TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146573.11 + phase: 2 /pseudo
         (1025 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW720336                                                              183  1e-46
AV407657                                                               35  0.079
AV770669                                                               32  0.51
BI417267                                                               29  4.3
TC9282 similar to UP|Q94LX7 (Q94LX7) Phosphoenolpyruvate carboxy...    28  9.7

>AW720336 
          Length = 559

 Score =  183 bits (465), Expect = 1e-46
 Identities = 93/155 (60%), Positives = 116/155 (74%), Gaps = 5/155 (3%)
 Frame = +1

Query: 876  FLSEKIGKQRNGFEYAALEVKNYLERYMFSNIVSTVMIIFTPQHCSQVKYSPWVCHFHLD 935
            F    +  +  GFEYAALEVKNYLER MFS+IVSTVMI+FTPQ  S   ++PWVCHFHLD
Sbjct: 76   FCRTNLVNRGTGFEYAALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLD 255

Query: 936  KENVTRRKLEVHSIIDSLYQQYDSFRRESKVILPSLKISSN-----EGGETSVGNEKDGE 990
            KE V RRKL VHS+I+SLY++Y+S  +ESKV  P+LKISSN     EGG  S+  EK+  
Sbjct: 256  KEIVARRKLTVHSVIESLYRRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDV 435

Query: 991  DCITVAVVEDSKNSVQLDSVRKSLIPFLLQTAIKG 1025
            DCI+V +VE S++S +L++VR  +IPFLL T IKG
Sbjct: 436  DCISVTIVESSRSSAKLEAVRDLMIPFLLGTVIKG 540



 Score = 51.2 bits (121), Expect = 8e-07
 Identities = 23/26 (88%), Positives = 25/26 (95%)
 Frame = +3

Query: 860 LECGSRKKGGDQTVSLFLSEKIGKQR 885
           LECGSRKK GDQTVSLFLS+K+GKQR
Sbjct: 27  LECGSRKKSGDQTVSLFLSDKLGKQR 104


>AV407657 
          Length = 426

 Score = 34.7 bits (78), Expect = 0.079
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = +1

Query: 233 NQGLQEIG*FQGYSK*VKFSCFGLPE 258
           +QGLQEIG*FQ  S+*VK SC   P+
Sbjct: 145 DQGLQEIG*FQRSSR*VKLSCHQFPK 222


>AV770669 
          Length = 469

 Score = 32.0 bits (71), Expect = 0.51
 Identities = 15/43 (34%), Positives = 23/43 (52%)
 Frame = -2

Query: 107 RVKVCLLPIVKVLFHAYSVLNHSLDTIISPKVANIAVGSLSCH 149
           R ++C LP++  L H Y +    L T + P   +I+  SLS H
Sbjct: 402 RYRICFLPLITFLEHEYGIAFLPLITFLPPITLHISHFSLSIH 274


>BI417267 
          Length = 628

 Score = 28.9 bits (63), Expect = 4.3
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
 Frame = -2

Query: 479 FWSGKQLFSMLLPSKFDYAFPSNDVFVKDGELISCS---------ESSGWLRDSENNVFQ 529
           +WS       LL  KF   F S +VF+     + C+          S GWL + +NN+F 
Sbjct: 267 YWSSGNDGQTLLWEKFQQLFSS*NVFLT--RYVRCNLTIF**LRMRSRGWLSNIDNNIFS 94

Query: 530 SL 531
           ++
Sbjct: 93  AI 88


>TC9282 similar to UP|Q94LX7 (Q94LX7) Phosphoenolpyruvate carboxykinase  ,
           partial (44%)
          Length = 1236

 Score = 27.7 bits (60), Expect = 9.7
 Identities = 15/39 (38%), Positives = 20/39 (50%)
 Frame = -2

Query: 5   QKSF*LTCNLLISYLCYLVLCLQEKISALEINAPGQVTC 43
           + SF  + NL   Y C+L LCLQE   A  +N     +C
Sbjct: 713 RNSFHFSRNLKSKYRCFLELCLQE---ASRVNGINNFSC 606


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.328    0.141    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,172,013
Number of Sequences: 28460
Number of extensions: 260492
Number of successful extensions: 1649
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1648
length of query: 1025
length of database: 4,897,600
effective HSP length: 99
effective length of query: 926
effective length of database: 2,080,060
effective search space: 1926135560
effective search space used: 1926135560
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)