BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146569.5 + phase: 0
(211 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15522 27 2.6
AV777152 27 2.6
TC13433 similar to UP|Q8VZD9 (Q8VZD9) AT5g53140/MFH8_8, partial ... 27 2.6
BI417786 27 3.4
TC18788 weakly similar to UP|Q9SSA6 (Q9SSA6) F4P13.1 protein, pa... 26 4.5
TC7929 similar to UP|GGH_ARATH (O65355) Gamma-glutamyl hydrolase... 26 5.8
TC8200 weakly similar to UP|Q9JGS9 (Q9JGS9) PORF2b, partial (23%) 26 5.8
TC14178 26 5.8
BP050750 26 5.8
AU240108 25 7.6
TC16074 similar to UP|Q8H9E8 (Q8H9E8) Resistant specific protein... 25 10.0
>TC15522
Length = 1383
Score = 26.9 bits (58), Expect = 2.6
Identities = 11/41 (26%), Positives = 20/41 (47%)
Frame = -1
Query: 130 YMLNVGGEIHITHKTAHPFSNWNIKNLAENEKLLFIEEVTF 170
+++ +++ + HPFSN + N N L +EE F
Sbjct: 1170 FLIGSQTRLNVVDHSPHPFSNSKLCNFXGNTHFLVVEE*NF 1048
>AV777152
Length = 417
Score = 26.9 bits (58), Expect = 2.6
Identities = 17/58 (29%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Frame = +3
Query: 71 IMHEVDVHNMNQHHQLKH--HNFFDRIIFNF-PHSGFFQNESDAWVIGEHKKLVSGFL 125
++HEV++ N NQ L+H ++ + F F PH G + E ++ H + FL
Sbjct: 129 LVHEVNLPNKNQRAFLRHLEQSYTSLLFFLFPPHQGNMKIEGESARSYSHVSTFTDFL 302
>TC13433 similar to UP|Q8VZD9 (Q8VZD9) AT5g53140/MFH8_8, partial (20%)
Length = 557
Score = 26.9 bits (58), Expect = 2.6
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 60 NLIELEGLGCTIMHEVDVHNMNQHHQLKH-HNFFDRIIFN 98
NL+ ++ GC+ +++D + Q H+ H H F I N
Sbjct: 552 NLVSVKNFGCS*DYQIDXPSNXQQHENHHDHQIFQISILN 433
>BI417786
Length = 513
Score = 26.6 bits (57), Expect = 3.4
Identities = 8/30 (26%), Positives = 14/30 (46%)
Frame = +2
Query: 69 CTIMHEVDVHNMNQHHQLKHHNFFDRIIFN 98
CT+ H H + HH HH+ ++ +
Sbjct: 77 CTLSHLTSYHPSHHHHHHHHHHHHHHVLLH 166
>TC18788 weakly similar to UP|Q9SSA6 (Q9SSA6) F4P13.1 protein, partial (7%)
Length = 951
Score = 26.2 bits (56), Expect = 4.5
Identities = 14/39 (35%), Positives = 19/39 (47%), Gaps = 7/39 (17%)
Frame = -3
Query: 76 DVHNM--NQHHQLK-----HHNFFDRIIFNFPHSGFFQN 107
D NM QHH+ HH + D I++ PH F+N
Sbjct: 202 DSSNMYDTQHHKYHIVEHCHHPYQDHILYRLPHPRGFRN 86
>TC7929 similar to UP|GGH_ARATH (O65355) Gamma-glutamyl hydrolase precursor
(Gamma-Glu-X carboxypeptidase) (Conjugase) (GH) ,
partial (83%)
Length = 1299
Score = 25.8 bits (55), Expect = 5.8
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -2
Query: 18 VGEGDFSFALCLAKAFGSAVNMVATSLDDR 47
VG GD A +A+A GSAV V DDR
Sbjct: 293 VGGGDVGSAGGVAEAAGSAVAWVGDDSDDR 204
>TC8200 weakly similar to UP|Q9JGS9 (Q9JGS9) PORF2b, partial (23%)
Length = 930
Score = 25.8 bits (55), Expect = 5.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 52 MKYRGAIRNLIELEGLGCTIMHEVDVHNMNQHHQLKHHN 90
++ A++ L E+E +M DVH+ +HH HH+
Sbjct: 493 LRSHSAVQRLPEME-----MMDRHDVHHYRRHHAHGHHH 594
>TC14178
Length = 609
Score = 25.8 bits (55), Expect = 5.8
Identities = 15/37 (40%), Positives = 22/37 (58%)
Frame = +3
Query: 5 IVKHYSSFHNILLVGEGDFSFALCLAKAFGSAVNMVA 41
++ HY SF+ +LL+ S+ALC SAVN+ A
Sbjct: 51 VILHYYSFNFLLLLMMAHMSWALCY-----SAVNIRA 146
>BP050750
Length = 503
Score = 25.8 bits (55), Expect = 5.8
Identities = 13/55 (23%), Positives = 24/55 (43%)
Frame = +3
Query: 138 IHITHKTAHPFSNWNIKNLAENEKLLFIEEVTFYQHFYPGYGNKKGAGFKCDKSF 192
I + H +P + + N +E + Y H +P Y K+G + +K+F
Sbjct: 75 IEMDHGEKYPLTRLTLDNP--------LERLDSYPHNHPSYKTKRGRFYSTNKAF 215
>AU240108
Length = 300
Score = 25.4 bits (54), Expect = 7.6
Identities = 15/35 (42%), Positives = 18/35 (50%)
Frame = +2
Query: 12 FHNILLVGEGDFSFALCLAKAFGSAVNMVATSLDD 46
F + L+GEG+ AFGSAVN AT D
Sbjct: 146 FLKVALIGEGEV--------AFGSAVNGAATDAAD 226
>TC16074 similar to UP|Q8H9E8 (Q8H9E8) Resistant specific protein-3, partial
(6%)
Length = 844
Score = 25.0 bits (53), Expect = 10.0
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Frame = -3
Query: 64 LEGLGCT---IMHEVDVHNMNQ-----HHQLKHHNFFDRIIFNFPH 101
L+ GC + HE +H + HHQ HH+ F++ ++ H
Sbjct: 365 LDPCGCDPYEMTHEYALHFQSSFYVHLHHQHHHHHLFEQASYSILH 228
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.141 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,325,763
Number of Sequences: 28460
Number of extensions: 64742
Number of successful extensions: 455
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of query: 211
length of database: 4,897,600
effective HSP length: 86
effective length of query: 125
effective length of database: 2,450,040
effective search space: 306255000
effective search space used: 306255000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)
Medicago: description of AC146569.5