TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146568.9 + phase: 0 /pseudo
         (19 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15635 homologue to UP|Q9XF99 (Q9XF99) Skp1 (Fragment), partial...    31  0.053
TC14840 similar to UP|Q9XF99 (Q9XF99) Skp1 (Fragment), partial (...    30  0.12

>TC15635 homologue to UP|Q9XF99 (Q9XF99) Skp1 (Fragment), partial (98%)
          Length = 810

 Score = 31.2 bits (69), Expect = 0.053
 Identities = 14/17 (82%), Positives = 15/17 (87%)
 Frame = +2

Query: 3   SSTRKITLKSSDGETFE 19
           SS +KITLKSSDGE FE
Sbjct: 110 SSAKKITLKSSDGEAFE 160


>TC14840 similar to UP|Q9XF99 (Q9XF99) Skp1 (Fragment), partial (98%)
          Length = 749

 Score = 30.0 bits (66), Expect = 0.12
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +1

Query: 2  SSSTRKITLKSSDGETFE 19
          SS  +K+TLKSSDGE FE
Sbjct: 58 SSPPKKVTLKSSDGEAFE 111


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.298    0.112    0.266 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,636
Number of Sequences: 28460
Number of extensions: 447
Number of successful extensions: 3
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 19
length of database: 4,897,600
effective HSP length: 0
effective length of query: 24
effective length of database: 4,897,600
effective search space: 117542400
effective search space used: 117542400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 50 (23.9 bits)