BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146571.2 - phase: 0
(527 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11293 homologue to UP|Q8H9B2 (Q8H9B2) T-complex polypeptide 1,... 146 9e-36
TC17344 homologue to GB|AAM26704.1|20857172|AY102137 AT3g11830/F... 120 5e-28
TC18963 homologue to UP|CAE47772 (CAE47772) Cytosolic chaperonin... 104 4e-23
AV408141 102 2e-22
AV428658 77 5e-15
TC11703 homologue to UP|Q9ZSQ6 (Q9ZSQ6) T-complex protein 1 epsi... 73 1e-13
TC9835 similar to AAQ56831 (AAQ56831) At3g03960, partial (67%) 69 1e-12
TC10760 similar to UP|Q9ZSQ6 (Q9ZSQ6) T-complex protein 1 epsilo... 69 2e-12
TC17263 homologue to UP|RUBB_PEA (P08927) RuBisCO subunit bindin... 67 6e-12
TC8373 homologue to UP|RUBA_PEA (P08926) RuBisCO subunit binding... 60 9e-10
TC16036 homologue to GB|BAB02032.1|9294075|AB020749 cytosolic ch... 57 6e-09
TC17461 similar to UP|Q8L7N0 (Q8L7N0) TCP-1 chaperonin-like prot... 51 4e-07
TC16943 similar to UP|O81503 (O81503) F9D12.18 protein, partial ... 49 2e-06
AV412826 35 0.023
TC14056 homologue to UP|P93769 (P93769) Elongation factor-1 alph... 30 0.97
TC20203 homologue to UP|Q9ZRX1 (Q9ZRX1) Cytosolic chaperonin, de... 29 2.2
TC8486 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {Ara... 27 6.3
TC15402 UP|CAE45587 (CAE45587) Vacuolar proton-ATPase subunit-li... 27 6.3
TC8522 similar to UP|AAR23736 (AAR23736) At5g46870, partial (76%) 27 6.3
TC9209 homologue to UP|Q7X9M5 (Q7X9M5) ATP-dependent Clp proteas... 27 8.2
>TC11293 homologue to UP|Q8H9B2 (Q8H9B2) T-complex polypeptide 1, partial
(32%)
Length = 591
Score = 146 bits (368), Expect = 9e-36
Identities = 80/171 (46%), Positives = 119/171 (68%), Gaps = 4/171 (2%)
Frame = +3
Query: 14 EKGERARMSSFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHID 72
+ G+ R + V A+A++VKT+LGP G+DK+L G +VT+TNDGATIL+ L ++
Sbjct: 102 QSGQDVRTQNVVACQAVANIVKTSLGPVGLDKMLVDDIG---DVTITNDGATILRMLEVE 272
Query: 73 NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIIAGFRMAAECA 132
+PAAKVLV+++++QD EVGDGTTSVV++A ELL+ A LV KIHP +II+G+R+A A
Sbjct: 273 HPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREA 452
Query: 133 RSALVEKV---VDNKGDAEKFRSDLMNIARTTLSSKILSQDKEHFAKLAVD 180
+ EK+ VD G + L+N A+T++SSK+++ D + FA + VD
Sbjct: 453 CKYIDEKLAVKVDKLG-----KDSLVNCAKTSMSSKLIAGDSDFFANMVVD 590
>TC17344 homologue to GB|AAM26704.1|20857172|AY102137 AT3g11830/F26K24_12
{Arabidopsis thaliana;}, partial (28%)
Length = 567
Score = 120 bits (301), Expect = 5e-28
Identities = 63/150 (42%), Positives = 98/150 (65%)
Frame = +1
Query: 6 IFKDEASEEKGERARMSSFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATI 65
+ K+ +G+ +S+ A+AD+V+TTLGP+GMDK++ +G VT++NDGATI
Sbjct: 124 LLKEGTDTSQGKAQLVSNINACTAVADVVRTTLGPRGMDKLIHDD-KG-SVTISNDGATI 297
Query: 66 LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIIAGF 125
+K L I +PAAK+LVDI+K QD EVGDGTT+VV+LA E LREA+ + +HP +I +
Sbjct: 298 MKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSY 477
Query: 126 RMAAECARSALVEKVVDNKGDAEKFRSDLM 155
R A+ A + + + +G + + + L+
Sbjct: 478 RTASTLAIQKVKDLALSMEGKSLEEKKSLL 567
>TC18963 homologue to UP|CAE47772 (CAE47772) Cytosolic chaperonin
delta-subunit, partial (41%)
Length = 652
Score = 104 bits (259), Expect = 4e-23
Identities = 64/200 (32%), Positives = 108/200 (54%), Gaps = 6/200 (3%)
Frame = +1
Query: 253 VDSMAKVAEIEGAEKEKMKEKVNKIIGHGINCF-----VNRQLIYNFPEELFADAGILAI 307
V +++ I E+ + + KI G N + R + + A A IL I
Sbjct: 52 VSDYSQMDRILKEERSYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVI 231
Query: 308 EHADFDGIERLALVTGGEIASTFDNPESVKLGQCELIEEIMIGEDKLIKFSGVA-MGQAC 366
+ + D IE + + ++ + KLG +L+EE+ +G+ K++K SG+ MG+
Sbjct: 232 KDVERDEIEFITKTLNCLPIANIEHFRAEKLGYADLVEEVSLGDGKIVKISGIKDMGRTT 411
Query: 367 TIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLLGGGWPEMVMAKEIDALARKTPGK 426
T+++RG++ VLDEAERSLHDALCV+ V ++ GGG PE+ +++++ A A+ G
Sbjct: 412 TVLVRGSNQLVLDEAERSLHDALCVVRCLVAKRFLIAGGGAPEIELSRQLGAWAKVLHGM 591
Query: 427 KSLAMEAFSRALLAIPTTIA 446
+ + AF+ AL IP T+A
Sbjct: 592 EGYCVRAFAEALEVIPYTLA 651
>AV408141
Length = 427
Score = 102 bits (253), Expect = 2e-22
Identities = 52/108 (48%), Positives = 76/108 (70%)
Frame = +1
Query: 14 EKGERARMSSFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDN 73
++ E R ++ V A ++A+ V+T+LGPKGMDK++ ++ EV +TNDGATIL + +
Sbjct: 79 KRKEDIRHANIVAARSVANAVRTSLGPKGMDKMISTSSD--EVIITNDGATILNKMQVLQ 252
Query: 74 PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTI 121
PAAK+LV++SK QD GDGTT+VVV+AG LL + L++ IHP I
Sbjct: 253 PAAKMLVELSKSQDSAAGDGTTTVVVIAGALLEQCLLLLSRGIHPTVI 396
>AV428658
Length = 392
Score = 77.4 bits (189), Expect = 5e-15
Identities = 37/85 (43%), Positives = 61/85 (71%)
Frame = +3
Query: 8 KDEASEEKGERARMSSFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILK 67
+++ S +G A+ ++ A+A +++T+LGPKGMDK+LQS +VT+TNDGATIL+
Sbjct: 144 QEQKSRLRGLDAQKANIFAGKAVARILRTSLGPKGMDKMLQSPDG--DVTITNDGATILE 317
Query: 68 SLHIDNPAAKVLVDISKVQDDEVGD 92
+ +DN AK++V++S+ D E+GD
Sbjct: 318 QMDVDNQIAKLMVELSRSHDYEIGD 392
>TC11703 homologue to UP|Q9ZSQ6 (Q9ZSQ6) T-complex protein 1 epsilon subunit
(Fragment), partial (53%)
Length = 665
Score = 73.2 bits (178), Expect = 1e-13
Identities = 57/222 (25%), Positives = 106/222 (47%), Gaps = 7/222 (3%)
Frame = +1
Query: 166 ILSQDKEHFAKLAVDAVMRL----KGSTNLESVQIIKKPGGSLIDSFLDEGFILDKKIGL 221
I+++ K A++AV+AV+ + + NL+ +++ K GG L D+ L G ++DK +
Sbjct: 1 IVNRCKRSLAEIAVNAVVAVADLERKDVNLDLIKVEGKVGGKLEDTELIYGIVVDKDMSH 180
Query: 222 GQ-PKRIENAKILVANTAMDTDKVKIYGARVRVDSMAKVAEIEGAEKEKMKEKVNKIIGH 280
Q PK+IE+AKI + + K K +V +D++ K + E + + V +
Sbjct: 181 PQMPKQIEDAKIAILTCPFEPPKPKTKH-KVDIDTVEKFQTLRKQEVKYFDDMVQQCKDA 357
Query: 281 GINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGQ 340
G + + + L + A+ +E +A+ TGG I F KLG+
Sbjct: 358 GATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGK 537
Query: 341 CELIEEIMIG--EDKLIKFSGVAMGQACTIVLRGASHHVLDE 380
L+ E G +D+++ A +A TI +RG + +++E
Sbjct: 538 AGLVREKAFGTTKDRMLYIEHCANSRAVTIFIRGGNKMIIEE 663
>TC9835 similar to AAQ56831 (AAQ56831) At3g03960, partial (67%)
Length = 1126
Score = 69.3 bits (168), Expect = 1e-12
Identities = 34/80 (42%), Positives = 53/80 (65%)
Frame = +3
Query: 33 LVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGD 92
+ +T+LGP GM+K++ ++ VTND ATI+ L + +PAAK+LV K Q +++GD
Sbjct: 69 ITRTSLGPNGMNKMV--INHLDKLFVTNDAATIVNELEVQHPAAKILVLAGKAQQEDIGD 242
Query: 93 GTTSVVVLAGELLREAEKLV 112
G + AGELL+ AE+L+
Sbjct: 243 GANLTISFAGELLQGAEELI 302
Score = 68.9 bits (167), Expect = 2e-12
Identities = 67/301 (22%), Positives = 127/301 (41%), Gaps = 7/301 (2%)
Frame = +1
Query: 90 VGDGTTSVVVLAGELLREAEKLVAAKIHPMTIIAGFRMAAECARSALVEKVVDNKGDAEK 149
+G G + L G R L +HP II+G+ A +++ +V+ ++
Sbjct: 235 LGTGRI*LFHLPGSCCRALRSLSGMGLHPSEIISGYTKAI-AKTIEILD*LVEKGSESMD 411
Query: 150 FRSDLMNIAR--TTLSSKILSQDKEHFAKLAVDAVMRL----KGSTNLESVQIIKKPGGS 203
R + I+R ++SK Q+ + L DA +++ + N+++V++ K GG
Sbjct: 412 VRDKVQVISRMRAAVASKQFGQE-DTICSLVADACIQVCPKNPANFNVDNVRVAKLLGGG 588
Query: 204 LIDSFLDEGFILDKKIGLGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMAKVAEIE 263
L +S + G +L K +G KRIE AK+ V + +DT G V + S ++
Sbjct: 589 LHNSTVVRGMVL-KSDAVGSIKRIEKAKVAVFVSGVDTSATDTKGT-VLIHSAEQLENYS 762
Query: 264 GAEKEKMKEKVNKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTG 323
E+ K++E + + G V+ + ++ ++ + + R TG
Sbjct: 763 KTEEAKVEELIKAVADSGAKVIVSGGAVGEMALHFCERYKLMVLKISSKFELRRFCRTTG 942
Query: 324 GEIASTFDNPESVKLGQCELIEEIMIGEDKLIKFSGVAMGQAC-TIVLRGASHHVLDEAE 382
P LG + + +G + G + T+VLRG++ +LD+ E
Sbjct: 943 AVAVLKLSQPNPDDLGYVDSVSVEEVGGVTVTIVKNEEGGNSVSTVVLRGSTDSILDDLE 1122
Query: 383 R 383
R
Sbjct: 1123R 1125
>TC10760 similar to UP|Q9ZSQ6 (Q9ZSQ6) T-complex protein 1 epsilon subunit
(Fragment), partial (28%)
Length = 539
Score = 68.9 bits (167), Expect = 2e-12
Identities = 38/115 (33%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Frame = +1
Query: 404 GGGWPEMVMAKEIDALARKTPGKKSLAMEAFSRALLAIPTTIADNAGLDSAELISQLRAE 463
GGG E+ + ++A A + PG + A+ AF+ AL +P +A+N+GL E +S ++++
Sbjct: 1 GGGSAEISCSVAVEAAADRFPGVEQYAIRAFADALEYVPMALAENSGLQPIETLSAVKSQ 180
Query: 464 H-QNEGCTAGIDVISGSVGDMVERGICEAFKVKQAVLLSATEAAEMILRVDDIIT 517
++ GID DM E+ + E KQ +L AT+ +MIL++DD+I+
Sbjct: 181 QIKDNNPHYGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 345
>TC17263 homologue to UP|RUBB_PEA (P08927) RuBisCO subunit binding-protein
beta subunit, chloroplast precursor (60 kDa chaperonin
beta subunit) (CPN-60 beta), partial (28%)
Length = 622
Score = 67.4 bits (163), Expect = 6e-12
Identities = 40/103 (38%), Positives = 60/103 (57%), Gaps = 4/103 (3%)
Frame = +2
Query: 26 GAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPA----AKVLVD 81
G +ADLV TLGPKG + +L+S + + NDG T+ K + +++P AK++
Sbjct: 293 GVNKLADLVGVTLGPKGRNVVLES--KYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 466
Query: 82 ISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIIAG 124
+ +D GDGTT+ VVLA L+ E K+VAA +P+ I G
Sbjct: 467 AAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 595
>TC8373 homologue to UP|RUBA_PEA (P08926) RuBisCO subunit binding-protein
alpha subunit, chloroplast precursor (60 kDa chaperonin
alpha subunit) (CPN-60 alpha), partial (97%)
Length = 2053
Score = 60.1 bits (144), Expect = 9e-10
Identities = 46/178 (25%), Positives = 87/178 (48%), Gaps = 6/178 (3%)
Frame = +3
Query: 17 ERARMSSFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHI----D 72
+ +R + G +AD V TLGP+G + +L G + V NDG TI +++ + +
Sbjct: 240 QHSRRALQAGIDKLADAVGLTLGPRGRNVVLDEFGSPK---VVNDGVTIARAIELPDAME 410
Query: 73 NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIIAGFRMAAECA 132
N A ++ +++ +D GDGTT+ VLA E+++ V + +P+++ G
Sbjct: 411 NAGAALIREVASRTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTV--- 581
Query: 133 RSALVEKVVDNKGDAEKFRSDLMNIARTTLSSKIL--SQDKEHFAKLAVDAVMRLKGS 188
+AL+E+ ++ K K D+ +A + + L E K+ D V+ ++ S
Sbjct: 582 -AALIEE-LEKKARPVKGGDDIKAVASISAGNDELIGHMIAEAIGKVGPDGVLSIESS 749
>TC16036 homologue to GB|BAB02032.1|9294075|AB020749 cytosolic chaperonin,
delta-subunit {Arabidopsis thaliana;} , partial (14%)
Length = 575
Score = 57.4 bits (137), Expect = 6e-09
Identities = 27/80 (33%), Positives = 46/80 (56%)
Frame = +2
Query: 444 TIADNAGLDSAELISQLRAEHQNEGCTAGIDVISGSVGDMVERGICEAFKVKQAVLLSAT 503
T+A+NAGL+ ++++LR H GI+V G + +++E + + V + + AT
Sbjct: 2 TLAENAGLNPIAIVTELRNRHAQGEINTGINVRKGQITNILEENVVQPLLVSTSAITLAT 181
Query: 504 EAAEMILRVDDIITCAPRRR 523
E MIL++DDI+T R R
Sbjct: 182 ECVRMILKIDDIVTVR*RLR 241
>TC17461 similar to UP|Q8L7N0 (Q8L7N0) TCP-1 chaperonin-like protein
(At5g16070), partial (17%)
Length = 606
Score = 51.2 bits (121), Expect = 4e-07
Identities = 29/88 (32%), Positives = 48/88 (53%)
Frame = +3
Query: 437 ALLAIPTTIADNAGLDSAELISQLRAEHQNEGCTAGIDVISGSVGDMVERGICEAFKVKQ 496
ALL +P T+A+N+GLD+ ++I L EH + G G+ +G D GI + + VK+
Sbjct: 9 ALLVVPKTLAENSGLDTQDVIISLTGEH-DRGNVVGLCQNTGEPIDPQMEGIFDHYAVKR 185
Query: 497 AVLLSATEAAEMILRVDDIITCAPRRRE 524
++ S A +L VD++I R+
Sbjct: 186 QIINSGPVIASQLLLVDEVIRAGRNMRK 269
>TC16943 similar to UP|O81503 (O81503) F9D12.18 protein, partial (18%)
Length = 624
Score = 48.9 bits (115), Expect = 2e-06
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +2
Query: 450 GLDSAELISQLRAEHQN-EGCTAGIDVISGSVGDMVERGICEAFKVKQAVLLSATEAAEM 508
G++ ++ L+ H N E GID +G++ DM ER I +A+ VK +A EAA M
Sbjct: 5 GVNVIXTMTALQGTHANGENAWIGIDGNTGALADMKERKIWDAYNVKAPTFKTALEAACM 184
Query: 509 ILRVDDIIT 517
+LR+DDI++
Sbjct: 185 LLRIDDIVS 211
>AV412826
Length = 322
Score = 35.4 bits (80), Expect = 0.023
Identities = 21/81 (25%), Positives = 41/81 (49%)
Frame = +1
Query: 436 RALLAIPTTIADNAGLDSAELISQLRAEHQNEGCTAGIDVISGSVGDMVERGICEAFKVK 495
+ALL +IA NAG+D ++ ++R G + ++G+ D++ G+ + +V
Sbjct: 67 QALLEPAKSIATNAGVDGDVVVQKIRIFDWR----IGYNAMTGTYEDLLNAGVADPSRVA 234
Query: 496 QAVLLSATEAAEMILRVDDII 516
+ L SA A ++L I+
Sbjct: 235 RCALQSAVSVAGVVLTTQAIL 297
>TC14056 homologue to UP|P93769 (P93769) Elongation factor-1 alpha, complete
Length = 1897
Score = 30.0 bits (66), Expect = 0.97
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = -2
Query: 340 QCELIEEIMIGEDKLIKFSGVAMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDS 399
QC L ++G S + T+ LR +S+HVLD+ +S+++ND
Sbjct: 522 QCVLTSLSILGNTSFETTSCGINDKDSTVSLRSSSNHVLDKV---------TMSRSINDC 370
Query: 400 RVLLGG 405
V+ GG
Sbjct: 369 AVVFGG 352
>TC20203 homologue to UP|Q9ZRX1 (Q9ZRX1) Cytosolic chaperonin,
delta-subunit, partial (10%)
Length = 522
Score = 28.9 bits (63), Expect = 2.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 489 CEAFKVKQAVLLSATEAAEMILRVDDIIT 517
C V + + ATE MIL++DDI+T
Sbjct: 88 CSRCLVSTSAITLATECVRMILKIDDIVT 174
>TC8486 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {Arabidopsis
thaliana;}, partial (25%)
Length = 856
Score = 27.3 bits (59), Expect = 6.3
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 90 VGDGTTSVVVLAGELLREAEKL 111
VGDG V +LAGEL+ E E L
Sbjct: 378 VGDGDEGVEILAGELVLEGELL 313
>TC15402 UP|CAE45587 (CAE45587) Vacuolar proton-ATPase subunit-like protein,
complete
Length = 2423
Score = 27.3 bits (59), Expect = 6.3
Identities = 21/69 (30%), Positives = 32/69 (45%), Gaps = 1/69 (1%)
Frame = +1
Query: 367 TIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLLGGGWPEMVMAKEI-DALARKTPG 425
TI ++ ++L E+S+H L +LS V + L+ GW + K+I DAL R
Sbjct: 898 TIGVQFEQWNLLVRKEKSIHHTLNMLSLDVT-KKCLVAEGWSPVFATKQIQDALQRAAVD 1074
Query: 426 KKSLAMEAF 434
S F
Sbjct: 1075SNSQVSAIF 1101
>TC8522 similar to UP|AAR23736 (AAR23736) At5g46870, partial (76%)
Length = 1069
Score = 27.3 bits (59), Expect = 6.3
Identities = 48/232 (20%), Positives = 91/232 (38%), Gaps = 6/232 (2%)
Frame = +1
Query: 52 RGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAG--ELLREAE 109
+G E V GATI +D P + L +V + T +G LR+AE
Sbjct: 217 QGAETAVLLSGATI-----VDLPVSIALDPDYQVPPAALASSETEGKGPSGPESALRKAE 381
Query: 110 KLVAAKIHPMTIIAGFRMAAECARSALVEKVVDNKGDAEKFRSDLMNIARTTLSSKILSQ 169
+V + + GF + + A K +D K +T S+K+ S
Sbjct: 382 DVVTSML-----AKGFILGKDAVNKA---KTLDEKHQLS-----------STASAKVSSI 504
Query: 170 DKEHFAKLAVDAVMRLKGSTNLESVQIIKKPGGSLIDSFLDEGFILDKKIGLGQPKR--- 226
D+ +L + + + + G S++ + E +D+K + + +
Sbjct: 505 DQ------------KLGLTEKISAGASVVSAGASVVTDRVRE---VDQKFQVSEKTKSAF 639
Query: 227 -IENAKILVANTAMDTDKVKIYGARVRVDSMAKVAEIEGAEKEKMKEKVNKI 277
+ K+ A +A+ ++ + GA + +KVA+ G +K KEK+ +
Sbjct: 640 AVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSKVAKAAGDVGQKTKEKLESV 795
>TC9209 homologue to UP|Q7X9M5 (Q7X9M5) ATP-dependent Clp protease
proteolytic subunit (Fragment), complete
Length = 595
Score = 26.9 bits (58), Expect = 8.2
Identities = 14/48 (29%), Positives = 24/48 (49%)
Frame = -1
Query: 117 HPMTIIAGFRMAAECARSALVEKVVDNKGDAEKFRSDLMNIARTTLSS 164
HP ++ C S L+EKV+ D++KF ++++ T SS
Sbjct: 265 HPAQVLGNLLNRLACFGSQLIEKVI---SDSKKFICFILDVISLTTSS 131
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.134 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,172,047
Number of Sequences: 28460
Number of extensions: 62072
Number of successful extensions: 288
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of query: 527
length of database: 4,897,600
effective HSP length: 94
effective length of query: 433
effective length of database: 2,222,360
effective search space: 962281880
effective search space used: 962281880
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC146571.2