BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146565.7 + phase: 0 /pseudo
(508 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP065719 54 8e-08
AU251673 40 0.001
CN825556 38 0.004
TC17283 similar to UP|O65760 (O65760) Extensin (Fragment), parti... 37 0.010
TC8445 similar to UP|O80910 (O80910) At2g38410 protein, partial ... 36 0.017
TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycop... 36 0.017
TC15341 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich pro... 35 0.029
TC9116 similar to UP|Q9ZW85 (Q9ZW85) 3-isopropylmalate dehydrata... 35 0.038
TC19410 weakly similar to AAR24668 (AAR24668) At1g24040, partial... 35 0.038
TC9411 similar to UP|Q41102 (Q41102) Phaseolin G-box binding pro... 34 0.065
TC16458 similar to UP|O48679 (O48679) F3I6.5 protein, partial (20%) 34 0.065
TC15534 weakly similar to GB|AAO63420.1|28950993|BT005356 At5g28... 33 0.084
AV419448 33 0.11
TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment),... 33 0.14
TC15229 weakly similar to UP|O60585 (O60585) Ser/Arg-related nuc... 32 0.25
TC15425 similar to UP|GRP2_PHAVU (P10496) Glycine-rich cell wall... 32 0.25
TC14277 similar to UP|Q9SHY3 (Q9SHY3) F1E22.9 (AT1G65720/F1E22_1... 32 0.25
TC15380 similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 protein, par... 32 0.32
TC17863 homologue to PIR|S44027|S44027 thioredoxin-disulfide red... 32 0.32
TC10717 similar to UP|Q8S564 (Q8S564) 4-coumarate:coenzyme A lig... 32 0.32
>BP065719
Length = 567
Score = 53.5 bits (127), Expect = 8e-08
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 2/128 (1%)
Frame = +3
Query: 176 QIPHKFKIPNFEKYKGNSCPE--EHLKMYVRRMPAYAQDDQVLIYYF*ESLAGPASKWYT 233
++P +K+P F K+ G+S EH+ Y A ++ + + YF SL A W+T
Sbjct: 159 ELPRGWKVPKFTKFSGDSGESTVEHIARYQIEAGDLAINENLKMKYFPSSLTKNAFTWFT 338
Query: 234 NLDKTKIQTFRDLYEAFVEQYNYNVDMAPDRSDLQAMTQGDKETFKEYAQRWRDIAAQVS 293
L + T+ L F EQ+ + + DL ++ + E+ +Y R+R + ++
Sbjct: 339 TLAPRSVHTWAQLERIFHEQF-FRGECKVSXKDLASVKRKPAESIDDYLNRFRMLKSRCF 515
Query: 294 PRIEEKEM 301
+ E E+
Sbjct: 516 THVSEHEL 539
>AU251673
Length = 413
Score = 40.0 bits (92), Expect = 0.001
Identities = 26/119 (21%), Positives = 54/119 (44%), Gaps = 5/119 (4%)
Frame = +2
Query: 224 LAGPASKWYTNLDKTKIQ-----TFRDLYEAFVEQYNYNVDMAPDRSDLQAMTQGDKETF 278
L G A WY L + K T+ D F+ ++ D + + Q + T
Sbjct: 44 LEGVARDWYNVLTRAKPVGSPPWTWADFSAEFMNRFLPQSVRDGFVRDFERLEQAEGMTV 223
Query: 279 KEYAQRWRDIAAQVSPRIEEKEMTKIFLKTLNQFYYERMVGSMPKNFAEMVGMGVQLEE 337
EY+ + ++ V + E+E K F++ L ++ ++ +VGS +E++ + + +E+
Sbjct: 224 SEYSAHFTHLSRYVPYPLLEEERVKRFVRGLKEYLFKSVVGSKSSTLSEVLSLALLVEQ 400
>CN825556
Length = 655
Score = 37.7 bits (86), Expect = 0.004
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +1
Query: 392 PATNAIQQPGYQPQFQQYPQQLYQQQQPRPQAQ-RTQFDPIPMKYADFLPALLEKNLVHT 450
P ++ QP QPQ Q PQ Q QP+PQ Q + Q P+P PA L + L+
Sbjct: 445 PPPPSLPQPQPQPQPQPQPQP---QPQPQPQPQPQPQPQPVPP------PASLPQPLLAP 597
Query: 451 RPPPKVPERLP 461
P P +PE+ P
Sbjct: 598 LPSPGLPEQKP 630
>TC17283 similar to UP|O65760 (O65760) Extensin (Fragment), partial (16%)
Length = 513
Score = 36.6 bits (83), Expect = 0.010
Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 13/103 (12%)
Frame = +1
Query: 32 PPP---------PPPFSTQAEASSSAIPDWTIYADTPTHSAPQRSAPWFQPFTAGEIFRP 82
PPP PPP S+ A +S+ IP W + T ++ S P PF+A P
Sbjct: 145 PPPATPSTLTTHPPPTSSSAFSSTLPIPRWNPPPPSRTPTSTYTSTP---PFSAAPNTSP 315
Query: 83 IACEAQMPTHQYVAHV----PPPPIKVPLAAMTYSAPVMHTIP 121
C + + PPPP VP+AA YSA +P
Sbjct: 316 PYCPTAGSASSILIRLRRKTPPPP--VPIAA-NYSASTSEFLP 435
Score = 29.3 bits (64), Expect = 1.6
Identities = 23/94 (24%), Positives = 34/94 (35%)
Frame = +1
Query: 33 PPPPPFSTQAEASSSAIPDWTIYADTPTHSAPQRSAPWFQPFTAGEIFRPIACEAQMPTH 92
PPPPP +T+ + P + TH P S+ A + +P
Sbjct: 94 PPPPPPTTKHSPETLQAPPPATPSTLTTHPPPTSSS---------------AFSSTLPIP 228
Query: 93 QYVAHVPPPPIKVPLAAMTYSAPVMHTIPQNEEP 126
++ PPPP + P + T S P P P
Sbjct: 229 RW---NPPPPSRTPTSTYT-STPPFSAAPNTSPP 318
>TC8445 similar to UP|O80910 (O80910) At2g38410 protein, partial (7%)
Length = 841
Score = 35.8 bits (81), Expect = 0.017
Identities = 25/61 (40%), Positives = 29/61 (46%), Gaps = 6/61 (9%)
Frame = +1
Query: 374 HGRPQ-QNYPAYQHVAAITPATNAIQQPGYQPQFQQYPQ-----QLYQQQQPRPQAQRTQ 427
H +PQ Q+ P QH+ P QP QPQ Q PQ Q QQ QP+PQ Q
Sbjct: 97 HPQPQLQSQPQPQHIQQSQP------QPQSQPQHIQQPQPQPQLQHIQQSQPQPQFQNQH 258
Query: 428 F 428
F
Sbjct: 259 F 261
Score = 30.8 bits (68), Expect = 0.55
Identities = 23/67 (34%), Positives = 27/67 (39%), Gaps = 13/67 (19%)
Frame = +1
Query: 371 MVAHGRPQ----QNYPAYQHVAAITPATNAIQQPGYQPQFQQYPQ---------QLYQQQ 417
M H PQ Q P QH QP + P FQ +PQ Q QQ
Sbjct: 7 MQLHNEPQPLQYQPQPHLQH------------QPQHHPHFQPHPQPQLQSQPQPQHIQQS 150
Query: 418 QPRPQAQ 424
QP+PQ+Q
Sbjct: 151 QPQPQSQ 171
>TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (57%)
Length = 941
Score = 35.8 bits (81), Expect = 0.017
Identities = 21/84 (25%), Positives = 32/84 (38%)
Frame = +1
Query: 32 PPPPPPFSTQAEASSSAIPDWTIYADTPTHSAPQRSAPWFQPFTAGEIFRPIACEAQMPT 91
P PPPP+ Q+ S P Y +P +P P++ ++ + P
Sbjct: 112 PSPPPPYYYQSPPPPSHSPPPPYYYKSPPPPSPSPPPPYY--------YKSPPPPSPSPP 267
Query: 92 HQYVAHVPPPPIKVPLAAMTYSAP 115
Y PPPP +P Y +P
Sbjct: 268 PPYYYKSPPPPSPIPHPPYYYKSP 339
Score = 33.9 bits (76), Expect = 0.065
Identities = 25/92 (27%), Positives = 36/92 (38%), Gaps = 8/92 (8%)
Frame = +1
Query: 32 PPPPPPFSTQAEASSSAIPDWTIY--ADTPTHSAPQRSAPWFQPFTAGEIFRPIACEAQ- 88
P PPPP+ ++ S IP Y + P S+P + P P A
Sbjct: 256 PSPPPPYYYKSPPPPSPIPHPPYYYKSPPPPTSSPPPPYHYVSPPPPSPSPPPPYHYASP 435
Query: 89 -----MPTHQYVAHVPPPPIKVPLAAMTYSAP 115
P Y+ PPPP+K+P Y++P
Sbjct: 436 PPPSPSPAPTYIYKSPPPPVKLPPPPYHYTSP 531
Score = 30.4 bits (67), Expect = 0.71
Identities = 21/84 (25%), Positives = 30/84 (35%)
Frame = +1
Query: 32 PPPPPPFSTQAEASSSAIPDWTIYADTPTHSAPQRSAPWFQPFTAGEIFRPIACEAQMPT 91
PPPPPP S P + Y +P +P P++ ++ + P
Sbjct: 22 PPPPPPVPKPYYYKSPPPPPY--YYKSPPPPSPSPPPPYY--------YQSPPPPSHSPP 171
Query: 92 HQYVAHVPPPPIKVPLAAMTYSAP 115
Y PPPP P Y +P
Sbjct: 172 PPYYYKSPPPPSPSPPPPYYYKSP 243
>TC15341 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich protein,
partial (33%)
Length = 1002
Score = 35.0 bits (79), Expect = 0.029
Identities = 24/56 (42%), Positives = 25/56 (43%), Gaps = 2/56 (3%)
Frame = +1
Query: 377 PQQNYPAYQHVAAITPATNAIQQPGYQPQFQQYPQQLYQQQQPR--PQAQRTQFDP 430
P Q YP YQ QQ Q Q QQ+PQQL QQ QP P Q Q P
Sbjct: 832 PVQQYPQYQQPQ---------QQQQQQQQQQQWPQQLPQQVQPTQPPSMQSPQIRP 972
Score = 29.6 bits (65), Expect = 1.2
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = +1
Query: 377 PQQNY--PAYQHVAAITP--ATNAIQQPGYQPQFQQYPQQLYQQQQPRPQAQRTQFDPIP 432
P Q Y P Q ++ + P TN P QQYPQ QQQ + Q Q+ Q+
Sbjct: 739 PDQQYRTPQMQDMSRVAPQPCTNX-SGXSPPPPVQQYPQYQQPQQQQQQQQQQQQW---- 903
Query: 433 MKYADFLPALLEKNLVHTRPP 453
P L + + T+PP
Sbjct: 904 -------PQQLPQQVQPTQPP 945
>TC9116 similar to UP|Q9ZW85 (Q9ZW85) 3-isopropylmalate dehydratase, small
subunit, partial (25%)
Length = 426
Score = 34.7 bits (78), Expect = 0.038
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Frame = +1
Query: 18 LSELVKVLSTAQNQPPPPP---PFSTQAEASSSAIPDWTIYADTPTHSAPQRSAPWFQPF 74
LS L K + PPPPP P + A A+SSA TPT S+P +P P
Sbjct: 160 LSPLTKSHAPTLLLPPPPPNPQPHPSTASATSSAT------TSTPTRSSPPSISPSSLP- 318
Query: 75 TAGEIFRPIACEAQMPTHQYVAHVPPPP 102
P + + PT + P PP
Sbjct: 319 ------TPTSTRSSAPTPSSASPPPTPP 384
>TC19410 weakly similar to AAR24668 (AAR24668) At1g24040, partial (28%)
Length = 606
Score = 34.7 bits (78), Expect = 0.038
Identities = 17/46 (36%), Positives = 23/46 (49%)
Frame = +1
Query: 22 VKVLSTAQNQPPPPPPFSTQAEASSSAIPDWTIYADTPTHSAPQRS 67
+K + A + PPPPPP ST+ S S P + TH+ P S
Sbjct: 85 LKTSTPASSPPPPPPPISTKPVHSLSQQPPTQTHFPVSTHTLPPPS 222
>TC9411 similar to UP|Q41102 (Q41102) Phaseolin G-box binding protein PG2
(Fragment), partial (30%)
Length = 705
Score = 33.9 bits (76), Expect = 0.065
Identities = 19/61 (31%), Positives = 33/61 (53%), Gaps = 4/61 (6%)
Frame = +2
Query: 1 LKTKIEELESMKTNM----DELSELVKVLSTAQNQPPPPPPFSTQAEASSSAIPDWTIYA 56
LKTK++ ES KT + D + + ++ S + P PPPP ++ +SSS+ + +
Sbjct: 323 LKTKLQSSESDKTGLQKQFDAMKKELEKTSEQSSSPTPPPPNKNKSFSSSSSSSNQILVE 502
Query: 57 D 57
D
Sbjct: 503 D 505
>TC16458 similar to UP|O48679 (O48679) F3I6.5 protein, partial (20%)
Length = 539
Score = 33.9 bits (76), Expect = 0.065
Identities = 28/109 (25%), Positives = 43/109 (38%), Gaps = 8/109 (7%)
Frame = -3
Query: 30 NQPPPPPPFSTQAEASSSAIPDWTIYADTPTHSAPQRSAP----WFQPFTAGEIFRPIAC 85
+QPPPPPP +T A P + P S P P P P
Sbjct: 372 SQPPPPPP-NTSPAADDLPTPPHMHNSSQPLSSTPSHYYPPNH*TPNPPPPPNTISPSCA 196
Query: 86 EAQ---MPTHQYVAHVPPPPIKVPLAAMTYSAPV-MHTIPQNEEPIFHS 130
A+ P+ + H P P K + + P +H++P++ +PI+ S
Sbjct: 195 PAKHPPPPSLHHHHHRPSPTPKSTCHMLLNTTPTHLHSVPKHSQPIYAS 49
>TC15534 weakly similar to GB|AAO63420.1|28950993|BT005356 At5g28040
{Arabidopsis thaliana;}, partial (8%)
Length = 937
Score = 33.5 bits (75), Expect = 0.084
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = -3
Query: 26 STAQNQPPPPPPFSTQAEASSSAIPDWTIYADTPTHSAPQRSAPWFQPFTAGEIFRPIAC 85
+T+ +PP P P S A S S +DT + AP SAP T +P+A
Sbjct: 686 TTSHTKPPQPEPESDSATQSDSE-------SDTDSDQAPSASAP-----TPNPKVKPLAT 543
Query: 86 EA--QMPTHQYVAHVPPPPIK 104
+ Q TH+ A P P K
Sbjct: 542 KPMDQTQTHKPKAQPSPAPAK 480
>AV419448
Length = 382
Score = 33.1 bits (74), Expect = 0.11
Identities = 26/89 (29%), Positives = 36/89 (40%)
Frame = +2
Query: 33 PPPPPFSTQAEASSSAIPDWTIYADTPTHSAPQRSAPWFQPFTAGEIFRPIACEAQMPTH 92
PP PP T + +S++ P + TP+ P SA TA P P+
Sbjct: 95 PPTPPSPTASSWTSASAPPPSSPTATPSAPTPPLSAALSLASTATS--SPSPSPISNPSA 268
Query: 93 QYVAHVPPPPIKVPLAAMTYSAPVMHTIP 121
PPPP K P + T S+P + P
Sbjct: 269 SLPPTPPPPPTKTP--SSTSSSPAATSSP 349
>TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment), partial
(79%)
Length = 1017
Score = 32.7 bits (73), Expect = 0.14
Identities = 26/101 (25%), Positives = 36/101 (34%)
Frame = +3
Query: 30 NQPPPPPPFSTQAEASSSAIPDWTIYADTPTHSAPQRSAPWFQPFTAGEIFRPIACEAQM 89
+ PPPPPP +S P H+ P + P P
Sbjct: 357 HSPPPPPPKKHYKYSSPPP----------PVHTYPHPHPVYHSP-------PPPVHTYPH 485
Query: 90 PTHQYVAHVPPPPIKVPLAAMTYSAPVMHTIPQNEEPIFHS 130
P Y + PPPP + P + P +HT P P++HS
Sbjct: 486 PHPVYHSPPPPPPHEKPYKYASPPPPPVHTYP---HPVYHS 599
Score = 32.0 bits (71), Expect = 0.25
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 14/113 (12%)
Frame = +3
Query: 32 PPPPPPFSTQAEASSSAIPDWTIYADTPTHSAP----QRSAPWFQPFTAGEIFRPIACEA 87
PPPP P+S + P P + +P ++ P + +P +
Sbjct: 126 PPPPKPYSYHSPPPPVHSPPPPYEKPHPVYHSPPPPYEKPHPVYHSPPPPPPHKPYKYPS 305
Query: 88 -QMPTHQY-------VAHVPPPPIKVPLAAMTYSA--PVMHTIPQNEEPIFHS 130
P H+Y V H PPPP P YS+ P +HT P + P++HS
Sbjct: 306 PPPPPHKYPHPHPHPVYHSPPPP--PPKKHYKYSSPPPPVHTYP-HPHPVYHS 455
Score = 32.0 bits (71), Expect = 0.25
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +3
Query: 90 PTHQYVAHVPPPPIKVPLAAMTYSAPVMHTIP---QNEEPIFHS 130
P Y H PPPP+ P PV H+ P + P++HS
Sbjct: 132 PPKPYSYHSPPPPVHSPPPPYEKPHPVYHSPPPPYEKPHPVYHS 263
Score = 30.4 bits (67), Expect = 0.71
Identities = 30/110 (27%), Positives = 40/110 (36%), Gaps = 13/110 (11%)
Frame = +3
Query: 33 PPPPPFSTQAEASSSAIPDWT------IYADTP--THSAPQRSAPWFQPFTAGEIFRPI- 83
PPPPP + SS P T +Y P H+ P + P +P
Sbjct: 363 PPPPPPKKHYKYSSPPPPVHTYPHPHPVYHSPPPPVHTYPHPHPVYHSPPPPPPHEKPYK 542
Query: 84 -ACEAQMPTHQY---VAHVPPPPIKVPLAAMTYSAPVMHTIPQNEEPIFH 129
A P H Y V H PPPP+ +S P H ++ P +H
Sbjct: 543 YASPPPPPVHTYPHPVYHSPPPPV--------HSPPPPHYYYKSPPPPYH 668
Score = 26.9 bits (58), Expect = 7.9
Identities = 19/72 (26%), Positives = 24/72 (32%)
Frame = +3
Query: 30 NQPPPPPPFSTQAEASSSAIPDWTIYADTPTHSAPQRSAPWFQPFTAGEIFRPIACEAQM 89
+ PPPPPP + +S P Y HS P P+ +
Sbjct: 501 HSPPPPPPHEKPYKYASPPPPPVHTYPHPVYHSPPP----------------PV--HSPP 626
Query: 90 PTHQYVAHVPPP 101
P H Y PPP
Sbjct: 627 PPHYYYKSPPPP 662
>TC15229 weakly similar to UP|O60585 (O60585) Ser/Arg-related nuclear matrix
protein, partial (4%)
Length = 965
Score = 32.0 bits (71), Expect = 0.25
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Frame = -3
Query: 28 AQNQPPPPPPFSTQAEASSSAIPDWTIYADTPTHSAPQRSAPWFQPFTAGEIFRPIACEA 87
A++ PPPPPP S A S+A AP+R P + G IF ++ A
Sbjct: 558 AESAPPPPPPPSVTAPIPSTA------------KEAPRRRTP-----SHGLIFSILSSPA 430
Query: 88 QMPT--HQYVAHVPP------PPIKVPLAAMTYSAP 115
P+ + H PP PP P T+ +P
Sbjct: 429 SAPSARGRRTQHNPPEPGRGAPPSPKPSPHRTFQSP 322
>TC15425 similar to UP|GRP2_PHAVU (P10496) Glycine-rich cell wall structural
protein 1.8 precursor (GRP 1.8), partial (6%)
Length = 667
Score = 32.0 bits (71), Expect = 0.25
Identities = 24/86 (27%), Positives = 34/86 (38%), Gaps = 5/86 (5%)
Frame = +2
Query: 58 TPTHSAPQRSAPWFQPFTAGEIFRPIACEAQMPTHQY----VAHVPPPPIKV-PLAAMTY 112
TP + QRS P + A + +P + + H PPPP ++ P +A Y
Sbjct: 8 TPYYQPDQRSDTQTNPSRPQTPYYQSAEQPPVPAYGHHPPPYGHQPPPPYQIPPTSAAPY 187
Query: 113 SAPVMHTIPQNEEPIFHSGNMEAYDG 138
P +H P P H AY G
Sbjct: 188 PPPQVHQQP----PASHEYGQPAYPG 253
>TC14277 similar to UP|Q9SHY3 (Q9SHY3) F1E22.9 (AT1G65720/F1E22_13), partial
(33%)
Length = 941
Score = 32.0 bits (71), Expect = 0.25
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Frame = +3
Query: 26 STAQNQPPPPPPFSTQAEASSSAIPDWTIYADTPTHSAPQR-----SAPWFQPFTAGEIF 80
S++ + PPPPP + A +SS P T+ TP+ +P+ S P T+
Sbjct: 105 SSSSSPSPPPPPHAPAAASSSPPTPSATL-PPTPSPPSPRSDPSPLSTSTTNPTTSSSTT 281
Query: 81 RPIACEAQMPTHQYVAHVPP---PPIKVPLAAMTYSAP 115
P ++H P PP+ + + +AP
Sbjct: 282 PKTTTNKSNPNTARLSHAAP*GSPPLLTTTSPPSVTAP 395
>TC15380 similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 protein, partial (28%)
Length = 1306
Score = 31.6 bits (70), Expect = 0.32
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Frame = +2
Query: 26 STAQNQPPPPPPFS--TQAEASSSAIPDWTIYADTPTHS--APQRSAPWFQPFTAGEIFR 81
S + + PP P P + T ++S+ + TP S +P ++PW P T+G
Sbjct: 119 SPSSSSPPSPTPLAAPTAPSTAASSTSSTARFPQTPNPSTASPPPTSPWTPPATSG---- 286
Query: 82 PIACEAQMPTHQYVAHVPPPPIKVPLAAMTYS 113
A +P PPPP P ++ S
Sbjct: 287 ----SASLPP-------PPPPPPRPFPSLCSS 349
>TC17863 homologue to PIR|S44027|S44027 thioredoxin-disulfide reductase 2
[validated] - Arabidopsis thaliana
{Arabidopsis thaliana;} , partial (19%)
Length = 334
Score = 31.6 bits (70), Expect = 0.32
Identities = 29/88 (32%), Positives = 40/88 (44%), Gaps = 6/88 (6%)
Frame = +3
Query: 32 PPPPPPF-----STQAEASSSAIPDWTIYADT-PTHSAPQRSAPWFQPFTAGEIFRPIAC 85
PPPPPP+ S + ASS A+P T T P S+ Q S+ P T+ P A
Sbjct: 93 PPPPPPWLTTRSSKPSSASSEAVPPPTPPPSTPPAPSSNQSSSKAGWPTTS----PPAAN 260
Query: 86 EAQMPTHQYVAHVPPPPIKVPLAAMTYS 113
PT + + P +K AA ++S
Sbjct: 261 SPPPPT----SRISPASLKASWAASSWS 332
>TC10717 similar to UP|Q8S564 (Q8S564) 4-coumarate:coenzyme A ligase ,
partial (32%)
Length = 691
Score = 31.6 bits (70), Expect = 0.32
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +3
Query: 32 PPPPPPFSTQAEASSSAIPDWTIYADTPTHSAPQRSAPWFQ 72
PPPPPP + S +PD I P HS + P FQ
Sbjct: 90 PPPPPPQDEEQFIFRSKLPDIPIPTHLPLHSYIFENLPRFQ 212
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,898,689
Number of Sequences: 28460
Number of extensions: 147377
Number of successful extensions: 2987
Number of sequences better than 10.0: 163
Number of HSP's better than 10.0 without gapping: 1966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2648
length of query: 508
length of database: 4,897,600
effective HSP length: 94
effective length of query: 414
effective length of database: 2,222,360
effective search space: 920057040
effective search space used: 920057040
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC146565.7