BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146564.8 - phase: 0 /pseudo
(430 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV767121 142 8e-35
AV780221 119 1e-27
BP041113 98 2e-21
TC13572 74 1e-14
AV780705 63 8e-11
AV412895 63 8e-11
AU089037 62 1e-10
BP056597 62 1e-10
BP078534 50 5e-07
BP060613 49 1e-06
AV414139 44 7e-05
AV411435 43 1e-04
TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%) 41 3e-04
CN825238 37 0.006
AV777945 37 0.006
CB828232 37 0.008
BP028574 35 0.031
BP085058 34 0.053
AU089120 33 0.069
BE122611 26 0.11
>AV767121
Length = 525
Score = 142 bits (359), Expect = 8e-35
Identities = 72/187 (38%), Positives = 103/187 (54%)
Frame = +2
Query: 77 LNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRVVRIQREFLWGGVNGGKK 136
L+ W K VS GGR+ L+ +VL A+P F+L+FFKLP+ V K VR+ R FLWGG K
Sbjct: 2 LSKWKQKTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENK 181
Query: 137 VCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQPL*KDVLRCKYGSRINF 196
+ VKW VC P++ GGLG++D+ N +LL K RWR + L + V+ +
Sbjct: 182 IA*VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEAQ------- 340
Query: 197 LLDPIYNSWSSLASRWWLDLMSLEGVVGANWFNREMVRKVGNGETTRFWLDHWVGNEALY 256
S S WW D++SL WF+ + + VG G+ T+FW + W+G+ L
Sbjct: 341 ------PDHYSCGSSWWNDILSLCPEDADGWFSSGLKKLVGEGDQTKFWSEDWLGSGLLS 502
Query: 257 LTFPRLF 263
F RL+
Sbjct: 503 ARFRRLY 523
>AV780221
Length = 461
Score = 119 bits (298), Expect = 1e-27
Identities = 66/163 (40%), Positives = 91/163 (55%), Gaps = 4/163 (2%)
Frame = +3
Query: 93 LLNAVLNAIPNFYLAFFKLPVK-VWKRVVRIQREFLWGGVNGGKKVCWVKWATVCLPRDK 151
L+ +VL A+P F+L FFKLP + V F V GGKK+ WVKW+TVC P+D+
Sbjct: 9 LIRSVLIALPLFHLPFFKLPTGGFYTNVNN**DPFFGREVEGGKKIAWVKWSTVCRPKDE 188
Query: 152 GGLGVRDMKLVNISLLAKWRWRLVQPEQPL*KDVLRCKYGSRINFLLDPIYNSWSSLASR 211
GGLGV+++ L N +LL KWRWR+++ L VL KY N+ AS
Sbjct: 189 GGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVLLIKY-----------KNAIPQSASS 335
Query: 212 WWLDLMSL---EGVVGANWFNREMVRKVGNGETTRFWLDHWVG 251
WW DL S +G G W R + R++G G +FW ++W+G
Sbjct: 336 WWNDLHSTCFEDG--GGGWMQRGLCRRIGEGTEVKFWNENWLG 458
>BP041113
Length = 503
Score = 98.2 bits (243), Expect = 2e-21
Identities = 61/173 (35%), Positives = 95/173 (54%), Gaps = 5/173 (2%)
Frame = +1
Query: 244 FWLDHWVGNEALYLTFPRLFSISSQKEAMVGEV--WVDG--DWNLTWRRSLFVWEEGLIH 299
FW + W+G L + RLF++S +K + E W G W L+WRR+L E G +
Sbjct: 1 FWTEDWIGMGTLRDRYYRLFNLSKEKRCCILECGGWNHGVWTWKLSWRRALVGRELGWLE 180
Query: 300 ILLDELEGREVSEPM-DSWWWKLEEGGICSVSSSYSLHVKLQMPPEPLENTKAMVFGSVW 358
+++ +L G +SE + D W W GG +V+S+YS LQ P L +T +F ++W
Sbjct: 181 LMMKDLSGVCLSEGVEDKWLWL--PGGTYTVNSAYSF---LQAPT--LADTDP-IFATIW 336
Query: 359 KSPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQVGETAAHL 411
++ P V F+W+ LL R+PT DNL+KR+++ + C FC E+ HL
Sbjct: 337 RTVAP-SVKAFAWRCLLGRLPTYDNLIKRQVVVDPAMTVCKFCQGEVESVTHL 492
>TC13572
Length = 534
Score = 73.9 bits (180), Expect(2) = 1e-14
Identities = 50/144 (34%), Positives = 73/144 (49%), Gaps = 7/144 (4%)
Frame = -3
Query: 210 SRWWLDLMSLEGVVGAN-WFNREMVRKVGNGETTRFWLDHWVGNEALYLTFPRLFSISSQ 268
S WW D+ + G G N WF + + + +G TRFWL++W G L + RL+++S
Sbjct: 427 SSWWRDVQTAGG--GENGWFEEGVHKVLRSGNHTRFWLENWTGVGILREKYYRLYNLSKL 254
Query: 269 KEAMVGEV--WVDGDWN--LTWRRSLFVWE-EGLIHILLDELEGREVSEPMDSWWWKLEE 323
K A + E W G WN WRR L E + L + LD + ++ D W WK E
Sbjct: 253 KWASIDECGGWSQGVWNWDFRWRRPLAGRELDWLQALSLDIVRVPLLAGVPDKWVWKPSE 74
Query: 324 GGICSVSSSY-SLHVKLQMPPEPL 346
G SV+S++ L V + PP P+
Sbjct: 73 DGSYSVNSAFIFLQVPSEQPPNPI 2
Score = 22.3 bits (46), Expect(2) = 1e-14
Identities = 8/12 (66%), Positives = 9/12 (74%)
Frame = -1
Query: 163 NISLLAKWRWRL 174
N +LL KW WRL
Sbjct: 534 NKALLGKWLWRL 499
>AV780705
Length = 524
Score = 63.2 bits (152), Expect = 8e-11
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 3/146 (2%)
Frame = -2
Query: 48 PFQYLGLPV--GANPRRLSTWEPLLDVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFY 105
P YLGLP G N W + + +K++L W ++ G+ VL+ A++ AIP++
Sbjct: 493 PGHYLGLPAIWGRNKSHSLVW--IEEKVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYA 320
Query: 106 LAFFKLPVKVWKRVVRIQREFLWGGVN-GGKKVCWVKWATVCLPRDKGGLGVRDMKLVNI 164
+ P + + +F W G + L ++KGG+G RD++ N+
Sbjct: 319 MTIVHFPKTFCNSLYALVADFWWKSQGEGAVEYTGAVGTK*PLSKEKGGVGFRDLRTQNL 140
Query: 165 SLLAKWRWRLVQPEQPL*KDVLRCKY 190
+ LA+ WR++ + L V++ Y
Sbjct: 139 AFLARQAWRVLTNPEALWVRVMKSLY 62
>AV412895
Length = 405
Score = 63.2 bits (152), Expect = 8e-11
Identities = 35/108 (32%), Positives = 49/108 (44%)
Frame = +1
Query: 323 EGGICSVSSSYSLHVKLQMPPEPLENTKAMVFGSVWKSPTPFKVVVFSWQSLLDRIPTKD 382
+GG SS L + P+P VF +W P P + F W+ LL RI T+D
Sbjct: 1 QGGFSVNSSFVFL*DQYLEEPDP-------VFN*IWMVPAPLNIKAFVWRVLLGRIQTRD 159
Query: 383 NLLKRRILPTESSVRCVFCDQVGETAAHLFLHCDMSFKVWSMVYCRLG 430
NLLKR+++ C C E+ +HL C S +W + LG
Sbjct: 160 NLLKRQVIHNALDAICPLCGLAEESGSHLLFSCAESMLIWYECFAWLG 303
>AU089037
Length = 245
Score = 62.4 bits (150), Expect = 1e-10
Identities = 23/67 (34%), Positives = 40/67 (59%)
Frame = -1
Query: 353 VFGSVWKSPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQVGETAAHLF 412
+F +WK P P V F+W+ +LDR+ T+ NL +R+++ C C Q E+++HLF
Sbjct: 203 IFQKLWKVPAPSNAVSFAWRLILDRVQTRGNLRRRQVIQQSEEALCPMCSQCEESSSHLF 24
Query: 413 LHCDMSF 419
C +++
Sbjct: 23 FSCPLAW 3
>BP056597
Length = 414
Score = 62.4 bits (150), Expect = 1e-10
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 7/139 (5%)
Frame = +3
Query: 258 TFPRLFSISSQKEAMVGEV--WVDGDW--NLTWRRSLF---VWEEGLIHILLDELEGREV 310
TF LF IS+Q+ + E+ W++ W + +W+ + V + G++ ++ +
Sbjct: 6 TFDSLFLISNQQNCKIVEMGHWLENKWVWDFSWKNPISGEDVLKLGVMKQIVSSFS--LI 179
Query: 311 SEPMDSWWWKLEEGGICSVSSSYSLHVKLQMPPEPLENTKAMVFGSVWKSPTPFKVVVFS 370
+ D+W W LE G SV S+Y L L VF +WK+ P V
Sbjct: 180 NGKKDTWVWILEGDGQYSVKSAYDLLSGLDT------TIGISVFSKLWKACAPSNAVALG 341
Query: 371 WQSLLDRIPTKDNLLKRRI 389
W+ LDRI TKDNL +R +
Sbjct: 342 WRVFLDRIQTKDNLSRRHV 398
>BP078534
Length = 410
Score = 50.4 bits (119), Expect = 5e-07
Identities = 27/62 (43%), Positives = 35/62 (55%), Gaps = 4/62 (6%)
Frame = -3
Query: 245 WLDHWVGNEALYLTFPRLFSISSQKEAMVGEVWV----DGDWNLTWRRSLFVWEEGLIHI 300
WLD W+ AL FPRLF++ K A+V +V WNL++RR F WEE IH+
Sbjct: 216 WLDPWIRERALCDMFPRLFTLCENKGALVADVGSYHGGSWHWNLSFRREFFQWEEE-IHL 40
Query: 301 LL 302
L
Sbjct: 39 QL 34
>BP060613
Length = 378
Score = 49.3 bits (116), Expect = 1e-06
Identities = 24/71 (33%), Positives = 38/71 (52%)
Frame = +1
Query: 127 LWGGVNGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQPL*KDVL 186
+W G + V W KW + +D+GGLG +D ++ N +LLAK WR++ L +L
Sbjct: 43 VWWSSKGTRGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQIL 222
Query: 187 RCKYGSRINFL 197
+ Y +FL
Sbjct: 223 KALYFPHHDFL 255
>AV414139
Length = 309
Score = 43.5 bits (101), Expect = 7e-05
Identities = 30/102 (29%), Positives = 47/102 (45%), Gaps = 3/102 (2%)
Frame = -2
Query: 277 WVDG--DWNLTWRRSLFVWEEGLIHILLDELEGREVSEPM-DSWWWKLEEGGICSVSSSY 333
W +G +W WRR L V E+ L+ L G + + D W W L+ I +V S+Y
Sbjct: 290 WHNGVWEWEFRWRRELSVREQRQEADLIQALAGVCLQQGTEDRWKWTLDTEDIYTVRSAY 111
Query: 334 SLHVKLQMPPEPLENTKAMVFGSVWKSPTPFKVVVFSWQSLL 375
L + +P+ ++ + V+ VW P F W+ LL
Sbjct: 110 *LLL------DPIADSDSEVYEKVWVGIAPSNANAFVWRLLL 3
>AV411435
Length = 426
Score = 42.7 bits (99), Expect = 1e-04
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Frame = +3
Query: 315 DSWWWKLEEGGICSVSSSYSLHVKLQMPPEPLENTKA----MVFGSVWKSPTPFKVVVFS 370
D +W G SV S Y Q L ++ + ++ ++W + P KV F
Sbjct: 39 DRLFWPFIPSGEYSVKSGYRAVKATQFNLSNLASSSSHPSSFLWHTIWGAQVPKKVRSFL 218
Query: 371 WQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQVGETAAHLFLHCDMSFKVW 422
W++ + IP K N LKRR + + C C++ E H L C+ + VW
Sbjct: 219 WRAANNAIPVKRN-LKRRNMGRDDF--CPICNKGPEDINHALLACEWTRAVW 365
>TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)
Length = 912
Score = 41.2 bits (95), Expect = 3e-04
Identities = 28/95 (29%), Positives = 47/95 (49%)
Frame = -3
Query: 4 LLRGFEMASGLKVNFAKSCLIGVNVGREFMDAACNFMNCREGSPPFQYLGLPVGANPRRL 63
+L F+ SGL N AKS + + V + N + +EG P + LG+P +
Sbjct: 295 VLHIFQHLSGLTPNPAKSEVF-ILVKETTKNQITNMLGYKEGKLPVR*LGVPQLTTKLKA 119
Query: 64 STWEPLLDVLKKRLNSWGNKYVSLGGRVVLLNAVL 98
S + L+D +L W + +S GR+ L+N++L
Sbjct: 118 SDCKVLVDRKPSKLQHWTGRSLSYAGRLQLINSIL 14
>CN825238
Length = 692
Score = 37.0 bits (84), Expect = 0.006
Identities = 27/101 (26%), Positives = 50/101 (48%), Gaps = 4/101 (3%)
Frame = +3
Query: 315 DSWWWKLEEGGICSVSSSYSLHVKLQMPPEPLENTKA---MVFGSVWKSPTPFKVVVFSW 371
+S W+ G SV S+Y +Q+ E ++ A + +W++P P K+ F++
Sbjct: 408 NSCLWRWSRNGAFSVRSAY---YNIQVAKEMQTSSSAASSFPWKKLWRTPVPNKMKHFAY 578
Query: 372 QSLLDRIPTKDNLLKRRILPTESSVRCVFCD-QVGETAAHL 411
+ + IP ++NL +R I C C+ Q+ E+ +HL
Sbjct: 579 RVARNIIPCRENLQRRGIAVQN---ECPTCNHQIPESMSHL 692
>AV777945
Length = 279
Score = 37.0 bits (84), Expect = 0.006
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 353 VFGSVWKSPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSV 396
+F +W S P + +W L+ ++ TKD L KR ++P+ + V
Sbjct: 148 LFDFLWASKAPSNSLALAWNVLIKKLQTKDELRKRNVIPSGTDV 279
>CB828232
Length = 532
Score = 36.6 bits (83), Expect = 0.008
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +1
Query: 88 GGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRVVRIQREFLWG 129
G RV VL+++P F+L+FFK+ V K +IQ FLWG
Sbjct: 409 GARVCCFKMVLSSLPLFFLSFFKIKC-VAKVCKQIQSRFLWG 531
>BP028574
Length = 454
Score = 34.7 bits (78), Expect = 0.031
Identities = 19/66 (28%), Positives = 32/66 (47%), Gaps = 1/66 (1%)
Frame = +3
Query: 315 DSWWWKLEEGGICSVSSSYS-LHVKLQMPPEPLENTKAMVFGSVWKSPTPFKVVVFSWQS 373
DSW W + G +V S+Y LH ++Q + F +W+S P + +W+
Sbjct: 261 DSWVWIKDGSGSFTVKSAYEELHGEIQ-------EIEDNFFRKLWQSKAPSNSIALAWRV 419
Query: 374 LLDRIP 379
L+R+P
Sbjct: 420 GLNRVP 437
>BP085058
Length = 452
Score = 33.9 bits (76), Expect = 0.053
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 90 RVVLLNAVLNAIPNFYLAFFKLPVKVWKRVVRIQREFLWGGVNGGKKVCW 139
R+ L VL+AI + + LP + ++ + R F+W VNG V W
Sbjct: 254 RLTLAKPVLSAISMYVMQLNWLPQSICDQICTVVRHFVWENVNGIPLVAW 403
>AU089120
Length = 586
Score = 33.5 bits (75), Expect = 0.069
Identities = 18/43 (41%), Positives = 24/43 (54%)
Frame = +2
Query: 384 LLKRRILPTESSVRCVFCDQVGETAAHLFLHCDMSFKVWSMVY 426
L +RRI+ T SS FC E+ HLF C S+ +WS V+
Sbjct: 8 LKRRRIIQTLSS----FCLHSEESIPHLFFRCFQSWNLWSSVH 124
>BE122611
Length = 357
Score = 25.8 bits (55), Expect(2) = 0.11
Identities = 11/30 (36%), Positives = 15/30 (49%)
Frame = -2
Query: 394 SSVRCVFCDQVGETAAHLFLHCDMSFKVWS 423
SS C+ C E A H+F C S +W+
Sbjct: 125 SSAACIRCGAPSEDANHVFRWCPGSAWMWT 36
Score = 25.8 bits (55), Expect(2) = 0.11
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -3
Query: 319 WKLEEGGICSVSSSYSLHVKLQMPPEPLENTKAMVFGSVWKSPTPFKVVVFSW 371
W E G S S+Y+L ++ ++ + VWK+ P KV F W
Sbjct: 319 WTEESNGCYSAKSTYNLLIEDG-------GNESRFWSLVWKANAPEKVRFFLW 182
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.325 0.141 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,398,015
Number of Sequences: 28460
Number of extensions: 187156
Number of successful extensions: 1323
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of query: 430
length of database: 4,897,600
effective HSP length: 93
effective length of query: 337
effective length of database: 2,250,820
effective search space: 758526340
effective search space used: 758526340
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Medicago: description of AC146564.8