TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146567.9 + phase: 0 
         (80 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11035 homologue to UP|Q9C6K5 (Q9C6K5) Sm-like protein, partial...   135  2e-33
TC15285 homologue to PIR|T10586|T10586 small nuclear ribonucleop...    38  3e-04
BP049645                                                               35  0.002
TC19444 weakly similar to UP|LSM7_HUMAN (Q9UK45) U6 snRNA-associ...    34  0.006
TC18479 similar to UP|O80960 (O80960) Nodulin-like protein (At2g...    29  0.18
TC10991 similar to UP|Q8VYA0 (Q8VYA0) Aspartate--tRNA ligase-lik...    26  1.2
AV409341                                                               26  1.2
BP038045                                                               26  1.5
TC15902 similar to UP|Q948P0 (Q948P0) Aspartic proteinase alpha,...    24  5.8
TC17792                                                                24  5.8
TC13496                                                                23  7.5
BP076242                                                               23  7.5

>TC11035 homologue to UP|Q9C6K5 (Q9C6K5) Sm-like protein, partial (96%)
          Length = 576

 Score =  135 bits (339), Expect = 2e-33
 Identities = 68/70 (97%), Positives = 69/70 (98%)
 Frame = +2

Query: 5  EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDD 64
          EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDD
Sbjct: 23 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDD 202

Query: 65 ETYEEIVRVS 74
          ETYEEIVR +
Sbjct: 203ETYEEIVRTT 232


>TC15285 homologue to PIR|T10586|T10586 small nuclear
           ribonucleoprotein-associated protein homolog            
              F9F13.90 - Arabidopsis thaliana {Arabidopsis
           thaliana;}, partial (61%)
          Length = 587

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 15/35 (42%), Positives = 26/35 (73%)
 Frame = +3

Query: 21  LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 55
           ++ R+ V ++  R+L GK  A+D+H+N++LGD EE
Sbjct: 114 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 218


>BP049645 
          Length = 415

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 13/37 (35%), Positives = 27/37 (72%)
 Frame = -3

Query: 24  RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTV 60
           ++ +  R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 380 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 270


>TC19444 weakly similar to UP|LSM7_HUMAN (Q9UK45) U6 snRNA-associated
           Sm-like protein LSm7, partial (88%)
          Length = 565

 Score = 33.9 bits (76), Expect = 0.006
 Identities = 17/44 (38%), Positives = 27/44 (60%)
 Frame = +3

Query: 14  LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIV 57
           LDL +  +D+ + VKL   R++ G L  YDQ LN++L +  E +
Sbjct: 135 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFL 263


>TC18479 similar to UP|O80960 (O80960) Nodulin-like protein
           (At2g39210/T16B24.15), partial (27%)
          Length = 524

 Score = 28.9 bits (63), Expect = 0.18
 Identities = 19/54 (35%), Positives = 27/54 (49%), Gaps = 1/54 (1%)
 Frame = -1

Query: 28  KLRSDRELRGKLHAYDQH-LNMILGDVEEIVTTVEIDDETYEEIVRVSHNPNHS 80
           KLR D   R KL  YDQH +   L    E V    + +   ++I R  H+P++S
Sbjct: 392 KLRKDHWAR*KLSEYDQHRIRAELESALEAVENCTLSEHVLKQIQR-KHDPHNS 234


>TC10991 similar to UP|Q8VYA0 (Q8VYA0) Aspartate--tRNA ligase-like protein,
           partial (42%)
          Length = 680

 Score = 26.2 bits (56), Expect = 1.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 14  LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMI 49
           LDL+R+ L       L  D   +G LHA+  HLN I
Sbjct: 456 LDLVRVEL-------LFLDWTTKGNLHAWPNHLNFI 542


>AV409341 
          Length = 321

 Score = 26.2 bits (56), Expect = 1.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 22  DERIYVKLRSDRELRGKLHAYD 43
           + R YVK RSD +LR K   YD
Sbjct: 224 NHRRYVKSRSDTQLRSKAAEYD 289


>BP038045 
          Length = 556

 Score = 25.8 bits (55), Expect = 1.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 35  LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR 72
           +RG LH+ DQ+LN+      ++  T  +D + Y  +V+
Sbjct: 103 IRGTLHSVDQYLNI------KLENTRVVDQDKYPHMVK 198


>TC15902 similar to UP|Q948P0 (Q948P0) Aspartic proteinase alpha, partial
           (25%)
          Length = 517

 Score = 23.9 bits (50), Expect = 5.8
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +3

Query: 11  KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 67
           K PLDL  ++  +++  +LRS R + G L      LN+   D E IV      D  Y
Sbjct: 237 KRPLDLQSINAAKKVSGELRSVRPMLGAL-----DLNIGKPDGEAIVPLKNYLDAQY 392


>TC17792 
          Length = 665

 Score = 23.9 bits (50), Expect = 5.8
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 31 SDRELRGKLHAYDQHLNMILGD-VEEIVTTVEIDDET 66
          S+ +  G + A  +HLN+ILG  +  I  T+++ D+T
Sbjct: 7  SEVKKMGGVRAEKEHLNLILGSHLTTIHDTLQVLDQT 117


>TC13496 
          Length = 576

 Score = 23.5 bits (49), Expect = 7.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 1   MAGTEEESAVKEPLDLIRLSLDE 23
           M G    S V  P DL+R+ +DE
Sbjct: 122 MTGQGHASNVMMPFDLLRIKIDE 190


>BP076242 
          Length = 470

 Score = 23.5 bits (49), Expect = 7.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 31  SDRELRGKLHAYDQHLNMIL 50
           S++ +  KLH ++ HLN +L
Sbjct: 179 SNQRIHSKLHLWNHHLNPLL 238


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.313    0.134    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,048,184
Number of Sequences: 28460
Number of extensions: 9254
Number of successful extensions: 33
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of query: 80
length of database: 4,897,600
effective HSP length: 56
effective length of query: 24
effective length of database: 3,303,840
effective search space: 79292160
effective search space used: 79292160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)