TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146568.12 + phase: 0 /pseudo
         (1737 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB827612                                                               41  0.001
TC14613 homologue to UP|PAL2_PEA (Q04593) Phenylalanine ammonia-...    30  3.3
TC17683 weakly similar to UP|P93816 (P93816) F19P19.10, partial ...    28  9.5

>CB827612 
          Length = 277

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 33/91 (36%), Positives = 49/91 (53%)
 Frame = +2

Query: 1593 VIFQ*S*STKLIGPSKLLILIKL*LVRKDS*SSMS*KK*DLVRMRTPSFTKRELRSIMTR 1652
            V F * *+T LIG  K++I      V K++ +  S K *D   M+   F KR+L   M +
Sbjct: 5    VTFL*R*NTVLIGQ*KVVIXRCNKQVLKENSNYSSLKN*D*GLMKALGFIKRKLSIXMIK 184

Query: 1653 VW*GESFMLDNLFCCLIPG*NYFPGN*NPSG 1683
             + G + +  N F CLIP  + + GN +P+G
Sbjct: 185  *FLGRNSLWANKFYCLIPALSLWRGNFDPNG 277


>TC14613 homologue to UP|PAL2_PEA (Q04593) Phenylalanine ammonia-lyase 2  ,
            partial (47%)
          Length = 1048

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 11/26 (42%), Positives = 18/26 (68%)
 Frame = +1

Query: 1015 LRYLWTISLYLVSRLTNACFISMLSL 1040
            L +LWT   +L+ +L N+C ++ LSL
Sbjct: 676  LEFLWTTHAWLLQQLANSCLLNSLSL 753


>TC17683 weakly similar to UP|P93816 (P93816) F19P19.10, partial (5%)
          Length = 561

 Score = 28.5 bits (62), Expect = 9.5
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = -3

Query: 289 IPCFLIHNN--NNNQESLQVLRKQ 310
           IPCFLIHN   +N+  S+ + RKQ
Sbjct: 553 IPCFLIHNRGASNSVSSMYIRRKQ 482


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.369    0.165    0.601 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,462,759
Number of Sequences: 28460
Number of extensions: 405158
Number of successful extensions: 4949
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2684
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 2166
Number of HSP's gapped (non-prelim): 3020
length of query: 1737
length of database: 4,897,600
effective HSP length: 103
effective length of query: 1634
effective length of database: 1,966,220
effective search space: 3212803480
effective search space used: 3212803480
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 62 (28.5 bits)