BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146570.6 + phase: 0
(101 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9031 similar to GB|AAP21369.1|30102902|BT006561 At4g19200 {Ara... 28 0.19
BP030941 26 0.95
TC12279 weakly similar to UP|Q8H0I0 (Q8H0I0) Beta-1,3-glucanase-... 25 1.6
BP063249 25 2.1
TC18424 similar to UP|Q7XAK5 (Q7XAK5) Nitrate transporter, parti... 25 2.1
TC15219 similar to PIR|T00986|T00986 yeast pheromone receptor-li... 25 2.8
BP052246 24 3.6
TC15480 similar to UP|V712_ARATH (Q9SIQ9) Vesicle-associated mem... 24 3.6
TC8753 similar to GB|AAN64535.1|24797046|BT001144 At1g01050/T25K... 24 4.7
TC8749 24 4.7
BP036717 23 6.2
TC8723 homologue to UP|TBB1_LUPAL (P37392) Tubulin beta-1 chain,... 23 6.2
TC12132 similar to UP|AAR14275 (AAR14275) Predicted protein, par... 23 6.2
BP055520 23 6.2
AV409919 23 6.2
TC14792 similar to UP|O73620 (O73620) Nuclear protein SDK2, part... 23 8.0
TC18096 similar to UP|Q9SY59 (Q9SY59) F14N23.5, partial (5%) 23 8.0
TC8230 homologue to UP|Q9FLF0 (Q9FLF0) 40S ribosomal protein S9,... 23 8.0
AV768208 23 8.0
TC13356 weakly similar to UP|Q9SVG3 (Q9SVG3) Reticuline oxidase-... 23 8.0
>TC9031 similar to GB|AAP21369.1|30102902|BT006561 At4g19200 {Arabidopsis
thaliana;}, partial (26%)
Length = 670
Score = 28.5 bits (62), Expect = 0.19
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 4 NKINKAIISYIISLKTKKLEELSTSSKNIIKKIYKAIHCK 43
N I++A + Y I + K LST +K I +K KA CK
Sbjct: 650 NHISRATVLYFIIVLHKDNNPLSTEAKTIQEKERKASTCK 531
>BP030941
Length = 434
Score = 26.2 bits (56), Expect = 0.95
Identities = 12/35 (34%), Positives = 21/35 (59%)
Frame = +2
Query: 3 INKINKAIISYIISLKTKKLEELSTSSKNIIKKIY 37
+N + I+ L T+ LEE+ST + +++KIY
Sbjct: 56 LNNYMPTKVDLILILHTRSLEEVSTLRE*LLQKIY 160
>TC12279 weakly similar to UP|Q8H0I0 (Q8H0I0) Beta-1,3-glucanase-like
protein, partial (29%)
Length = 474
Score = 25.4 bits (54), Expect = 1.6
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +3
Query: 83 NQLSEPPRTPRSSPSSS 99
NQ S+PP+ PRS P S
Sbjct: 213 NQGSQPPQIPRSQPGQS 263
>BP063249
Length = 515
Score = 25.0 bits (53), Expect = 2.1
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 12 SYIIS-LKTKKLEELSTSSKNIIKKIYKAIHCKI 44
SYI + +K KKL ++S +KNI KI + C +
Sbjct: 131 SYIKA*IKNKKLNKISNVNKNINLKIKQITPCNL 232
>TC18424 similar to UP|Q7XAK5 (Q7XAK5) Nitrate transporter, partial (20%)
Length = 363
Score = 25.0 bits (53), Expect = 2.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 86 SEPPRTPRSSPSSSF 100
S PPRTP+ +P SS+
Sbjct: 132 SSPPRTPQGTPESSW 88
>TC15219 similar to PIR|T00986|T00986 yeast pheromone receptor-like protein
AR781 [imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (11%)
Length = 571
Score = 24.6 bits (52), Expect = 2.8
Identities = 12/43 (27%), Positives = 25/43 (57%)
Frame = -2
Query: 56 LWKKTILMGEKCQPLEFPGAIFYDSEGNQLSEPPRTPRSSPSS 98
L +++ ++ + C+ L P +E + +S+PP T ++PSS
Sbjct: 486 LGERSGVLEDSCRGLILPPWKSSSAERDGVSDPPPTENANPSS 358
>BP052246
Length = 527
Score = 24.3 bits (51), Expect = 3.6
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +1
Query: 44 ILKMKKQEDDKCLWKKTILMGEKC 67
I+K K E++ +W K++ + E+C
Sbjct: 25 IMKNKSHENNPLMWTKSLKLLERC 96
>TC15480 similar to UP|V712_ARATH (Q9SIQ9) Vesicle-associated membrane
protein 712 (AtVAMP712), partial (53%)
Length = 482
Score = 24.3 bits (51), Expect = 3.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 86 SEPPRTPRSSPSSS 99
+EPP+TP SPS S
Sbjct: 182 AEPPQTPAQSPSKS 223
>TC8753 similar to GB|AAN64535.1|24797046|BT001144 At1g01050/T25K16_5
{Arabidopsis thaliana;}, partial (93%)
Length = 980
Score = 23.9 bits (50), Expect = 4.7
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 39 AIHCKILKMKKQEDDKCLWKKTILMGEKC 67
A+H + LK+K+ D C+ T+ +C
Sbjct: 868 AVHNRNLKLKELNSDGCISAATLTQKSEC 782
>TC8749
Length = 643
Score = 23.9 bits (50), Expect = 4.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 13 YIISLKTKKLEELSTSSKNIIKKIYK 38
YI + K+ EEL SKN + + YK
Sbjct: 72 YIFDVSEKEAEELRNISKNDVVEWYK 149
>BP036717
Length = 477
Score = 23.5 bits (49), Expect = 6.2
Identities = 9/17 (52%), Positives = 11/17 (63%)
Frame = -3
Query: 80 SEGNQLSEPPRTPRSSP 96
SE +L PPR PR+ P
Sbjct: 163 SERRRLCHPPRAPRTPP 113
>TC8723 homologue to UP|TBB1_LUPAL (P37392) Tubulin beta-1 chain, complete
Length = 1689
Score = 23.5 bits (49), Expect = 6.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 81 EGNQLSEPPRTPRSSPSSS 99
EGN S+PP P PS S
Sbjct: 505 EGNHSSQPPF*PHRGPSQS 449
>TC12132 similar to UP|AAR14275 (AAR14275) Predicted protein, partial (14%)
Length = 698
Score = 23.5 bits (49), Expect = 6.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 83 NQLSEPPRTPRSSPS 97
N +S PP PRSSP+
Sbjct: 388 NPMSPPPDKPRSSPT 432
>BP055520
Length = 397
Score = 23.5 bits (49), Expect = 6.2
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +2
Query: 48 KKQEDDKCLWKKTILMGEKCQPLEFPGAIFYDSEGNQLSEPPRTPRSSPSSSF 100
K Q+ C+ K I++ F + F DSE + TP +PSSSF
Sbjct: 101 KNQKCFACVCKIIIII---TLSFTFLSSSFNDSESSTTLSTISTPSLTPSSSF 250
>AV409919
Length = 423
Score = 23.5 bits (49), Expect = 6.2
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +3
Query: 86 SEPPRTPRSSPSS 98
S PPR P SSPSS
Sbjct: 264 SPPPRPPPSSPSS 302
>TC14792 similar to UP|O73620 (O73620) Nuclear protein SDK2, partial (5%)
Length = 492
Score = 23.1 bits (48), Expect = 8.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 80 SEGNQLSEPPRTPRSSPSSS 99
SE N+ PP P SPS+S
Sbjct: 78 SESNRNVHPPSNPPPSPSTS 137
>TC18096 similar to UP|Q9SY59 (Q9SY59) F14N23.5, partial (5%)
Length = 870
Score = 23.1 bits (48), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 74 GAIFYDSEGNQLSEPPRTPRSSPSSS 99
GA F+ ++G L+EP SSP S
Sbjct: 387 GAAFFKTDGCILAEPVVAHSSSPQES 310
>TC8230 homologue to UP|Q9FLF0 (Q9FLF0) 40S ribosomal protein S9, complete
Length = 846
Score = 23.1 bits (48), Expect = 8.0
Identities = 14/36 (38%), Positives = 19/36 (51%)
Frame = -1
Query: 16 SLKTKKLEELSTSSKNIIKKIYKAIHCKILKMKKQE 51
SLK + L++ SKNIIK + I I K Q+
Sbjct: 399 SLKPSLEKILNSKSKNIIKLVLSLIKKPITKHPPQQ 292
>AV768208
Length = 283
Score = 23.1 bits (48), Expect = 8.0
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -1
Query: 88 PPRTPRSSPSSSF 100
PPR RS+PSS+F
Sbjct: 88 PPREMRSAPSSAF 50
>TC13356 weakly similar to UP|Q9SVG3 (Q9SVG3) Reticuline oxidase-like
protein, partial (16%)
Length = 433
Score = 23.1 bits (48), Expect = 8.0
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 85 LSEPPRTPRSSPSS 98
LS PP TP S PSS
Sbjct: 178 LSSPPPTPPSPPSS 219
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.132 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,790,579
Number of Sequences: 28460
Number of extensions: 22501
Number of successful extensions: 132
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of query: 101
length of database: 4,897,600
effective HSP length: 77
effective length of query: 24
effective length of database: 2,706,180
effective search space: 64948320
effective search space used: 64948320
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)
Medicago: description of AC146570.6