 169 PTFHERTKHIELDCHVVRAKLQAGLIHLLPISTHHQLADIFTKPCPHLCFPLLGAR 2
>BP066094
Length = 532
Score = 109 bits (272), Expect(2) = 7e-26
Identities = 49/148 (33%), Positives = 88/148 (59%)
Frame = +2
Query: 532 RPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHKA 591
+ + I+L+++ ++ +HQ++V +AFL G ++EEVY+ QPPG +D + ++ KL K+
Sbjct: 89 KTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKKS 268
Query: 592 IYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDAS 651
+YGL+QAPRAW++ L +F+ + + D +LF + +YVDD++ + S
Sbjct: 269 LYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANPS 448
Query: 652 FLHHFIQSLSNRFSLKHMGTPHYFLGIE 679
F + + F ++ MG YFLGI+
Sbjct: 449 LCKEFSEMMQAEFEMRMMGELKYFLGIQ 532
Score = 25.8 bits (55), Expect(2) = 7e-26
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 515 FTQCPGVDFKETFAPVVR 532
++Q G+D+ ETFAPV R
Sbjct: 39 YSQQ*GIDYTETFAPVAR 92
>BP075943
Length = 547
Score = 114 bits (284), Expect = 1e-25
Identities = 62/154 (40%), Positives = 89/154 (57%), Gaps = 1/154 (0%)
Frame = -3
Query: 628 ASGTTLAYFLVYVDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVL 687
AS + L+YVDD+LL GND + SL ++F +K +G YFLG+E+ S + +
Sbjct: 545 ASSGSFTALLLYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGI 366
Query: 688 FLSQHKFIRDILQRFDMDAAKPTYTPLSTTS-TLTLNDGTAAADSTLYRQIIGALQYLNL 746
L+Q K+ ++ +P + T S TL N GT D YR+I+G L YLN
Sbjct: 365 VLNQRKYALQLISDSGHFGFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNT 186
Query: 747 TRPDLSFAINKLSQFMHKPTSLHFQHLKRLLRYL 780
TRPD++FA+N+LSQF+ PT +H Q L L+YL
Sbjct: 185 TRPDITFAVNQLSQFLSAPTDIHEQQLTGFLKYL 84
>BP057233
Length = 473
Score = 92.4 bits (228), Expect = 3e-19
Identities = 41/92 (44%), Positives = 62/92 (66%)
Frame = -2
Query: 869 IPLSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLA 928
+P+ + P+L CDN+ A L SNPVLH++ KHI +D H++R+QV ++ V++V T DQ+A
Sbjct: 469 LPMPRKPILWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPTTDQIA 290
Query: 929 DLLTKPLPRAKFEELRSKMKVTDGNFILRGHI 960
D LTKPL +F +LR K+ V + RG +
Sbjct: 289 DCLTKPLSHTRFSQLRDKLGVIHSPPV*RGEL 194
>BP084332
Length = 368
Score = 89.4 bits (220), Expect = 3e-18
Identities = 44/106 (41%), Positives = 64/106 (59%)
Frame = +2
Query: 835 QRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLH 894
Q T+A S+ EAEY + A + +++W+ + L + I S P+ CDN A L NP+LH
Sbjct: 32 QSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIY-CDNTAAISLSKNPILH 208
Query: 895 SKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKF 940
S+ KHI + YHF+R+ V+ G L + V T Q AD+ TKPL +F
Sbjct: 209 SRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRF 346
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 82.4 bits (202), Expect = 3e-16
Identities = 34/89 (38%), Positives = 57/89 (63%)
Frame = +1
Query: 859 WITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGKLQV 918
W+T LL +L +P +P L+ CDN A ++ +NPV H + KHI +D H VRE+++ G + +
Sbjct: 4 WLTYLLQDLKVPFEQPALVYCDNNSARHIAANPVFHERTKHIEIDCHIVRERIQKGLIHL 183
Query: 919 SHVSTKDQLADLLTKPLPRAKFEELRSKM 947
+S+ + LAD+ TK L F ++ +K+
Sbjct: 184 LPISSSEPLADIYTKALSPQNFHQICAKL 270
>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
Length = 670
Score = 80.9 bits (198), Expect = 9e-16
Identities = 37/94 (39%), Positives = 57/94 (60%)
Frame = +1
Query: 856 EIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGK 915
E+ W+T +L +L +P P LL CD+ A ++ +N V H + KH+ +D H VRE+++
Sbjct: 4 EL*WLTYILQDLRVPFISPSLLYCDSQSARHIATNAVFHERTKHLDIDCHVVREKLQAKL 183
Query: 916 LQVSHVSTKDQLADLLTKPLPRAKFEELRSKMKV 949
+ +S+ DQ AD+LTKPL F L SK+ V
Sbjct: 184 FHLLPISSVDQTADILTKPLESGPFSHLVSKLGV 285
>BP043850
Length = 515
Score = 74.7 bits (182), Expect = 6e-14
Identities = 40/97 (41%), Positives = 56/97 (57%)
Frame = -1
Query: 855 AEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDG 914
+EI+W+ LLSEL S+P L DN A + +NPV H +HI +D H VRE
Sbjct: 515 SEIIWLRGLLSELGFLQSQPTPLHADNTSAIQIAANPVYHEWTRHIEVDCHSVREAYDRR 336
Query: 915 KLQVSHVSTKDQLADLLTKPLPRAKFEELRSKMKVTD 951
+ + HVST Q+AD+LTK L R + L SK+ + +
Sbjct: 335 VITLPHVSTSVQIADILTKSLTRQRHNFLVSKLMLVE 225
>TC9039
Length = 1218
Score = 68.2 bits (165), Expect = 6e-12
Identities = 53/228 (23%), Positives = 100/228 (43%), Gaps = 5/228 (2%)
Frame = +2
Query: 21 KPEPAEKHVDYNYWRRQDKLILHAILSSV-EASIITMLGNVKNSKDAWDILNKMFASKTR 79
K +E+ DY W R +++ L I + E T+ +K +KD + K FA +
Sbjct: 266 KSSTSEQRKDYEKWDRSNRMSLMIIKRGIPEVFRGTISEEIKGAKDFLAEIEKRFAKSDK 445
Query: 80 ARIMHLKERLTRTS-KGSKSVSEYLQAIKAISDELAIINKPIDDDDLVIHAPNGLGSEFK 138
A L + L +G ++ EY+ + I+ +L + + DD L+ L ++F
Sbjct: 446 AETSTLLQNLISMKYQGKGNIREYIMGMSNIASKLKALKLELSDDLLIHLVLLSLPAQFS 625
Query: 139 EIAAALRTRENAIAFDELHDILVDHETFLQRDQEPTIIPTAQVAYRGKPKYHKNGSFHNH 198
+ + + + +EL V E L+++++ + + +GK K
Sbjct: 626 QFKISYNCPKEKWSLNELISFCVQEEERLKQERKESAHFVSTSKDKGKRK--------KT 781
Query: 199 INPSVNNISDSQGQQKQV---MCQFCDKSGHTAKECYKIHGYPSKNGV 243
+ P N +D+ +KQ C FC+ SGH K+C K H + ++ G+
Sbjct: 782 VEPK-NEAADAPAPKKQKEDDTCYFCNVSGHMKKKCTKYHAWRARKGL 922
>BP084259
Length = 385
Score = 65.1 bits (157), Expect = 5e-11
Identities = 27/59 (45%), Positives = 37/59 (61%)
Frame = -3
Query: 848 RAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHF 906
R + + AE +W+ LL EL L K P + +N+ ATY+C N V HS MKH++LD HF
Sbjct: 179 RTIGSTAAEFLWLQQLLKELQFSLPKVPCIFSNNINATYVCLNLVFHSHMKHVALDCHF 3
>AV424544
Length = 276
Score = 64.3 bits (155), Expect = 9e-11
Identities = 35/89 (39%), Positives = 49/89 (54%)
Frame = +3
Query: 606 LKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDASFLHHFIQSLSNRFS 665
L +++ G+ S D SLF + LVYVDDL+L GND + + L +F
Sbjct: 9 LSSYLHILGYIQSAHDHSLFTKFRDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQFR 188
Query: 666 LKHMGTPHYFLGIELIPSKTVLFLSQHKF 694
+K +GT YFLG+E+ S LFLSQ K+
Sbjct: 189 IKDLGTLKYFLGLEVARSSCGLFLSQRKY 275
>BI418295
Length = 523
Score = 63.5 bits (153), Expect = 1e-10
Identities = 33/132 (25%), Positives = 68/132 (51%)
Frame = +2
Query: 25 AEKHVDYNYWRRQDKLILHAILSSVEASIITMLGNVKNSKDAWDILNKMFASKTRARIMH 84
A ++ Y W +QD ++ +L+++ ++ + N + S W + F ++ RA+
Sbjct: 119 ATENPAYTTWIKQDSMVFTWLLTTLSPFVLPTVINCERSSQVWREILDFFENQCRAQSAK 298
Query: 85 LKERLTRTSKGSKSVSEYLQAIKAISDELAIINKPIDDDDLVIHAPNGLGSEFKEIAAAL 144
L+ L +KGSKS++EYL+ IK I + L I +P+ D + +GL ++ ++ +
Sbjct: 299 LRSELKNITKGSKSITEYLRRIKTIVNTLVSIGEPVSFRDHLEAIFDGLPEDYSALSTII 478
Query: 145 RTRENAIAFDEL 156
T ++ E+
Sbjct: 479 FTHASSSTISEV 514
>AV766665
Length = 601
Score = 62.0 bits (149), Expect = 4e-10
Identities = 32/75 (42%), Positives = 46/75 (60%)
Frame = +3
Query: 775 RLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSRK 834
R+ YLKA G L +K ++ +T AD+ G+I DR ST Y ++ GN ++W S++
Sbjct: 372 RIF*YLKANSRRGPLFQKEGKSSMDGFTYADYLGSIVDRLSTMGYYMFLSGNLVTWRSKQ 551
Query: 835 QRTVARSSTEAEYRA 849
Q +ARSS EAE RA
Sbjct: 552 QNIIARSSGEAELRA 596
>TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%)
Length = 550
Score = 59.3 bits (142), Expect = 3e-09
Identities = 29/80 (36%), Positives = 47/80 (58%)
Frame = +3
Query: 856 EIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGK 915
E +W+T L++L I ++ CDN A +L +N V H + ++I +D H V +V G
Sbjct: 21 EALWLTYALADLRIASLLLVVIYCDNRSALHLAANSVFHKRTENIEIDCHIV*VKVLFGI 200
Query: 916 LQVSHVSTKDQLADLLTKPL 935
L + HV + DQ+AD+ TK +
Sbjct: 201 LHLLHVPSSDQVADVFTKTI 260
>TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partial (20%)
Length = 739
Score = 59.3 bits (142), Expect = 3e-09
Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 4/146 (2%)
Frame = -1
Query: 691 QHKFIRDILQRFDMDAAKPTYTPLSTTSTLT-LNDGTAAADSTLYRQIIGALQYLNLTRP 749
Q ++ DIL++F M +K T + +G DST Y+ +IG+++YLN R
Sbjct: 739 QKIYVDDILKKFKMTNSKYISTTIGGKEIEAGRRNGGKRVDSTYYKSLIGSVRYLNTVRS 560
Query: 750 DLSFAINKLSQFMHKPTSLHFQHLKRLLRYLKATINFGI---LLKKTNALTLQVYTDADW 806
D+ + S+FM +P H Q +R LRY+K T+ GI ++ N+L Q+ T
Sbjct: 559 DIVCGVGLRSRFM-EP*DCH*QGAQRSLRYIKGTLKDGIFMLVITM*NSLDTQIVT---- 395
Query: 807 DGNIDDRTSTSAYLIYFGGNPISWLS 832
Y + G ISW S
Sbjct: 394 ---------RPGYAFHLGRGAISWSS 344
>TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (6%)
Length = 498
Score = 57.8 bits (138), Expect = 8e-09
Identities = 37/124 (29%), Positives = 59/124 (46%), Gaps = 2/124 (1%)
Frame = +3
Query: 820 LIYFGGNPISWLSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLC 879
L+ F G ++W SR Q+ VA S+ EAE+ A A E++W+ N L P+L C
Sbjct: 3 LVTFAGGAVAWPSRLQKCVALSTAEAEFIAATEACHELLWMKNFLQNAW--FHSHPILCC 176
Query: 880 DNVGATYLCSNPVLHSKMKHISLDYHFV--REQVRDGKLQVSHVSTKDQLADLLTKPLPR 937
+ +L +L + + R+ + L++ + T D AD++TK LPR
Sbjct: 177 IVITKALFTLARILLFIQDPSTLMFVIIGLRDVLNSKLLELEKIHTDDDGADMMTKSLPR 356
Query: 938 AKFE 941
K E
Sbjct: 357 EKLE 368
>TC10186 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein,
partial (4%)
Length = 528
Score = 47.0 bits (110), Expect(2) = 2e-07
Identities = 20/51 (39%), Positives = 32/51 (62%)
Frame = +3
Query: 899 HISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKFEELRSKMKV 949
+I YHF+R+QV GK+ + H T Q+AD++TK L +F +R+ + V
Sbjct: 69 NIETKYHFLRDQVTKGKISLKHCGTDLQVADIMTKGLKTERFRNMRAMLNV 221
Score = 25.8 bits (55), Expect(2) = 2e-07
Identities = 11/21 (52%), Positives = 12/21 (56%)
Frame = +2
Query: 880 DNVGATYLCSNPVLHSKMKHI 900
DN A L NPV H + KHI
Sbjct: 5 DNKSAIDLAKNPVSHGRSKHI 67
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 50.1 bits (118), Expect = 2e-06
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Frame = +2
Query: 608 TFITSHGFTTSQSDPSLFIYA-SGTTLAYFLVYVDDLLLTGNDASFLHHFIQSLSNRFSL 666
+FI S G+ SD + L+YVDD+L+ G + + L+ F +
Sbjct: 8 SFIMSLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDM 187
Query: 667 KHMGTPHYFLGIELIPSKTV--LFLSQHKFIRDILQRFDMDAAKPTYTPLSTTSTLT 721
K +G + LG+++ + ++LSQ +++ +L+RF+M P TPL L+
Sbjct: 188 KDLGPANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYKLS 358
>AV767042
Length = 444
Score = 47.4 bits (111), Expect = 1e-05
Identities = 20/44 (45%), Positives = 31/44 (70%)
Frame = -3
Query: 517 QCPGVDFKETFAPVVRPQTIKLILTIALTKGWKMHQLDVNNAFL 560
Q GVD +TF+PVV+P I+ + TIAL++ W + QL+V N ++
Sbjct: 349 QTAGVDCNKTFSPVVKPAPIRTVFTIALSRSWPIPQLNVQNLWI 218
>AV779281
Length = 505
Score = 45.4 bits (106), Expect = 4e-05
Identities = 23/79 (29%), Positives = 42/79 (53%)
Frame = +1
Query: 31 YNYWRRQDKLILHAILSSVEASIITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERLT 90
Y W +QD + +LSS+ +++ + N S + + F + + A+ L+ L
Sbjct: 250 YQLWEQQDSALFTWLLSSLSPTVLPTVVNCSQSWQVREAVLDFFKAHSFAQSTQLRSELR 429
Query: 91 RTSKGSKSVSEYLQAIKAI 109
+KGSK+ S+YL+ IK+I
Sbjct: 430 SIAKGSKTCSDYLKRIKSI 486
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,933,245
Number of Sequences: 28460
Number of extensions: 301196
Number of successful extensions: 4102
Number of sequences better than 10.0: 488
Number of HSP's better than 10.0 without gapping: 2909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3600
length of query: 964
length of database: 4,897,600
effective HSP length: 99
effective length of query: 865
effective length of database: 2,080,060
effective search space: 1799251900
effective search space used: 1799251900
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC146573.8