BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146567.15 + phase: 0 /pseudo
(225 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP071119 47 3e-06
AV780545 38 0.002
TC12556 similar to UP|Q7VZL8 (Q7VZL8) Biotin carboxyl carrier pr... 29 0.75
AV778920 28 0.98
BP041683 28 1.3
TC18075 28 1.3
AV774697 27 2.2
TC16726 similar to UP|GS11_ARATH (Q9LMP7) Golgi SNARE 11 protein... 27 3.7
TC13860 26 4.9
BP048398 26 4.9
AV407298 26 6.4
BP037456 26 6.4
TC14970 similar to UP|O24294 (O24294) Legumin (Minor small) prec... 25 8.3
AV765411 25 8.3
>BP071119
Length = 412
Score = 46.6 bits (109), Expect = 3e-06
Identities = 20/47 (42%), Positives = 29/47 (61%)
Frame = +2
Query: 2 SGLTTLLTSGYENISHGFVCAMTGRWHEETNNFHLPIGEMTIRLDDV 48
+GL ++ ++ + A RWH ET++FHLP GEMTI L+DV
Sbjct: 266 AGLRWVMKCTSPSVDQSIISAFVERWHPETSSFHLPWGEMTITLEDV 406
>AV780545
Length = 555
Score = 37.7 bits (86), Expect = 0.002
Identities = 14/32 (43%), Positives = 21/32 (64%)
Frame = +1
Query: 14 NISHGFVCAMTGRWHEETNNFHLPIGEMTIRL 45
++ + + A+ RW ETN FHL +GEMT+ L
Sbjct: 460 SLDNPLISALVERWRRETNTFHLNVGEMTVTL 555
>TC12556 similar to UP|Q7VZL8 (Q7VZL8) Biotin carboxyl carrier protein,
partial (10%)
Length = 706
Score = 28.9 bits (63), Expect = 0.75
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -3
Query: 67 TCEEGLKIMETDLLFTAEAAGKELTR*GASHISF 100
TC + KI + +L+F+A AAG + T SHISF
Sbjct: 452 TCNQQEKIKKKNLVFSATAAGLQQT----SHISF 363
>AV778920
Length = 413
Score = 28.5 bits (62), Expect = 0.98
Identities = 14/32 (43%), Positives = 20/32 (61%), Gaps = 1/32 (3%)
Frame = +1
Query: 138 GKNN-KNMNLIWLLALQDMDELDSWSWGGMRL 168
GK++ K +NL W L+L +D W W G+RL
Sbjct: 115 GKHDIKILNLKWSLSLPFEWGMDLWQWDGLRL 210
>BP041683
Length = 499
Score = 28.1 bits (61), Expect = 1.3
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 123 IKALLLLLLG*TIFLGKNNKNMNLIWLLALQDMDELDSWSWGGMRLAFL 171
I + LL+L IF G N + L+W A E S SW GM L ++
Sbjct: 407 INSKLLILFHIIIFCGTNWRR-GLVWAAAQVTWVEGSSLSWHGMNLVWI 264
>TC18075
Length = 538
Score = 28.1 bits (61), Expect = 1.3
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 171 LYEPLSLTSDSSVASRGGYMTLFVVIFVFLLF 202
++ L L+S + V RGG + ++V I+ FLLF
Sbjct: 240 IFSILKLSSAAMVICRGGLLLVWVFIWCFLLF 335
>AV774697
Length = 188
Score = 27.3 bits (59), Expect = 2.2
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -2
Query: 148 WLLALQD--MDELDSWSWGGMRLAFLYEPLSLTSDSSVASRGGYMTLFVVIFVFLLFYLL 205
W AL D M+ +W W +RLA +EPL + G M L ++ V +L +
Sbjct: 187 WS*ALDDGAMNSSVTWGWQ*LRLATQFEPLFTMLWAKKRLYGCKMDLQNLVLVIVLLIMN 8
Query: 206 DR 207
+R
Sbjct: 7 ER 2
>TC16726 similar to UP|GS11_ARATH (Q9LMP7) Golgi SNARE 11 protein
(AtGOS11) (Golgi SNAP receptor complex member 1-1),
partial (80%)
Length = 655
Score = 26.6 bits (57), Expect = 3.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 45 LDDVVCLLGIPITGRLLP 62
+D V+C LG+ TGRLLP
Sbjct: 68 IDLVICCLGMKKTGRLLP 15
>TC13860
Length = 623
Score = 26.2 bits (56), Expect = 4.9
Identities = 14/39 (35%), Positives = 21/39 (52%)
Frame = -2
Query: 125 ALLLLLLG*TIFLGKNNKNMNLIWLLALQDMDELDSWSW 163
+L LLLL ++LG N+ LL+L +D + W W
Sbjct: 175 SLCLLLLHNFMYLGIKETIANIFPLLSLYLLDRIRIWVW 59
>BP048398
Length = 582
Score = 26.2 bits (56), Expect = 4.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 188 GYMTLFVVIFVFLLFYLLDRKCL 210
GY +F+ ++ LL Y+L+R CL
Sbjct: 320 GYFLIFISGYLRLLLYILNRYCL 252
>AV407298
Length = 428
Score = 25.8 bits (55), Expect = 6.4
Identities = 12/37 (32%), Positives = 19/37 (50%)
Frame = +1
Query: 15 ISHGFVCAMTGRWHEETNNFHLPIGEMTIRLDDVVCL 51
++ VC GR+H E N + IGE + + V+ L
Sbjct: 190 VAMSLVCLHGGRFHPEQNMWQNGIGEELLNQNPVITL 300
>BP037456
Length = 433
Score = 25.8 bits (55), Expect = 6.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 115 QAQVRLACIKALLLLLLG*TIFLGKNNKNMNLIWLL 150
++ V C +LLL+ G*T + N K + L+W +
Sbjct: 141 ESSVCYPCYVTMLLLIFG*TCCVRMNLKILKLMWCI 34
>TC14970 similar to UP|O24294 (O24294) Legumin (Minor small) precursor,
partial (51%)
Length = 1566
Score = 25.4 bits (54), Expect = 8.3
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -1
Query: 158 LDSWSWGGMRLAFLYEPL--SLTSDSSVASRGGYMTLFVVIFVFL 200
L S SW F + PL SL+ S +S +F++IFV L
Sbjct: 735 LSSSSWSTFFTLFFFFPLEMSLSFSRSTSSSLSLFFIFILIFVLL 601
>AV765411
Length = 594
Score = 25.4 bits (54), Expect = 8.3
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = -3
Query: 120 LACIKALLLLLLG*TIFLGKNNKNM-NLIWLLALQDMDELDSWSWGGMRLAFL-YEPLSL 177
L C + L L++ +F + K + ++ LAL WS +L FL + + +
Sbjct: 322 LHCFEFQLTLIMNWDLFSIR*GKQVFGILSFLALMKGGSFILWS---KKLFFLPFHDMPV 152
Query: 178 TSDSSVASRGGY-MTLFVVIFVFLLFYL 204
D + SR Y + LF+V+ +L FYL
Sbjct: 151 YRDIMIESRLIY*IYLFIVLINYLFFYL 68
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.328 0.143 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,298,932
Number of Sequences: 28460
Number of extensions: 63022
Number of successful extensions: 455
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of query: 225
length of database: 4,897,600
effective HSP length: 87
effective length of query: 138
effective length of database: 2,421,580
effective search space: 334178040
effective search space used: 334178040
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)
Medicago: description of AC146567.15