BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146573.2 - phase: 0
(226 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11452 similar to UP|AAQ88400 (AAQ88400) CaCBF1B, partial (33%) 116 3e-27
BP036840 100 2e-22
AV419438 100 3e-22
TC19692 similar to UP|Q9LYD3 (Q9LYD3) Transcription factor like ... 89 8e-19
TC10508 similar to UP|AAQ88400 (AAQ88400) CaCBF1B, partial (21%) 75 9e-15
TC19103 homologue to UP|Q7Y0Y9 (Q7Y0Y9) Dehydration responsive e... 69 5e-13
TC14319 similar to UP|AP23_ARATH (P42736) AP2 domain transcripti... 67 2e-12
TC10014 similar to UP|Q8LLR3 (Q8LLR3) Ethylene-responsive elemen... 65 1e-11
TC13128 similar to AAS46630 (AAS46630) At5g21960, partial (40%) 65 1e-11
TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%) 62 8e-11
TC14917 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {Ar... 60 2e-10
TC15600 homologue to UP|BAD01556 (BAD01556) ERF-like protein, pa... 60 2e-10
TC9975 similar to UP|AAR15448 (AAR15448) AP2 transcription facto... 59 9e-10
TC14961 similar to UP|Q9LEM7 (Q9LEM7) AP2-domain DNA-binding pro... 59 9e-10
TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%) 58 2e-09
TC7954 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein... 57 2e-09
AI967551 57 3e-09
TC9504 similar to UP|Q9SXS8 (Q9SXS8) Ethylene responsive element... 56 4e-09
BP073977 56 6e-09
TC14193 similar to UP|Q8S2S7 (Q8S2S7) Ethylene responsive elemen... 56 6e-09
>TC11452 similar to UP|AAQ88400 (AAQ88400) CaCBF1B, partial (33%)
Length = 430
Score = 116 bits (291), Expect = 3e-27
Identities = 55/83 (66%), Positives = 67/83 (80%)
Frame = +2
Query: 19 ETSSSEVILASARPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCEMRVPNINVNKNNKSR 78
+ +SEV LA++ PKKRAGR+ F+ETRHPVYRGVR R++ KWVCE+R P N K+R
Sbjct: 200 DQDNSEVFLAASNPKKRAGRKKFRETRHPVYRGVRWRDSGKWVCEVREP------NKKTR 361
Query: 79 IWLGTYPTPEMAARAHDVAALTL 101
IWLGT+PTPEMAARAHDVAA+ L
Sbjct: 362 IWLGTFPTPEMAARAHDVAAIAL 430
>BP036840
Length = 584
Score = 100 bits (249), Expect = 2e-22
Identities = 52/97 (53%), Positives = 66/97 (67%)
Frame = +3
Query: 44 TRHPVYRGVRRRNNNKWVCEMRVPNINVNKNNKSRIWLGTYPTPEMAARAHDVAALTLKG 103
TRHPVYRGVR+R +WV E+R P KSRIWLG++P PEMAA+A+DVAA LKG
Sbjct: 72 TRHPVYRGVRKRRWGRWVSEIREPR------KKSRIWLGSFPVPEMAAKAYDVAAYCLKG 233
Query: 104 KSACLNFADSAWRLTLPESNDAVEIRRAAMEAAKMFA 140
+ A LNF D RL +P + A +I+ AA +AA M +
Sbjct: 234 RKAQLNFPDEVDRLPVPATCTARDIQAAAAKAASMMS 344
>AV419438
Length = 272
Score = 100 bits (248), Expect = 3e-22
Identities = 50/76 (65%), Positives = 59/76 (76%), Gaps = 9/76 (11%)
Frame = +3
Query: 1 MNIFLSSFGDYSDSSSSSETSS---------SEVILASARPKKRAGRRVFKETRHPVYRG 51
M++F S+F +++ S ETSS EV+LASARPKKRAGRRVFKETRHPVYRG
Sbjct: 45 MSLFNSTFDEFNYGYQSPETSSYTTTTTRSEEEVVLASARPKKRAGRRVFKETRHPVYRG 224
Query: 52 VRRRNNNKWVCEMRVP 67
VR+RN+NKWVCEMRVP
Sbjct: 225 VRQRNSNKWVCEMRVP 272
>TC19692 similar to UP|Q9LYD3 (Q9LYD3) Transcription factor like protein,
partial (29%)
Length = 454
Score = 88.6 bits (218), Expect = 8e-19
Identities = 49/101 (48%), Positives = 65/101 (63%), Gaps = 2/101 (1%)
Frame = +3
Query: 12 SDSSSSSETSSSEVILASARPKKRAG--RRVFKETRHPVYRGVRRRNNNKWVCEMRVPNI 69
S++ S+S ++S + +S+ P+ +R + H VYRGVR R KWV E+R P
Sbjct: 165 SETESNSNSNSYTSLSSSSPPQSNNNNTKRNRESNTHAVYRGVRMRTWGKWVSEIREPR- 341
Query: 70 NVNKNNKSRIWLGTYPTPEMAARAHDVAALTLKGKSACLNF 110
KSRIWLGT+ TPEMAARAHDVAAL++KG +A LNF
Sbjct: 342 -----KKSRIWLGTFCTPEMAARAHDVAALSIKGSAAILNF 449
>TC10508 similar to UP|AAQ88400 (AAQ88400) CaCBF1B, partial (21%)
Length = 554
Score = 75.1 bits (183), Expect = 9e-15
Identities = 53/133 (39%), Positives = 72/133 (53%), Gaps = 3/133 (2%)
Frame = +2
Query: 97 AALTLKGKSACLNFADSAWRLTLPESNDAVEIRRAAMEAAKMFAIEENHNQRSDRDAVDM 156
AA+ L+G+SACLNFADSAWRL +P + DA IR+AA+EAA+ F R V+
Sbjct: 2 AAIALRGRSACLNFADSAWRLPVPATKDARGIRKAAVEAAEAF-----------RPVVET 148
Query: 157 NM-ENSKKNVLEVQVPVLSSEFEDMHHNLLLSIANEPLRSNPPSPTNYYGSNYD--DMEI 213
E K VP L+ + + + + N L SPT+ +GS Y D+E
Sbjct: 149 ETGEGRKGGESSETVPALTVKVDQEEEAVPEFLRNMALM----SPTHCWGSEYGAADVEF 316
Query: 214 FDTQIVSLWNFSI 226
D + VSLW+FSI
Sbjct: 317 LDAE-VSLWSFSI 352
>TC19103 homologue to UP|Q7Y0Y9 (Q7Y0Y9) Dehydration responsive element
binding protein, partial (37%)
Length = 382
Score = 69.3 bits (168), Expect = 5e-13
Identities = 42/99 (42%), Positives = 58/99 (58%)
Frame = +1
Query: 14 SSSSSETSSSEVILASARPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCEMRVPNINVNK 73
S++S+ T++S S+R KR K + YRG+R+R KWV E+R PN
Sbjct: 76 STNSTITTTSN----SSRENKR------KHQQDKPYRGIRQRKWGKWVAEVREPN----- 210
Query: 74 NNKSRIWLGTYPTPEMAARAHDVAALTLKGKSACLNFAD 112
+SRIWLG+Y +P AARA+D A L+G SA LNF +
Sbjct: 211 -KRSRIWLGSYASPVAAARAYDTAVFYLRGPSARLNFPE 324
>TC14319 similar to UP|AP23_ARATH (P42736) AP2 domain transcription factor
RAP2.3 (Related to AP2 protein 3) (Cadmium-induced
protein AS30), partial (37%)
Length = 1130
Score = 67.4 bits (163), Expect = 2e-12
Identities = 35/72 (48%), Positives = 44/72 (60%)
Frame = +3
Query: 42 KETRHPVYRGVRRRNNNKWVCEMRVPNINVNKNNKSRIWLGTYPTPEMAARAHDVAALTL 101
K R VYRG+R+R KW E+R P V R+WLGT+PT E AARA+D AA +
Sbjct: 381 KNARKNVYRGIRQRPWGKWAAEIRDPQKGV------RVWLGTFPTAEEAARAYDEAAKRI 542
Query: 102 KGKSACLNFADS 113
+G A LNF D+
Sbjct: 543 RGDKAKLNFPDT 578
>TC10014 similar to UP|Q8LLR3 (Q8LLR3) Ethylene-responsive element binding
protein 1, partial (33%)
Length = 580
Score = 64.7 bits (156), Expect = 1e-11
Identities = 47/124 (37%), Positives = 63/124 (49%)
Frame = +3
Query: 4 FLSSFGDYSDSSSSSETSSSEVILASARPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCE 63
F SS G D+++SS + + A AR A +K +RGVRRR K+ E
Sbjct: 180 FDSSDGSSQDTNNSSPSGCKKGSSAEAR-SSHAPPAEWKR-----FRGVRRRPWGKFAAE 341
Query: 64 MRVPNINVNKNNKSRIWLGTYPTPEMAARAHDVAALTLKGKSACLNFADSAWRLTLPESN 123
+R P K N +R+WLGTY T E A A+D AA ++G+ A LNF T PE+
Sbjct: 342 IRDP-----KKNGARVWLGTYETEEEAGLAYDRAAFKIRGRKAKLNFPHLIGSDTQPETA 506
Query: 124 DAVE 127
VE
Sbjct: 507 SVVE 518
>TC13128 similar to AAS46630 (AAS46630) At5g21960, partial (40%)
Length = 512
Score = 64.7 bits (156), Expect = 1e-11
Identities = 38/110 (34%), Positives = 58/110 (52%)
Frame = +2
Query: 42 KETRHPVYRGVRRRNNNKWVCEMRVPNINVNKNNKSRIWLGTYPTPEMAARAHDVAALTL 101
K +YRGVR+R K+V E+R+PN ++ RIWLG+Y + E AARA D A L
Sbjct: 155 KHDSSSIYRGVRKRKWGKYVSEIRLPN------SRQRIWLGSYDSAEKAARAFDAAMFCL 316
Query: 102 KGKSACLNFADSAWRLTLPESNDAVEIRRAAMEAAKMFAIEENHNQRSDR 151
+G+S NF D+ + S +I+ AA A + +++ + R
Sbjct: 317 RGRSGRFNFPDNPPDIAGGRSMTPPQIQAAAAHFANTESGQDSRDTHPGR 466
>TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%)
Length = 632
Score = 62.0 bits (149), Expect = 8e-11
Identities = 43/112 (38%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Frame = +3
Query: 1 MNIFLSSF--GDYSDSSSSSETSSSEVILASARPKKRAGRRVFKETRHPVYRGVRRRNNN 58
+NI + S G S+ S S ETS S S+ + + +E + YRGVRRR
Sbjct: 249 LNISIPSINSGLKSNISQSKETSFSH---QSSSSSSSSDHQTQEEDNNKHYRGVRRRPWG 419
Query: 59 KWVCEMRVPNINVNKNNKSRIWLGTYPTPEMAARAHDVAALTLKGKSACLNF 110
K+ E+R PN SR+WLGT+ T AA+A+D AA ++G A LNF
Sbjct: 420 KFAAEIRDPN-----RKGSRVWLGTFDTAIEAAKAYDRAAFKMRGSRAILNF 560
>TC14917 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {Arabidopsis
thaliana;}, partial (17%)
Length = 1051
Score = 60.5 bits (145), Expect = 2e-10
Identities = 33/75 (44%), Positives = 43/75 (57%)
Frame = +3
Query: 49 YRGVRRRNNNKWVCEMRVPNINVNKNNKSRIWLGTYPTPEMAARAHDVAALTLKGKSACL 108
YRGVR+R KW E+R P +R+WLGT+ T E AARA+D A+L +G A L
Sbjct: 210 YRGVRQRPWGKWAAEIRDPF------KAARVWLGTFNTAEEAARAYDQASLRFRGNKAKL 371
Query: 109 NFADSAWRLTLPESN 123
NF ++ L P N
Sbjct: 372 NFPENVRLLQQPSIN 416
>TC15600 homologue to UP|BAD01556 (BAD01556) ERF-like protein, partial (36%)
Length = 570
Score = 60.5 bits (145), Expect = 2e-10
Identities = 38/109 (34%), Positives = 54/109 (48%), Gaps = 4/109 (3%)
Frame = +3
Query: 6 SSFGDYSDSSSSSETSSSEVILASARPKKRA----GRRVFKETRHPVYRGVRRRNNNKWV 61
+SFG +DS + + KR+ + K R +YRG+R+R KW
Sbjct: 255 NSFGKQNDSQIEKPPIAHQQQQQQPSTFKRSQPHIAEKPMKRQRKNLYRGIRQRPWGKWA 434
Query: 62 CEMRVPNINVNKNNKSRIWLGTYPTPEMAARAHDVAALTLKGKSACLNF 110
E+R P V R+WLGT+ T E AARA+D A ++GK A +NF
Sbjct: 435 AEIRDPRKGV------RVWLGTFNTAEEAARAYDREARKIRGKKAKVNF 563
>TC9975 similar to UP|AAR15448 (AAR15448) AP2 transcription factor, partial
(41%)
Length = 865
Score = 58.5 bits (140), Expect = 9e-10
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Frame = +1
Query: 4 FLSSFGDYSDS---------SSSSETSSSEVILASARPKKRAGRRVFKETRHPVYRGVRR 54
FL SF +D+ +S + T S E +S+ + +G++ + YRGVRR
Sbjct: 22 FLESFSFQADTEVAMSHEAKNSITPTHSGETQKSSSPEPEVSGKQEQTCYQGRRYRGVRR 201
Query: 55 RNNNKWVCEMRVPNINVNKNNKSRIWLGTYPTPEMAARAHDVAALTLKGKSACLNFADSA 114
R K+ E+R P +R+WLGT+ T AA+A+D AA ++G+ A LNF A
Sbjct: 202 RPWGKFAAEIRDPT-----RKGTRVWLGTFDTEIDAAKAYDYAAFRMRGRKAILNFPLEA 366
Query: 115 WRLTLPESNDAVEIRRAAMEA 135
+ + SN + R E+
Sbjct: 367 GKASPKPSNSGRKRGREQRES 429
>TC14961 similar to UP|Q9LEM7 (Q9LEM7) AP2-domain DNA-binding protein,
partial (27%)
Length = 1135
Score = 58.5 bits (140), Expect = 9e-10
Identities = 51/161 (31%), Positives = 70/161 (42%), Gaps = 9/161 (5%)
Frame = +1
Query: 5 LSSFGDYSDSSSSSETSSSEVILASARPKKRAGRRVF--KETRHPVYRGVRRRNNNKWVC 62
L+ + +Y+ SS V A+ K+ + E YRGVR+R KWV
Sbjct: 250 LAKWKEYNAQLDSSNDGDKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVA 429
Query: 63 EMRVPNINVNKNNKSRIWLGTYPTPEMAARAHDVAALTLKGKSACLNFADSAWRLTLPES 122
E+R PN R+WLGT+ T AA A+D AA + G SA LNF + A ES
Sbjct: 430 EIREPN------RGKRLWLGTFATAIGAALAYDEAARAMYGSSARLNFPNVAVSHFSEES 591
Query: 123 -------NDAVEIRRAAMEAAKMFAIEENHNQRSDRDAVDM 156
ND AA+ A + N++ + VDM
Sbjct: 592 LKDSSVANDDSGSSMAAVLANTESKVSSNNSGVGTEEDVDM 714
>TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%)
Length = 1183
Score = 57.8 bits (138), Expect = 2e-09
Identities = 28/56 (50%), Positives = 39/56 (69%)
Frame = +2
Query: 48 VYRGVRRRNNNKWVCEMRVPNINVNKNNKSRIWLGTYPTPEMAARAHDVAALTLKG 103
+YRGVR+R+ KWV E+R+P N++R+WLGT+ T E AA A+D AA L+G
Sbjct: 1028 LYRGVRQRHWGKWVAEIRLPK------NRTRLWLGTFDTAEEAALAYDKAAYKLRG 1177
>TC7954 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein, partial
(75%)
Length = 1708
Score = 57.4 bits (137), Expect = 2e-09
Identities = 33/97 (34%), Positives = 55/97 (56%)
Frame = +2
Query: 14 SSSSSETSSSEVILASARPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCEMRVPNINVNK 73
+S S +++++ + ++ + +K A ++ R YRG+R+R KW E+R P V
Sbjct: 434 NSFSKGSTAAKSVESNEQAEKYASKK-----RKNQYRGIRQRPWGKWAAEIRDPRKGV-- 592
Query: 74 NNKSRIWLGTYPTPEMAARAHDVAALTLKGKSACLNF 110
R+WLGT+ T E AARA+D A ++G A +NF
Sbjct: 593 ----RVWLGTFNTAEEAARAYDAEARRIRGNKAKVNF 691
>AI967551
Length = 466
Score = 57.0 bits (136), Expect = 3e-09
Identities = 38/111 (34%), Positives = 60/111 (53%), Gaps = 7/111 (6%)
Frame = +2
Query: 7 SFGDYSDSSSSSETSSSEVIL----ASARPKKRAGRRVFKET---RHPVYRGVRRRNNNK 59
SF Y+ S +E E++L S++ + G +V + + ++ YRGVRRR K
Sbjct: 137 SFSLYNHSLPFNENDPEEMLLYGMITSSQQQAPIGSKVNEASSMEKNKAYRGVRRRPWGK 316
Query: 60 WVCEMRVPNINVNKNNKSRIWLGTYPTPEMAARAHDVAALTLKGKSACLNF 110
+ E+R + + R+WLGT+ + E AA A+D AA ++G SA LNF
Sbjct: 317 FAAEIRD-----STRHGIRVWLGTFDSAEAAALAYDQAAFAMRGSSATLNF 454
>TC9504 similar to UP|Q9SXS8 (Q9SXS8) Ethylene responsive element binding
factor, partial (35%)
Length = 633
Score = 56.2 bits (134), Expect = 4e-09
Identities = 33/74 (44%), Positives = 43/74 (57%)
Frame = +2
Query: 37 GRRVFKETRHPVYRGVRRRNNNKWVCEMRVPNINVNKNNKSRIWLGTYPTPEMAARAHDV 96
G V KE R YRGVR+R ++ E+R P K+R+WLGT+ + E AARA+D
Sbjct: 407 GSAVLKEPR---YRGVRKRPWGRFAAEIRDPM------KKARVWLGTFDSAEEAARAYDA 559
Query: 97 AALTLKGKSACLNF 110
AA L+G A NF
Sbjct: 560 AARALRGPKAKTNF 601
>BP073977
Length = 424
Score = 55.8 bits (133), Expect = 6e-09
Identities = 38/93 (40%), Positives = 46/93 (48%)
Frame = +2
Query: 9 GDYSDSSSSSETSSSEVILASARPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCEMRVPN 68
G S SSS +SSS S + K Y+GVR R +V E+R PN
Sbjct: 209 GQKSKPVSSSLSSSSSASSESMKKK---------------YKGVRMRTWGSFVSEIRAPN 343
Query: 69 INVNKNNKSRIWLGTYPTPEMAARAHDVAALTL 101
K+RIWLG+Y TPE AARA+D A L L
Sbjct: 344 ------QKTRIWLGSYSTPEAAARAYDAALLCL 424
>TC14193 similar to UP|Q8S2S7 (Q8S2S7) Ethylene responsive element binding
factor 4-like protein, partial (50%)
Length = 1128
Score = 55.8 bits (133), Expect = 6e-09
Identities = 40/142 (28%), Positives = 64/142 (44%), Gaps = 3/142 (2%)
Frame = +3
Query: 12 SDSSSSSETSSSEVILASARPKKRAGRRVFKETRHPV---YRGVRRRNNNKWVCEMRVPN 68
S ++ + +++ A+A A ++ K + + +RGVR+R ++ E+R P
Sbjct: 57 SSTTVTKARNTAAATTAAATTAVSAKSKIHKPSNNATEVHFRGVRKRPWGRYAAEIRDPG 236
Query: 69 INVNKNNKSRIWLGTYPTPEMAARAHDVAALTLKGKSACLNFADSAWRLTLPESNDAVEI 128
KSR+WLGT+ T E AARA+D AA +G A NF S ND V
Sbjct: 237 ------KKSRVWLGTFDTAEEAARAYDAAARQFRGPKAKTNFPQSPSPDNNTGPNDVVVA 398
Query: 129 RRAAMEAAKMFAIEENHNQRSD 150
A ++ + E+ D
Sbjct: 399 NVKANQSPSQSSTVESSTPERD 464
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.314 0.128 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,245,779
Number of Sequences: 28460
Number of extensions: 59950
Number of successful extensions: 558
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of query: 226
length of database: 4,897,600
effective HSP length: 87
effective length of query: 139
effective length of database: 2,421,580
effective search space: 336599620
effective search space used: 336599620
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)
Medicago: description of AC146573.2