BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146571.1 - phase: 0
(713 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19057 similar to UP|Q93X45 (Q93X45) Xaa-Pro aminopeptidase 2 ... 183 7e-47
TC17483 similar to UP|O23206 (O23206) Aminopeptidase-like protei... 105 3e-23
BF177624 35 0.054
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 32 0.46
TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%) 31 0.78
BP033791 30 1.0
TC14556 homologue to UP|Q9ZTW5 (Q9ZTW5) GDP-mannose pyrophosphor... 29 3.0
TC19264 homologue to UP|O24293 (O24293) Chloroplast inner envelo... 28 3.9
TC15443 28 3.9
TC12777 similar to UP|Q9SYP6 (Q9SYP6) F9H16.10 protein, partial ... 28 5.1
AV776280 28 5.1
TC11303 homologue to UP|O82651 (O82651) Squamosa-promoter bindin... 28 5.1
TC8094 homologue to UP|EFTU_PEA (O24310) Elongation factor Tu, c... 28 5.1
TC14285 similar to UP|Q9AXU5 (Q9AXU5) Pathogen-inducible alpha-d... 28 6.6
TC16067 UP|Q9ZRY4 (Q9ZRY4) NDX1 homeobox protein, complete 28 6.6
AV408141 27 8.6
TC14439 similar to UP|Q9FIC1 (Q9FIC1) Gb|AAF19567.1, partial (49%) 27 8.6
TC8031 similar to UP|Q9FR33 (Q9FR33) Ripening regulated protein ... 27 8.6
>TC19057 similar to UP|Q93X45 (Q93X45) Xaa-Pro aminopeptidase 2 , partial
(26%)
Length = 564
Score = 183 bits (465), Expect = 7e-47
Identities = 94/185 (50%), Positives = 119/185 (63%), Gaps = 21/185 (11%)
Frame = +2
Query: 410 AKAIKNETELKGMQECHLRDAAALAQFWDWLEK---------------------EITNDR 448
AKA+KN EL+G+++ H+RD AA+ Q+ WL+K E++
Sbjct: 8 AKALKNPVELEGLKQAHIRDGAAVVQYLVWLDKQMQDIFGASGYFSEGNTVKKEELSQSL 187
Query: 449 ILTEVEVSDKLLEFRSKQAGFLDTSFDTISGSGPNGAIIHYKPEPGSCSTVDANKLFLLD 508
LTEV VSDKL FR+ + F SF TIS GPNGA+IHY P+ +C+ +D +K++L D
Sbjct: 188 KLTEVTVSDKLEGFRASKKHFRGLSFPTISSVGPNGAVIHYSPKAETCAELDPDKIYLFD 367
Query: 509 SGAQYVDGTTDITRTVHFGKPTTREKECFTRVLQGHIALDQAVFPEDTPGFVLDAFARSF 568
SGAQY+DGTTDITRTVHFGKP+ EK C+T VL+GHIAL AVFP T G LD AR
Sbjct: 368 SGAQYLDGTTDITRTVHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTNGHALDILARIP 547
Query: 569 LWKVG 573
LWK G
Sbjct: 548 LWKNG 562
>TC17483 similar to UP|O23206 (O23206) Aminopeptidase-like protein, partial
(17%)
Length = 652
Score = 105 bits (261), Expect = 3e-23
Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Frame = +2
Query: 606 PLVNGMIVSNEPGYYEDHAFGIRIENLLYVRNVETPNRFGGIQYLGFEKLTYVPIQIKLV 665
PL + M V++EPGYYED AFGIR+EN+L + +T FG YL FE +T+ P Q KL+
Sbjct: 23 PLQSSMTVTDEPGYYEDGAFGIRLENVLIINEADTKFNFGDKGYLSFEHITWAPYQTKLI 202
Query: 666 DVSLLSTTEIDWLNNYHSVVWEKVSPLLDGSA-RQWLWNNTQPI 708
D++LL+ EI+WLN+YHS + + P LD +A +WL T+P+
Sbjct: 203 DLNLLTPDEINWLNSYHSRCRDILQPHLDDAAENEWLKKATEPV 334
>BF177624
Length = 315
Score = 34.7 bits (78), Expect = 0.054
Identities = 18/63 (28%), Positives = 29/63 (45%)
Frame = +3
Query: 460 LEFRSKQAGFLDTSFDTISGSGPNGAIIHYKPEPGSCSTVDANKLFLLDSGAQYVDGTTD 519
+E+ K G F+ + G GPN ++IHY + L L+D G + +D
Sbjct: 129 VEYECKMRGAQRMGFNPVVGGGPNASVIHYARND---QKIKHGDLVLMDVGCELHGYASD 299
Query: 520 ITR 522
+TR
Sbjct: 300 LTR 308
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 31.6 bits (70), Expect = 0.46
Identities = 24/80 (30%), Positives = 38/80 (47%)
Frame = -2
Query: 4 RSLSSSSSSSPATVTKLALSIHSSFPTLNLNPIFFYKFKSNKHNKPPFFSIRNCTTSNSI 63
+SL +SSSS+ ATV + S+ S + + + S+ + PP +S+S
Sbjct: 300 KSLDASSSSAAATVRRTRYSVPKSSSSSSSSSSSSSSSSSSSGSPPPPRPPSTPPSSSSS 121
Query: 64 SAKPSSQLRKNRSSNSDSDP 83
S+ SS SS+S S P
Sbjct: 120 SSSSSSSPPPGASSSSSSSP 61
>TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%)
Length = 632
Score = 30.8 bits (68), Expect = 0.78
Identities = 15/53 (28%), Positives = 24/53 (44%)
Frame = +3
Query: 317 TEEVDDHLKKANIEIRPYNSIVSEIENLAARGSSLWLDTSSVNAAIVNAYKAA 369
T+E D++ + RP+ +EI + +GS +WL T AY A
Sbjct: 363 TQEEDNNKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDRA 521
>BP033791
Length = 523
Score = 30.4 bits (67), Expect = 1.0
Identities = 22/72 (30%), Positives = 32/72 (43%)
Frame = +3
Query: 8 SSSSSSPATVTKLALSIHSSFPTLNLNPIFFYKFKSNKHNKPPFFSIRNCTTSNSISAKP 67
++S PA K + S+ + PTL L+P F +PP N TT S+
Sbjct: 306 AASICGPADGDKTSRSLP*TLPTLPLSPTFLLAVPICLEVEPPLSPPANDTTVFSVMLSS 485
Query: 68 SSQLRKNRSSNS 79
SS ++ SS S
Sbjct: 486 SSSTDESPSSTS 521
>TC14556 homologue to UP|Q9ZTW5 (Q9ZTW5) GDP-mannose pyrophosphorylase,
complete
Length = 1521
Score = 28.9 bits (63), Expect = 3.0
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -2
Query: 204 LKHVISKKNHELVYLYNSNLVDEI--WKEARPEPPNKPVRVHG 244
LK + +NH LV N L + W + EPPNK +HG
Sbjct: 284 LKSLYLVQNHRLVSKINKRLRETECQWPQPSSEPPNKNQSLHG 156
>TC19264 homologue to UP|O24293 (O24293) Chloroplast inner envelope
protein, 110 kDa (IEP110) precursor, partial (10%)
Length = 431
Score = 28.5 bits (62), Expect = 3.9
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Frame = +3
Query: 5 SLSSSSSSSPATVTKLALSIHSSFPTLNLNPIFFYKFKSNKH-------NKPPFFSIRNC 57
SLSSSSSSS ++ + ++HS+ N PI +F N + PPF S +
Sbjct: 3 SLSSSSSSSLNPISSHSNTLHSA----NSEPIQRRRFTGNHEPVHPHPFSHPPFPSTPSS 170
Query: 58 TT----SNSISAKPSSQLRKNRSSNS 79
T + S + P S L RS++S
Sbjct: 171LTLPHPTPSFQSLPPSLLLLRRSTSS 248
>TC15443
Length = 745
Score = 28.5 bits (62), Expect = 3.9
Identities = 24/83 (28%), Positives = 36/83 (42%), Gaps = 4/83 (4%)
Frame = +3
Query: 335 NSIVSEIENLAARGSSLWLDTSSV----NAAIVNAYKAACDRYYQNYESKHKTRSKGFDG 390
N S +E+ GSS D+SSV + I + +C R + E+ + S GF
Sbjct: 120 NGTESSVESTVTSGSSFLSDSSSVLEKGASGICTSSTLSCFRLISSAEASNTGESSGFSI 299
Query: 391 SIANSDVPIAVHKSSPVSLAKAI 413
S A S + SSP L + +
Sbjct: 300 SAAAS----SAFTSSPSVLDEGV 356
>TC12777 similar to UP|Q9SYP6 (Q9SYP6) F9H16.10 protein, partial (10%)
Length = 500
Score = 28.1 bits (61), Expect = 5.1
Identities = 17/41 (41%), Positives = 23/41 (55%), Gaps = 2/41 (4%)
Frame = +3
Query: 545 IALDQAVFPEDTPGFVLDAFARSFLWKV--GLDYRHGTGHG 583
+ L + P+D L A A SF+ KV GL+ HGTG+G
Sbjct: 105 LELSEQTVPDD-----LKALADSFMAKVNQGLEQAHGTGYG 212
>AV776280
Length = 458
Score = 28.1 bits (61), Expect = 5.1
Identities = 20/49 (40%), Positives = 26/49 (52%), Gaps = 3/49 (6%)
Frame = -2
Query: 668 SLLSTTEIDWLNNYHSVVWEKVSPLL---DGSARQWLWNNTQPIIRETV 713
SL + T + L NYH V +S LL S R +LW +T P+I TV
Sbjct: 169 SLYAATVV--LFNYHIPVASGLSNLLLPFACSVRSFLWKHTHPVITYTV 29
>TC11303 homologue to UP|O82651 (O82651) Squamosa-promoter binding
protein-like 1, partial (3%)
Length = 512
Score = 28.1 bits (61), Expect = 5.1
Identities = 16/29 (55%), Positives = 18/29 (61%)
Frame = +2
Query: 5 SLSSSSSSSPATVTKLALSIHSSFPTLNL 33
SL SS S SP TVT L L +S FP+ L
Sbjct: 137 SLPSSPSPSPLTVTPLLLFSNSLFPSPEL 223
>TC8094 homologue to UP|EFTU_PEA (O24310) Elongation factor Tu, chloroplast
precursor (EF-Tu), partial (60%)
Length = 1092
Score = 28.1 bits (61), Expect = 5.1
Identities = 25/74 (33%), Positives = 32/74 (42%), Gaps = 1/74 (1%)
Frame = +1
Query: 5 SLSSSSSSSPATVT-KLALSIHSSFPTLNLNPIFFYKFKSNKHNKPPFFSIRNCTTSNSI 63
S+SSSSSS A V+ KLA +F T + H S +S +
Sbjct: 85 SISSSSSSVTAAVSSKLATQPPHAFST---------SISTTNHKLITRLSSSFLNSSTIL 237
Query: 64 SAKPSSQLRKNRSS 77
PSS R+NRSS
Sbjct: 238 HVTPSSSARRNRSS 279
>TC14285 similar to UP|Q9AXU5 (Q9AXU5) Pathogen-inducible alpha-dioxygenase,
partial (97%)
Length = 2266
Score = 27.7 bits (60), Expect = 6.6
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +1
Query: 305 DGAKLFIDNSKVTEEVDDHLKKANIEIRPYNSIVSEIENLAARGS--SLWLDTSSVNAAI 362
DG+ L+ +V ++V K I+I ++ A G + W S++ A
Sbjct: 706 DGSVLYGSTEEVLKKVRT-FKDGKIKISKNGHLLHNENGTAISGDIRNSWAGVSTLQALF 882
Query: 363 VNAYKAACDRYYQNY 377
+ + A CD +NY
Sbjct: 883 IQEHNAVCDALKKNY 927
>TC16067 UP|Q9ZRY4 (Q9ZRY4) NDX1 homeobox protein, complete
Length = 3271
Score = 27.7 bits (60), Expect = 6.6
Identities = 23/81 (28%), Positives = 41/81 (50%)
Frame = +2
Query: 242 VHGLKYAGLDVASKLSSLRSELVQAGSSAIIVTALDEIAWLLNLRGSDIPHSPVVYAYLI 301
VH L GL + + L L ++AII + +E + LRG + HS + +
Sbjct: 233 VHHLTGKGLLLKIDMDKLAGSLPLHLTAAIISSDRNEALFRYLLRGIRLLHSLCDLSPRL 412
Query: 302 VEIDGAKLFIDNSKVTEEVDD 322
++D ++F+D+ KV E++ D
Sbjct: 413 PKLD--QIFLDDVKVLEQLMD 469
>AV408141
Length = 427
Score = 27.3 bits (59), Expect = 8.6
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +2
Query: 5 SLSSSSSSSPATVTKLALSIHSSFPTL 31
S SS+SSSSPA T + IHS+ P L
Sbjct: 344 SSSSASSSSPAASTPPSSPIHSTRPLL 424
>TC14439 similar to UP|Q9FIC1 (Q9FIC1) Gb|AAF19567.1, partial (49%)
Length = 2120
Score = 27.3 bits (59), Expect = 8.6
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Frame = -1
Query: 2 NMRSLSSSSSSSPATVTKLALSIHSSFPTL------NLNPIFFYKFKSNKHNKPPFF--- 52
++R LSS + S AT +++++H+S P + + I + +N+ + F
Sbjct: 440 SLRRLSSPAQSVEATAIAVSMNVHTSIPAVFNTDRKSSKSISEARAWNNQQSTSSFTKNR 261
Query: 53 SIRNC---TTSNS 62
SIRNC T SNS
Sbjct: 260 SIRNCNIYTLSNS 222
>TC8031 similar to UP|Q9FR33 (Q9FR33) Ripening regulated protein DDTFR10/A
(Fragment), partial (44%)
Length = 1109
Score = 27.3 bits (59), Expect = 8.6
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 332 RPYNSIVSEIENLAARGSSLWLDTSSVNAAIVNAYKAA 369
RP+ +EI + RGS +WL T AY A
Sbjct: 569 RPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRA 682
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,508,244
Number of Sequences: 28460
Number of extensions: 174561
Number of successful extensions: 1016
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of query: 713
length of database: 4,897,600
effective HSP length: 97
effective length of query: 616
effective length of database: 2,136,980
effective search space: 1316379680
effective search space used: 1316379680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Medicago: description of AC146571.1