BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146571.8 + phase: 0
(886 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV769619 79 4e-15
AV773398 47 4e-11
TC12667 similar to PIR|D96525|D96525 protein T1N15.19 [imported]... 49 8e-07
TC16745 similar to UP|Q94A14 (Q94A14) At2g43170/F14B2.11, partia... 50 2e-06
TC11415 similar to PIR|G96696|G96696 protein F1N21.14 [imported]... 49 3e-06
TC9861 similar to UP|Q8S8K1 (Q8S8K1) Predicted protein, partial ... 41 0.001
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 39 0.003
AV427209 39 0.004
AV779188 38 0.006
TC12355 similar to UP|PR18_HUMAN (Q99633) Pre-mRNA splicing fact... 36 0.023
AV418628 36 0.023
AV408095 36 0.031
CN825698 34 0.12
TC14326 weakly similar to UP|EXLP_TOBAC (Q03211) Pistil-specific... 33 0.15
TC8089 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinog... 33 0.15
TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%) 28 0.19
TC7888 similar to UP|Q40336 (Q40336) Proline-rich cell wall prot... 33 0.20
AV427911 33 0.20
TC16032 similar to BAC87886 (BAC87886) PGL-3, partial (4%) 33 0.20
TC13338 similar to UP|Q9ZTZ4 (Q9ZTZ4) IFA-binding protein, parti... 33 0.20
>AV769619
Length = 499
Score = 78.6 bits (192), Expect = 4e-15
Identities = 35/85 (41%), Positives = 46/85 (53%), Gaps = 4/85 (4%)
Frame = -3
Query: 330 PPPTPKRRVGRDDVEMKRGDWLCPKCDFMNFAKNNVCLQC----DAKRPKRQLLPGEWEC 385
P P PK+ G DW CPKC FMNFA N C +C + PK+ PG+W C
Sbjct: 452 PEPRPKKNAG---------DWNCPKCQFMNFASNVKCKRCLEPNQNQNPKKY--PGDWNC 306
Query: 386 TECNFLNYRRNVVCFHCECKRPPDE 410
+C+F NY +N+ C C KRP ++
Sbjct: 305 PKCDFYNYTKNMACLKCNTKRPKEQ 231
Score = 55.5 bits (132), Expect = 4e-08
Identities = 23/37 (62%), Positives = 27/37 (72%)
Frame = -3
Query: 348 GDWLCPKCDFMNFAKNNVCLQCDAKRPKRQLLPGEWE 384
GDW CPKCDF N+ KN CL+C+ KRPK Q GE+E
Sbjct: 320 GDWNCPKCDFYNYTKNMACLKCNTKRPKEQ-PSGEYE 213
Score = 54.7 bits (130), Expect = 6e-08
Identities = 21/48 (43%), Positives = 29/48 (59%)
Frame = -3
Query: 355 CDFMNFAKNNVCLQCDAKRPKRQLLPGEWECTECNFLNYRRNVVCFHC 402
C+F N+A N CL+C RPK+ G+W C +C F+N+ NV C C
Sbjct: 497 CEFKNYASNVKCLRCPEPRPKKN--AGDWNCPKCQFMNFASNVKCKRC 360
>AV773398
Length = 496
Score = 47.4 bits (111), Expect = 1e-05
Identities = 19/37 (51%), Positives = 26/37 (69%)
Frame = -1
Query: 348 GDWLCPKCDFMNFAKNNVCLQCDAKRPKRQLLPGEWE 384
GDW CPKCDF ++ +N CL+C KRP ++ GE+E
Sbjct: 319 GDWNCPKCDFYHYTQNMACLKCHTKRP-QEPPSGEYE 212
Score = 46.2 bits (108), Expect(2) = 4e-11
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = -1
Query: 372 KRPKRQLLPGEWECTECNFLNYRRNVVCFHCECKRPPD----EFLEN 414
+ P Q PG+W C +C+F +Y +N+ C C KRP + E+ EN
Sbjct: 346 QHPNPQQYPGDWNCPKCDFYHYTQNMACLKCHTKRPQEPPSGEYEEN 206
Score = 45.8 bits (107), Expect = 3e-05
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = -3
Query: 356 DFMNFAKNNVCLQCDAKRPKRQLLPGEWECTECNFLNYRRNVVCFHC 402
+F N+A++ CL+C RP+ G+W C +C F+N+ NV C C
Sbjct: 494 EFKNYARHVKCLRCPEPRPQPNA--GDWNCPQCPFMNFASNVKCQPC 360
Score = 38.9 bits (89), Expect(2) = 4e-11
Identities = 15/27 (55%), Positives = 16/27 (58%)
Frame = -3
Query: 348 GDWLCPKCDFMNFAKNNVCLQCDAKRP 374
GDW CP+C FMNFA N C C P
Sbjct: 425 GDWNCPQCPFMNFASNVKCQPCLEPNP 345
>TC12667 similar to PIR|D96525|D96525 protein T1N15.19 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(10%)
Length = 498
Score = 48.9 bits (115), Expect(2) = 8e-07
Identities = 24/82 (29%), Positives = 42/82 (50%)
Frame = +1
Query: 125 VHPWPEWIQLMERLVHQNYFDHRRKDEDKMVQDLGFDSSEIVHDEGLDFTKDFKSVHAAC 184
+HPWPEW+ ++RL + YF R + + + ++ KD AC
Sbjct: 310 LHPWPEWVSFIDRLNTKGYFTKPRPSDGTVYVN-------------VNLLKD------AC 432
Query: 185 LNFGKDRFDLLRSLSRQDIQVL 206
L+FG+DR+D+ + L +D+Q +
Sbjct: 433 LSFGRDRYDIFKLLPVEDLQAI 498
Score = 21.6 bits (44), Expect(2) = 8e-07
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = +2
Query: 83 PEQPVSESPPSPPTTTS 99
P P PP PP T S
Sbjct: 263 PPPPKKSHPPPPPPTNS 313
>TC16745 similar to UP|Q94A14 (Q94A14) At2g43170/F14B2.11, partial (21%)
Length = 996
Score = 50.1 bits (118), Expect = 2e-06
Identities = 38/130 (29%), Positives = 56/130 (42%), Gaps = 2/130 (1%)
Frame = +3
Query: 732 RGSQGCNRDRKRFDDFDGSSRRSYGNDRGSQGSNRDRKRFDDFDGSSSRKSYGNDR--GS 789
R NRD+ R++ G R + G+ G + R+ + + R YG +R GS
Sbjct: 630 RQKAASNRDKFRYNAPAGMYRPGSHSSSGAYGERYEDDRYGNRE--EDRNGYGREREWGS 803
Query: 790 QGSNRNRKQFDDFDGSSSRKSYGNDSGSQGSNRGRKRFDDFDGSSRKSYGNDRGSRGNDR 849
+ +RN + D + G + YG D +RGR R D Y D SR +DR
Sbjct: 804 RDDDRNSRDGDRY-GRDYEERYGRDGYRDDDSRGRSRSVD--------YQYDTRSRSSDR 956
Query: 850 SRQKFDDREH 859
R DD +H
Sbjct: 957 DRSYEDDGQH 986
Score = 42.0 bits (97), Expect = 4e-04
Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 2/154 (1%)
Frame = +3
Query: 601 DEQRSLLSKFKSSHVFAADQRRKGRGPTKKLSFGSDSDEDGSAGLYSDEDDDLNEAYSSR 660
D+ ++ K +S V D+ R K S + AG+Y + AY
Sbjct: 552 DQGNNVRKKSQSLVVLVNDKERIIEARQKAASNRDKFRYNAPAGMYRPGSHSSSGAY--- 722
Query: 661 QNKGNRHDSGRRNFTKDGKSGGGYKSNMFGDDFDESPRQSYRNARG-SQGSNRDKKRFDD 719
G R++ R ++ ++G G + D D + R R R + RD R DD
Sbjct: 723 ---GERYEDDRYGNREEDRNGYGREREWGSRDDDRNSRDGDRYGRDYEERYGRDGYRDDD 893
Query: 720 FDGSSRK-SYGNDRGSQGCNRDRKRFDDFDGSSR 752
G SR Y D S+ +RDR DD SSR
Sbjct: 894 SRGRSRSVDYQYDTRSRSSDRDRSYEDDGQHSSR 995
Score = 31.6 bits (70), Expect = 0.58
Identities = 27/101 (26%), Positives = 46/101 (44%), Gaps = 2/101 (1%)
Frame = +3
Query: 787 RGSQGSNRNRKQFDDFDGSSSRKSYGNDSGSQGSNRGRKRFDDFDGSSRKSYGNDR--GS 844
R SNR++ +++ G S+ + SG+ G R+ + + R YG +R GS
Sbjct: 630 RQKAASNRDKFRYNAPAGMYRPGSHSS-SGAYGERYEDDRYGNRE-EDRNGYGREREWGS 803
Query: 845 RGNDRSRQKFDDREHGRGQFNKYSMDEKGGSDFRNSRRVIE 885
R +DR+ + D +GR +Y D D R R ++
Sbjct: 804 RDDDRNSR--DGDRYGRDYEERYGRDGYRDDDSRGRSRSVD 920
>TC11415 similar to PIR|G96696|G96696 protein F1N21.14 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(16%)
Length = 729
Score = 49.3 bits (116), Expect = 3e-06
Identities = 26/84 (30%), Positives = 38/84 (44%), Gaps = 20/84 (23%)
Frame = +1
Query: 341 DDVEMKRG-------DWLCPKCDFMNFAKNNVC--LQCDAKRP-----------KRQLLP 380
DD K+G DW CPKC +NF+ VC +C+ +P K+++
Sbjct: 154 DDKAQKKGADATRDNDWTCPKCGNVNFSFRTVCNMRKCNTPKPGSQASKSDKNSKQKMPE 333
Query: 381 GEWECTECNFLNYRRNVVCFHCEC 404
G W+C +CN +NY C C
Sbjct: 334 GSWKCEKCNNINYPFRTKCNRQNC 405
>TC9861 similar to UP|Q8S8K1 (Q8S8K1) Predicted protein, partial (15%)
Length = 470
Score = 40.8 bits (94), Expect = 0.001
Identities = 26/86 (30%), Positives = 38/86 (43%)
Frame = +2
Query: 308 SVPIDPNLPPPVIKKPPPKVKQPPPTPKRRVGRDDVEMKRGDWLCPKCDFMNFAKNNVCL 367
S+P+ P LPPPV TP +G+ + GDW+C C+ N+A C
Sbjct: 47 SLPMPPLLPPPV------------STPAL-LGKGAKPWRSGDWMCTNCNNHNYASRLHCN 187
Query: 368 QCDAKRPKRQLLPGEWECTECNFLNY 393
+C +R +P C NF +Y
Sbjct: 188 RCKTQRVAP--MPTRPCCVMLNFFSY 259
Score = 31.6 bits (70), Expect = 0.58
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 381 GEWECTECNFLNYRRNVVCFHCECKR 406
G+W CT CN NY + C C+ +R
Sbjct: 128 GDWMCTNCNNHNYASRLHCNRCKTQR 205
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 39.3 bits (90), Expect = 0.003
Identities = 35/150 (23%), Positives = 60/150 (39%), Gaps = 9/150 (6%)
Frame = +2
Query: 630 KLSFGSDSDEDGSAGLYSDEDDDLNEAYSSRQNKGNRHDSGRRNFTKDGKSGGGYKSNMF 689
++S D D+DG DEDDD ++A + + D + G+ GGG +
Sbjct: 14 RMSGDEDDDDDGEDD-DGDEDDD-DDAPGGGDDDDDEEDEEEEGGVEGGRGGGGDPDDDD 187
Query: 690 GDDFDESPRQSYRNARGSQ-------GSNRDKKRFDDFDGSSRKSYGNDR--GSQGCNRD 740
DD D+ + G++ + D++ DF+ + ND G +
Sbjct: 188 DDDDDDDEEEEEEEDLGTEYLVRRTVAAAEDEEASSDFEPEEDEGDDNDNDDGEKAGVPS 367
Query: 741 RKRFDDFDGSSRRSYGNDRGSQGSNRDRKR 770
+++ D DGS +D G + R KR
Sbjct: 368 KRKRSDKDGSG--DDDSDDGGEDDERPSKR 451
Score = 31.2 bits (69), Expect = 0.76
Identities = 39/147 (26%), Positives = 58/147 (38%), Gaps = 3/147 (2%)
Frame = +2
Query: 461 DSHGIDKDFFSDNNARRVGWEDDFAKNRSVPGSHDDEYVNAGPGPSRPRTGFDDFEDEDD 520
D G D D D++ G DD +DE G R G D +D+DD
Sbjct: 38 DDDGEDDDGDEDDDDDAPGGGDD-------DDDEEDEEEEGGVEGGRGGGGDPDDDDDDD 196
Query: 521 IDSYELETE---TGTSVSRMEATKTNFSETEDSLDWEDSEDIDDKMHAHNKSKTASGRTE 577
D E E E GT + T + E S D+E ED D + ++ + A ++
Sbjct: 197 DDDDEEEEEEEDLGTEY-LVRRTVAAAEDEEASSDFEPEEDEGDD-NDNDDGEKAGVPSK 370
Query: 578 RTRSVRKNTSFSRSKEDELDYDSDEQR 604
R RS + + +D D D++R
Sbjct: 371 RKRSDKDGS----GDDDSDDGGEDDER 439
Score = 28.5 bits (62), Expect = 4.9
Identities = 21/87 (24%), Positives = 33/87 (37%)
Frame = -2
Query: 28 FSTSQNPNPKPSSLSARLSFVFDQIDAIEKERSQKHETLQRIRAWRDSKNTHNQIPEQPV 87
FS S PSS S S A R ++ + + S ++ +
Sbjct: 351 FSPSSLSLSSPSSSSGSKSLDASSSSAAATVRRTRYSVPKSSSSSSSSSSSSSSSSSSSG 172
Query: 88 SESPPSPPTTTSSSLNEESDTNINSKP 114
S PP PP+T SS + S ++ + P
Sbjct: 171 SPPPPRPPSTPPSSSSSSSSSSSSPPP 91
>AV427209
Length = 354
Score = 38.9 bits (89), Expect = 0.004
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 15/104 (14%)
Frame = +2
Query: 319 VIKKPPPKVKQPPPTPKRRVG--------RDDVEMKRGDWLCPKCDFMN-FAKNNVCLQC 369
++ PP + P ++G R + W C KC F+N ++ + C C
Sbjct: 14 LVPSPPSLILNPRNIQTYQIGTFLLHHTPRSSPIISMSSWSCIKCTFLNPPSQKSQCQIC 193
Query: 370 DAKRP------KRQLLPGEWECTECNFLNYRRNVVCFHCECKRP 407
+ P P +W C C LN +N C C + P
Sbjct: 194 SSSPPPSPPPSSSSSSPPKWSCKACTLLNPYKNSTCELCGTRSP 325
>AV779188
Length = 350
Score = 38.1 bits (87), Expect = 0.006
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 4/127 (3%)
Frame = +3
Query: 90 SPPSPPTTTS----SSLNEESDTNINSKPVELVKKEVEFVHPWPEWIQLMERLVHQNYFD 145
SP SP T +S +++ ++++++P + HPWPE + + + Y
Sbjct: 3 SPSSPSLTPKLKPKASQHQQQQSHLHTQPPSSLT-----THPWPECSRFLSHISSVGYAT 167
Query: 146 HRRKDEDKMVQDLGFDSSEIVHDEGLDFTKDFKSVHAACLNFGKDRFDLLRSLSRQDIQV 205
+ GF +S + +ACL F +DR +LLR LS +D+ V
Sbjct: 168 --------TAPETGFPASGE*SQREV----------SACLAFARDRPNLLRLLSMRDMAV 293
Query: 206 LVGFGCP 212
+V G P
Sbjct: 294 VVEHGTP 314
>TC12355 similar to UP|PR18_HUMAN (Q99633) Pre-mRNA splicing factor 18
(PRP18 homolog) (hPRP18), partial (8%)
Length = 563
Score = 36.2 bits (82), Expect = 0.023
Identities = 30/94 (31%), Positives = 41/94 (42%), Gaps = 4/94 (4%)
Frame = +1
Query: 17 NPKTPFFHSHHFSTSQNPNPKPSSLSARLSFVFDQIDAIEKERSQKHETLQRIRAWRDSK 76
NP+ F S FS +N NP P +AR S + ++ +R W+ +
Sbjct: 55 NPR*WIF*SRSFS--KNANPLPKKPAARNSSSAPR----SNRNKSRNSANKRSANWKPNL 216
Query: 77 NTHNQIPEQPVSESPPSPPT----TTSSSLNEES 106
P P PP PPT TTSSSLN++S
Sbjct: 217 *NAPPPPPPPPPTPPPHPPTSRTSTTSSSLNKKS 318
>AV418628
Length = 309
Score = 36.2 bits (82), Expect = 0.023
Identities = 35/122 (28%), Positives = 47/122 (37%), Gaps = 1/122 (0%)
Frame = +2
Query: 714 KKRFDDFDGSSRKSYGNDRGSQGCNRDRKRFDDFDGSSRRSYGNDRGSQGSNRDRKRFDD 773
KK D S S G+D G R K+ +G ++ K+ D
Sbjct: 8 KKSSDSDSSSDSSSSGSDSDRPGVVRSGKK------------------KGGSKKSKKSSD 133
Query: 774 FDGSSSRKSYGNDRGSQGSNRNRKQFDDFDGSSSRKSYGNDSGSQGSNR-GRKRFDDFDG 832
D SS S G+D G R + D+ SSS G+DS G R G K+ + D
Sbjct: 134 SDSSSDSSSSGSDSDRPGVVRTGAKKDESSDSSS----GSDSDRPGVVRTGAKKDESSDS 301
Query: 833 SS 834
SS
Sbjct: 302 SS 307
>AV408095
Length = 318
Score = 35.8 bits (81), Expect = 0.031
Identities = 18/54 (33%), Positives = 25/54 (45%), Gaps = 1/54 (1%)
Frame = +2
Query: 303 VVKLSSVPIDPNLPPPVIKKPPPKVKQPPPTPKRRVGRDDVEMK-RGDWLCPKC 355
V+++ +P+DP PP K PK PP P V +K + DW P C
Sbjct: 143 VIRMMEMPVDPLEPPKFKHKRVPKASGSPPVPVMHSPSRPVTVKDQQDWKIPPC 304
>CN825698
Length = 704
Score = 33.9 bits (76), Expect = 0.12
Identities = 18/42 (42%), Positives = 21/42 (49%), Gaps = 1/42 (2%)
Frame = +1
Query: 307 SSVPIDPNLPPPVIKKPPPKVKQ-PPPTPKRRVGRDDVEMKR 347
+S P P PPP PPP PPP +RR RDD + R
Sbjct: 124 ASAPPPPPPPPPPPSLPPPSDSDLPPPPARRRDRRDDRDFDR 249
>TC14326 weakly similar to UP|EXLP_TOBAC (Q03211) Pistil-specific
extensin-like protein precursor (PELP), partial (11%)
Length = 630
Score = 33.5 bits (75), Expect = 0.15
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +2
Query: 285 PLLKQKSVKAVVRKLLHEVVKLSSVPIDPNLPPPVIKKPPPKVKQPPPTP 334
P++K VKA + V P PPPV PP+VK PPP P
Sbjct: 410 PIVKSPPVKAPTPPI---------VKSPPYYPPPVKAPTPPQVKTPPPHP 532
Score = 30.8 bits (68), Expect = 0.99
Identities = 19/37 (51%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Frame = +2
Query: 304 VKLSSVPI---DPNLPPPVIKKPPPKVKQPP---PTP 334
VK S PI P PPPV PP VK PP PTP
Sbjct: 245 VKAPSPPIVKSPPYFPPPVKAPSPPIVKSPPVKAPTP 355
Score = 30.8 bits (68), Expect = 0.99
Identities = 20/53 (37%), Positives = 24/53 (44%), Gaps = 3/53 (5%)
Frame = +2
Query: 285 PLLKQKSVKAVVRKLLHEVVKLSSVPIDPNLPPPVIKKPPPKVKQPP---PTP 334
P++K VKA + V P+ PPPV PP VK PP PTP
Sbjct: 317 PIVKSPPVKAPTPPI---------VKSPPSYPPPVKAPSPPIVKSPPVKAPTP 448
>TC8089 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan
protein 1 precursor, partial (43%)
Length = 890
Score = 33.5 bits (75), Expect = 0.15
Identities = 24/85 (28%), Positives = 38/85 (44%)
Frame = +2
Query: 15 LLNPKTPFFHSHHFSTSQNPNPKPSSLSARLSFVFDQIDAIEKERSQKHETLQRIRAWRD 74
LL P +P + +HH S+ +P+ S SAR + + +T A+
Sbjct: 74 LLPPLSPLYFTHHTSSPTQISPRQCSCSARQPWRLSRQRCSSSPWLLPPQTPTTSPAF-- 247
Query: 75 SKNTHNQIPEQPVSESPPSPPTTTS 99
S +T + P S SP SPP +T+
Sbjct: 248 SPSTPSSPPSTTTSPSPTSPPRSTN 322
>TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%)
Length = 1751
Score = 28.1 bits (61), Expect(2) = 0.19
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +1
Query: 31 SQNPNPKPSSLSARLSFVFD 50
SQNPNPKPSSL L F+
Sbjct: 52 SQNPNPKPSSLLHSLPLHFN 111
Score = 23.5 bits (49), Expect(2) = 0.19
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 83 PEQPVSESPPSPPTTTSSS 101
P QP PPSPP+ +S++
Sbjct: 102 PLQPPPPLPPSPPSLSSAA 158
>TC7888 similar to UP|Q40336 (Q40336) Proline-rich cell wall protein,
partial (60%)
Length = 913
Score = 33.1 bits (74), Expect = 0.20
Identities = 18/38 (47%), Positives = 21/38 (54%), Gaps = 5/38 (13%)
Frame = +3
Query: 303 VVKLSSVPIDPNLPPPVIKKP-----PPKVKQPPPTPK 335
+VK VP P++P P I KP PP VK PP PK
Sbjct: 432 IVKPPYVPKPPHVPKPPIVKPPYVPKPPVVKPPPYVPK 545
Score = 31.2 bits (69), Expect = 0.76
Identities = 16/37 (43%), Positives = 20/37 (53%), Gaps = 4/37 (10%)
Frame = +3
Query: 303 VVKLSSVPIDPNLPPPVIKKPP----PKVKQPPPTPK 335
VVK VP P + PP + KPP P + +PP PK
Sbjct: 399 VVKPPHVPKPPIVKPPYVPKPPHVPKPPIVKPPYVPK 509
Score = 31.2 bits (69), Expect = 0.76
Identities = 17/37 (45%), Positives = 20/37 (53%), Gaps = 4/37 (10%)
Frame = +3
Query: 303 VVKLSSVPIDPNLPPPVIKKP----PPKVKQPPPTPK 335
VVK VP P + PP + KP PP V +PP PK
Sbjct: 366 VVKPPHVPKPPVVKPPHVPKPPIVKPPYVPKPPHVPK 476
>AV427911
Length = 348
Score = 33.1 bits (74), Expect = 0.20
Identities = 14/23 (60%), Positives = 15/23 (64%), Gaps = 2/23 (8%)
Frame = +1
Query: 316 PPPVIKKPPPK--VKQPPPTPKR 336
PPPV PPPK K PPP PK+
Sbjct: 148 PPPVYSPPPPKYYYKSPPPPPKK 216
Score = 30.4 bits (67), Expect = 1.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 313 PNLPPPVIKKPPPKVKQPPPTPKR 336
P+ PPPV P P PPP PK+
Sbjct: 229 PSPPPPVHVYPKPTYHSPPPPPKK 300
>TC16032 similar to BAC87886 (BAC87886) PGL-3, partial (4%)
Length = 631
Score = 33.1 bits (74), Expect = 0.20
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Frame = +3
Query: 697 PRQSYRNARGSQGSNRDKKRFDDFDGSSRKSYGNDRGSQGCN-----RDRKRFDDFDGS- 750
PR+ Y+N RG +G G R+ Y N RG G R ++ D G+
Sbjct: 186 PRRGYQNQRGGRG------------GGGRRGYSNGRGRGGSRGGYYPNGRNQYADQPGNY 329
Query: 751 -SRRSYGN----DRGSQGSN 765
R +Y N RGS G+N
Sbjct: 330 YPRNNYNNRGRGGRGSYGNN 389
>TC13338 similar to UP|Q9ZTZ4 (Q9ZTZ4) IFA-binding protein, partial (12%)
Length = 530
Score = 33.1 bits (74), Expect = 0.20
Identities = 33/159 (20%), Positives = 63/159 (38%), Gaps = 10/159 (6%)
Frame = +1
Query: 524 YELETETGTSVSRMEATKTNFSETEDSLDWEDSEDIDD-KMHAHNKSKTASGRTERTRSV 582
+E E +SR + + + S ++ED D+ + +++SK +G S
Sbjct: 55 HEYEVREKMMMSRRDGSNNSMRSRTSSPSCSNAEDSDELSLDLNHESKEENGSYSHQESS 234
Query: 583 RKNTSFSRSK--EDELDYDSDEQRSLLSKFKSSHVFAADQRRKGRGPTKKLSFGSDSD-- 638
+NT + E+ L +E+ S+L + K +++ ++ SF D
Sbjct: 235 NQNTPVDAALYLEESLANFEEERLSILEQLK-----LLEEKLVILSYEEEHSFEFDDTNS 399
Query: 639 -----EDGSAGLYSDEDDDLNEAYSSRQNKGNRHDSGRR 672
E+ G + D DDD + N +H GR+
Sbjct: 400 NEHLCEENGNGYHHDHDDDHKGHVNGFANGNGKHHQGRK 516
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.314 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,322,270
Number of Sequences: 28460
Number of extensions: 256995
Number of successful extensions: 3516
Number of sequences better than 10.0: 169
Number of HSP's better than 10.0 without gapping: 2315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3177
length of query: 886
length of database: 4,897,600
effective HSP length: 98
effective length of query: 788
effective length of database: 2,108,520
effective search space: 1661513760
effective search space used: 1661513760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Medicago: description of AC146571.8