BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146563.5 - phase: 0
(1436 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV767093 184 9e-47
CB828089 171 6e-43
CB829290 154 9e-38
BI420290 117 2e-26
AV416701 115 6e-26
AV781263 112 5e-25
AU089009 101 7e-22
AU089197 75 3e-20
BP033858 96 4e-20
AV776921 79 4e-15
BP055390 76 4e-14
TC11559 similar to UP|Q9SXT3 (Q9SXT3) Multidrug resistance prote... 68 9e-12
TC11425 similar to UP|Q9M1Q9 (Q9M1Q9) P-glycoprotein-like proeti... 68 1e-11
BG662257 64 2e-10
AV411197 64 2e-10
AV418106 60 2e-09
AV413975 53 4e-07
AV418183 53 4e-07
TC13598 similar to UP|Q9M1Q9 (Q9M1Q9) P-glycoprotein-like proeti... 47 2e-05
BG662269 44 2e-05
>AV767093
Length = 603
Score = 184 bits (467), Expect = 9e-47
Identities = 93/201 (46%), Positives = 124/201 (61%)
Frame = +1
Query: 1056 RAFNMVDRLMKYYLKLVDTDATLFFHSNVAMEWMVIRIEALQTLTVITAALLLILLPHGY 1115
R F + + V+ + FH+N A EW+ R++ + + + + +I LP
Sbjct: 1 RGFRKQGEFCQENIDRVNASLRMDFHNNGANEWLGYRLDFTGVVFLCISTMFMIFLPSSI 180
Query: 1116 VSPGLVGLSLSYAFNLTGAQIFWTRWFSTLSNNIISVERIKQFIDIPAEPPAIMEDNRPP 1175
V P VGLSLSY L+ F + N ++SVERIKQF ++P+E P + D PP
Sbjct: 181 VRPEYVGLSLSYGLALSSVLSFTISMTCNVENKMVSVERIKQFTNLPSEAPWKIPDLSPP 360
Query: 1176 SPWPSKGRIEVQGLEIRYRPNAPLVLKGITCTFNEGSRVGVVGRTGSGKSTLISALFRLV 1235
WP+ G IE+ L++RYRPN PLVLKGI+ T G ++GVVGRTGSGKSTLI LFRL+
Sbjct: 361 QNWPNHGSIELNSLQVRYRPNTPLVLKGISLTVQGGEKIGVVGRTGSGKSTLIQVLFRLI 540
Query: 1236 EPSRGDIIIDGINICSIGLKD 1256
EPS G IIIDGINIC++GL D
Sbjct: 541 EPSAGKIIIDGINICTLGLHD 603
Score = 32.0 bits (71), Expect = 0.71
Identities = 15/46 (32%), Positives = 26/46 (55%)
Frame = +1
Query: 604 LTDVNLEIKRGQKIAVCGPVGAGKSSLLYAILGEIPNIQGTVNVGG 649
L ++L ++ G+KI V G G+GKS+L+ + I G + + G
Sbjct: 436 LKGISLTVQGGEKIGVVGRTGSGKSTLIQVLFRLIEPSAGKIIIDG 573
>CB828089
Length = 511
Score = 171 bits (434), Expect = 6e-43
Identities = 85/134 (63%), Positives = 104/134 (77%), Gaps = 1/134 (0%)
Frame = +1
Query: 1294 LEKCHLKETISRLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNKILVLDEATASIDS 1353
L KC L+E + LDSSV ++G NWS+GQRQLFCLGR LL+R++ILVLDEATASID+
Sbjct: 1 LGKCQLQEAVQEKEGGLDSSVVEDGANWSMGQRQLFCLGRALLRRSRILVLDEATASIDN 180
Query: 1354 ATDAILQRVIRQEFAECTVITIAHRIPTVIDSDMVMILSYGKLVEYDEPSKLMETNSS-F 1412
ATD ILQ+ IR EFA+CTVIT+AHRIPTV+D V+ +S GKLVEYDEP LM+ S F
Sbjct: 181 ATDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLAISDGKLVEYDEPMNLMKREGSLF 360
Query: 1413 SKLVAEYWSSYKKS 1426
KLV EYWS ++ +
Sbjct: 361 GKLVKEYWSHFQSA 402
>CB829290
Length = 546
Score = 154 bits (389), Expect = 9e-38
Identities = 79/122 (64%), Positives = 103/122 (83%), Gaps = 5/122 (4%)
Frame = -3
Query: 1310 LDSSVSDEGGNWSLGQRQLFCLGRVLLKRNKILVLDEATASIDSATDAILQRVIRQEFAE 1369
LDS+VS+ G NWS+GQRQL CLGRVLLK++K+LVLDEATAS+D+ATD ++Q+ +RQ F+E
Sbjct: 532 LDSTVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSE 353
Query: 1370 CTVITIAHRIPTVIDSDMVMILSYGKLVEYDEPSKLME-TNSSFSKLVAEYW----SSYK 1424
TVITIAHRI +VIDSDMV++LS G + EYD P+KL+E +SSF++LVAEY SS++
Sbjct: 352 STVITIAHRITSVIDSDMVLLLSQGLIEEYDSPAKLLEDKSSSFAQLVAEYTMRASSSFE 173
Query: 1425 KS 1426
KS
Sbjct: 172 KS 167
>BI420290
Length = 398
Score = 117 bits (292), Expect = 2e-26
Identities = 59/125 (47%), Positives = 80/125 (63%), Gaps = 2/125 (1%)
Frame = +2
Query: 1106 LLLILLPHGYVSPGLVGLSLSYAFNLT--GAQIFWTRWFSTLSNNIISVERIKQFIDIPA 1163
++L+ LP G ++P + GL+++Y NL A + W N +ISVERI Q+ I +
Sbjct: 29 VMLVSLPEGIINPSIAGLAVTYGINLNVLQASVIWN--ICNAENKMISVERILQYTHIAS 202
Query: 1164 EPPAIMEDNRPPSPWPSKGRIEVQGLEIRYRPNAPLVLKGITCTFNEGSRVGVVGRTGSG 1223
E P ++ED +PPS WP G I + L+IRY + P VLK ITCTF ++GVVGRTGSG
Sbjct: 203 EAPLVIEDCKPPSNWPETGTICFKNLQIRYAEHLPSVLKNITCTFPGRKKIGVVGRTGSG 382
Query: 1224 KSTLI 1228
KSTLI
Sbjct: 383 KSTLI 397
>AV416701
Length = 406
Score = 115 bits (287), Expect = 6e-26
Identities = 54/130 (41%), Positives = 78/130 (59%)
Frame = +2
Query: 1079 FFHSNVAMEWMVIRIEALQTLTVITAALLLILLPHGYVSPGLVGLSLSYAFNLTGAQIFW 1138
FF S A+EW+ +R+E L T +LL+ P G + P + GL+ +Y NL
Sbjct: 17 FFCSIAAIEWLCLRMELLSTFVFSFCMVLLVSFPRGNIDPSMAGLAATYGLNLNSRLSRR 196
Query: 1139 TRWFSTLSNNIISVERIKQFIDIPAEPPAIMEDNRPPSPWPSKGRIEVQGLEIRYRPNAP 1198
F L N IIS+ERI Q+ +P+E P+++ED RP S WP G I++ L++RY+ N P
Sbjct: 197 ILSFCKLENKIISIERIYQYSQVPSEAPSVIEDFRPTSTWPENGTIQLIDLKVRYKENLP 376
Query: 1199 LVLKGITCTF 1208
LVL G++CTF
Sbjct: 377 LVLHGVSCTF 406
>AV781263
Length = 234
Score = 112 bits (279), Expect = 5e-25
Identities = 54/66 (81%), Positives = 62/66 (93%)
Frame = +2
Query: 216 LALEDIPTLVSEDEANTAYQNFVHEWESLGRKRSKNSTKNLVLWSIVKTYLQENILIAFY 275
LALEDIP+LVSEDEA++AYQNFVH WESL R+RSKN+TKNL LWSIV+TYL+ENILIAFY
Sbjct: 35 LALEDIPSLVSEDEADSAYQNFVHSWESLVRERSKNNTKNLFLWSIVRTYLKENILIAFY 214
Query: 276 ALLRTI 281
A LRT+
Sbjct: 215 ASLRTM 232
>AU089009
Length = 209
Score = 101 bits (252), Expect = 7e-22
Identities = 48/66 (72%), Positives = 56/66 (84%)
Frame = +1
Query: 698 HGDLTEIGQRGINLSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCIMTA 757
HGDLTEIG+RG+NLSGGQKQR+QLARA+Y +AD+YLLDDP AVDAHTA+ LFN+ I
Sbjct: 10 HGDLTEIGERGVNLSGGQKQRVQLARALYQNADVYLLDDPXXAVDAHTASNLFNEYIXEX 189
Query: 758 LREKTV 763
L KTV
Sbjct: 190 LXGKTV 207
>AU089197
Length = 658
Score = 75.5 bits (184), Expect(2) = 3e-20
Identities = 42/99 (42%), Positives = 59/99 (59%)
Frame = +1
Query: 1157 QFIDIPAEPPAIMEDNRPPSPWPSKGRIEVQGLEIRYRPNAPLVLKGITCTFNEGSRVGV 1216
QF IP+E P + P G IE+ L+++Y P AP+VLK +T F+ ++G+
Sbjct: 289 QFSSIPSEAPL----K*V*TXLPRDGMIELHKLQVQYDPAAPIVLKDVTFIFSGQKKIGI 456
Query: 1217 VGRTGSGKSTLISALFRLVEPSRGDIIIDGINICSIGLK 1255
RTGSGKSTL+ ALF +V P G I+IDG+ I + K
Sbjct: 457 XXRTGSGKSTLLQALF*IVXPLSGCILIDGVXIPRLACK 573
Score = 41.6 bits (96), Expect(2) = 3e-20
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = +3
Query: 1252 IGLKDLRMKLSIIPQEPTLFKGSIRTNL 1279
IGL+DLR K+ IIPQ+PTLF ++RT+L
Sbjct: 561 IGLQDLRTKIGIIPQDPTLFLXTVRTDL 644
>BP033858
Length = 533
Score = 95.9 bits (237), Expect = 4e-20
Identities = 43/80 (53%), Positives = 62/80 (76%)
Frame = -1
Query: 1340 KILVLDEATASIDSATDAILQRVIRQEFAECTVITIAHRIPTVIDSDMVMILSYGKLVEY 1399
++L +DEATAS+DS TDA++QR+IR++FA T+I+IAHRIPTV+D D V+++ G+ E+
Sbjct: 533 RLLFMDEATASVDSQTDAVIQRIIREDFAARTIISIAHRIPTVMDCDRVLVVDAGRAKEF 354
Query: 1400 DEPSKLMETNSSFSKLVAEY 1419
D PS L++ S F LV EY
Sbjct: 353 DRPSNLLQRQSLFGALVQEY 294
>AV776921
Length = 435
Score = 79.3 bits (194), Expect = 4e-15
Identities = 49/133 (36%), Positives = 75/133 (55%), Gaps = 5/133 (3%)
Frame = +2
Query: 1200 VLKGITCTFNEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDIIIDGINICSIGLKDLRM 1259
+L + G V +VG +GSGKST+IS + R EP GDI++DG +I + LK LR
Sbjct: 41 ILNKLCLDIPSGKIVALVGGSGSGKSTVISLIERFYEPLSGDILLDGNDIRDLDLKWLRQ 220
Query: 1260 KLSIIPQEPTLFKGSIRTNLDPLGLY-----TDNEIWKALEKCHLKETISRLPSLLDSSV 1314
++ ++ QEP LF SI+ N+ LY T E+ +A++ + I+ LP L++ V
Sbjct: 221 QIGLVNQEPALFATSIKENI----LYGKDNATLEELKRAVKLSDAQSFINNLPERLETQV 388
Query: 1315 SDEGGNWSLGQRQ 1327
+ G S GQ+Q
Sbjct: 389 GERGIQLSGGQKQ 427
Score = 57.0 bits (136), Expect = 2e-08
Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Frame = +2
Query: 604 LTDVNLEIKRGQKIAVCGPVGAGKSSLLYAILGEIPNIQGTVNVGGT------------- 650
L + L+I G+ +A+ G G+GKS+++ I + G + + G
Sbjct: 44 LNKLCLDIPSGKIVALVGGSGSGKSTVISLIERFYEPLSGDILLDGNDIRDLDLKWLRQQ 223
Query: 651 LAYVSQSSWIQSGTVRDNILFGKP-MNKARYENAIKACALDEDINDLSHGDLTEIGQRGI 709
+ V+Q + + ++++NIL+GK + A+K IN+L T++G+RGI
Sbjct: 224 IGLVNQEPALFATSIKENILYGKDNATLEELKRAVKLSDAQSFINNLPERLETQVGERGI 403
Query: 710 NLSGGQKQRI 719
LSGGQKQRI
Sbjct: 404 QLSGGQKQRI 433
>BP055390
Length = 488
Score = 75.9 bits (185), Expect = 4e-14
Identities = 39/97 (40%), Positives = 66/97 (67%), Gaps = 2/97 (2%)
Frame = +3
Query: 701 LTEIGQRGINLSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCIMTALRE 760
LT++GQRG+ LSGGQKQRI +ARA+ + I LLD+ SA+D + L + + TA+
Sbjct: 201 LTQVGQRGVQLSGGQKQRIAIARAILKNPPILLLDEATSALDTESEK-LVQEALETAMHG 377
Query: 761 KTVILVTHQVEFL--SKVVDRILDGKVIQSGSYENLL 795
+TVIL+ H++ + + V+ + +G+V+++G++ LL
Sbjct: 378 RTVILIAHRLSTVVNADVIAVVENGQVVETGTHHTLL 488
Score = 67.0 bits (162), Expect = 2e-11
Identities = 34/99 (34%), Positives = 63/99 (63%)
Frame = +3
Query: 1300 KETISRLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNKILVLDEATASIDSATDAIL 1359
K++++ +LL + V G S GQ+Q + R +LK IL+LDEAT+++D+ ++ ++
Sbjct: 171 KDSVN*CSNLL-TQVGQRGVQLSGGQKQRIAIARAILKNPPILLLDEATSALDTESEKLV 347
Query: 1360 QRVIRQEFAECTVITIAHRIPTVIDSDMVMILSYGKLVE 1398
Q + TVI IAHR+ TV+++D++ ++ G++VE
Sbjct: 348 QEALETAMHGRTVILIAHRLSTVVNADVIAVVENGQVVE 464
>TC11559 similar to UP|Q9SXT3 (Q9SXT3) Multidrug resistance protein
(Fragment), partial (41%)
Length = 460
Score = 68.2 bits (165), Expect = 9e-12
Identities = 34/80 (42%), Positives = 51/80 (63%)
Frame = +3
Query: 1200 VLKGITCTFNEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDIIIDGINICSIGLKDLRM 1259
+LKGI +G VGV+G +GSGKSTL+ AL RL EP + +D +IC + + LR
Sbjct: 135 ILKGIHLDIPKGVIVGVIGPSGSGKSTLLRALNRLWEPPSASVFLDARDICHLDVLSLRR 314
Query: 1260 KLSIIPQEPTLFKGSIRTNL 1279
K+ ++ Q P LF+G++ N+
Sbjct: 315 KVGMLFQLPALFEGTVADNV 374
>TC11425 similar to UP|Q9M1Q9 (Q9M1Q9) P-glycoprotein-like proetin, partial
(9%)
Length = 712
Score = 67.8 bits (164), Expect = 1e-11
Identities = 38/115 (33%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Frame = +2
Query: 702 TEIGQRGINLSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCIMTALREK 761
T +G+RG LSGGQKQR+ +ARA+ +I LLD+ SA+DA + ++ D + + +
Sbjct: 80 TVVGERGTLLSGGQKQRVAIARAIIKTPNILLLDEATSALDAESERVV-QDALDKVMVNR 256
Query: 762 TVILVTHQVEFL--SKVVDRILDGKVIQSGSYENLL-IAGTAFEQLVNAHKDALT 813
T ++V H++ + + V+ + +G +++ G +E L+ I + LV H A T
Sbjct: 257 TTVIVAHRLSTIKNADVITVLKNGVIVEKGRHETLINIKDGYYASLVQLHTTATT 421
Score = 62.8 bits (151), Expect = 4e-10
Identities = 29/102 (28%), Positives = 58/102 (56%)
Frame = +2
Query: 1311 DSSVSDEGGNWSLGQRQLFCLGRVLLKRNKILVLDEATASIDSATDAILQRVIRQEFAEC 1370
D+ V + G S GQ+Q + R ++K IL+LDEAT+++D+ ++ ++Q + +
Sbjct: 77 DTVVGERGTLLSGGQKQRVAIARAIIKTPNILLLDEATSALDAESERVVQDALDKVMVNR 256
Query: 1371 TVITIAHRIPTVIDSDMVMILSYGKLVEYDEPSKLMETNSSF 1412
T + +AHR+ T+ ++D++ +L G +VE L+ +
Sbjct: 257 TTVIVAHRLSTIKNADVITVLKNGVIVEKGRHETLINIKDGY 382
>BG662257
Length = 336
Score = 63.9 bits (154), Expect = 2e-10
Identities = 35/101 (34%), Positives = 59/101 (57%)
Frame = +1
Query: 1286 TDNEIWKALEKCHLKETISRLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNKILVLD 1345
T+ EI A E + + IS L D+ V D G S GQ+Q + R ++K KIL+LD
Sbjct: 34 TEAEIIAAAELANAHKFISSLQQGYDTVVGDRGIQLSGGQKQRVAIARAIVKSPKILLLD 213
Query: 1346 EATASIDSATDAILQRVIRQEFAECTVITIAHRIPTVIDSD 1386
EAT+++D+ ++ ++Q + + + T I +AHR+ T+ +D
Sbjct: 214 EATSALDAESEKVVQDALDRVRVDRTTIVVAHRLSTIKGAD 336
Score = 60.5 bits (145), Expect = 2e-09
Identities = 32/78 (41%), Positives = 48/78 (61%)
Frame = +1
Query: 693 INDLSHGDLTEIGQRGINLSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFND 752
I+ L G T +G RGI LSGGQKQR+ +ARA+ I LLD+ SA+DA + ++ D
Sbjct: 85 ISSLQQGYDTVVGDRGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESEKVV-QD 261
Query: 753 CIMTALREKTVILVTHQV 770
+ ++T I+V H++
Sbjct: 262 ALDRVRVDRTTIVVAHRL 315
>AV411197
Length = 391
Score = 63.9 bits (154), Expect = 2e-10
Identities = 33/97 (34%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Frame = +3
Query: 654 VSQSSWIQSGTVRDNILFGKP-MNKARYENAIKACALDEDINDLSHGDLTEIGQRGINLS 712
+ Q I S T+R+NI++ + ++A + A + I+ L HG T +G RG++L+
Sbjct: 57 IQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLT 236
Query: 713 GGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAIL 749
GQKQRI +AR V +A I LLD+ S++++ ++ ++
Sbjct: 237 PGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVI 347
Score = 55.5 bits (132), Expect = 6e-08
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Frame = +3
Query: 1263 IIPQEPTLFKGSIRTNLDPLGLY-----TDNEIWKALEKCHLKETISRLPSLLDSSVSDE 1317
+I QEP +F +IR N+ +Y ++ E+ +A + IS LP D+ V
Sbjct: 54 LIQQEPIIFSTTIRENI----IYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMR 221
Query: 1318 GGNWSLGQRQLFCLGRVLLKRNKILVLDEATASIDSATDAILQRVI 1363
G + + GQ+Q + RV+LK IL+LDEA++SI+S + ++Q +
Sbjct: 222 GVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVIQEAL 359
>AV418106
Length = 419
Score = 60.5 bits (145), Expect = 2e-09
Identities = 26/55 (47%), Positives = 41/55 (74%)
Frame = -2
Query: 1365 QEFAECTVITIAHRIPTVIDSDMVMILSYGKLVEYDEPSKLMETNSSFSKLVAEY 1419
++FA+ T+++IAHRIPTV+D D V+++ G E+D+PS+L+E + F LV EY
Sbjct: 418 EDFADRTIVSIAHRIPTVMDCDRVLVIDAGFAKEFDKPSRLLERPALFGALVKEY 254
>AV413975
Length = 343
Score = 52.8 bits (125), Expect = 4e-07
Identities = 26/68 (38%), Positives = 45/68 (65%), Gaps = 2/68 (2%)
Frame = +2
Query: 1182 GRIEVQGLEIRY--RPNAPLVLKGITCTFNEGSRVGVVGRTGSGKSTLISALFRLVEPSR 1239
G +E+ + Y RP+ P VLKGIT + GS+V +VG +G GK+T+ + + R +P++
Sbjct: 143 GEVELDDVWFSYPSRPSHP-VLKGITMKLHPGSKVALVGPSGGGKTTIANLIERFYDPTK 319
Query: 1240 GDIIIDGI 1247
G I+++G+
Sbjct: 320 GKILLNGV 343
>AV418183
Length = 298
Score = 52.8 bits (125), Expect = 4e-07
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Frame = +3
Query: 651 LAYVSQSSWIQSGTVRDNILFG--KPMNKARYENAIKACALDEDINDLSHGDLTEIGQRG 708
++ VSQ + + ++ +NI +G +N ENA K E I+ T +G+RG
Sbjct: 48 ISIVSQEPTLFNCSIEENIAYGFDGKLNSVDIENAAKMANAHEFISKFPEKYQTFVGERG 227
Query: 709 INLSGGQKQRIQLARAVYNDADI 731
+ LSGGQKQRI +ARA+ D I
Sbjct: 228 VRLSGGQKQRIAIARALLMDPKI 296
Score = 49.3 bits (116), Expect = 4e-06
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Frame = +3
Query: 1246 GINICSIGLKDLRMKLSIIPQEPTLFKGSIRTNL--DPLGLYTDNEIWKALEKCHLKETI 1303
G+ + I + L K+SI+ QEPTLF SI N+ G +I A + + E I
Sbjct: 3 GVPLAEISHRHLHRKISIVSQEPTLFNCSIEENIAYGFDGKLNSVDIENAAKMANAHEFI 182
Query: 1304 SRLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNKI 1341
S+ P + V + G S GQ+Q + R LL KI
Sbjct: 183 SKFPEKYQTFVGERGVRLSGGQKQRIAIARALLMDPKI 296
>TC13598 similar to UP|Q9M1Q9 (Q9M1Q9) P-glycoprotein-like proetin, partial
(7%)
Length = 552
Score = 47.4 bits (111), Expect = 2e-05
Identities = 20/77 (25%), Positives = 43/77 (54%)
Frame = +3
Query: 1336 LKRNKILVLDEATASIDSATDAILQRVIRQEFAECTVITIAHRIPTVIDSDMVMILSYGK 1395
+K IL+LDE T+++D ++ ++Q + + T + +AHR+ T+ +D++++L G
Sbjct: 3 IKSPNILLLDEXTSALDVESERVVQDALDKVMVNRTTVIVAHRLSTIKSADVIIVLKNGV 182
Query: 1396 LVEYDEPSKLMETNSSF 1412
+VE L+ +
Sbjct: 183 IVEKGRHETLISIKDGY 233
Score = 35.0 bits (79), Expect = 0.084
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Frame = +3
Query: 730 DIYLLDDPFSAVDAHTAAILFNDCIMTALREKTVILVTHQVEFL--SKVVDRILDGKVIQ 787
+I LLD+ SA+D + ++ D + + +T ++V H++ + + V+ + +G +++
Sbjct: 15 NILLLDEXTSALDVESERVV-QDALDKVMVNRTTVIVAHRLSTIKSADVIIVLKNGVIVE 191
Query: 788 SGSYENLL-IAGTAFEQLVNAHKDALT 813
G +E L+ I + LV H A T
Sbjct: 192 KGRHETLISIKDGYYASLVQLHTTATT 272
>BG662269
Length = 283
Score = 44.3 bits (103), Expect(2) = 2e-05
Identities = 20/34 (58%), Positives = 26/34 (75%)
Frame = +3
Query: 702 TEIGQRGINLSGGQKQRIQLARAVYNDADIYLLD 735
T +G+RGI LSGGQKQR+ +ARA+ + I LLD
Sbjct: 180 TIVGERGIQLSGGQKQRVAIARAIVKNPKILLLD 281
Score = 21.9 bits (45), Expect(2) = 2e-05
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 651 LAYVSQSSWIQSGTVRDNILFGKPMNKARYE 681
+ VSQ + + T+R NI +GK N E
Sbjct: 56 MGMVSQEPVLFNETIRANIAYGKGGNATEAE 148
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,069,824
Number of Sequences: 28460
Number of extensions: 359952
Number of successful extensions: 2097
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 2037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2089
length of query: 1436
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1334
effective length of database: 1,994,680
effective search space: 2660903120
effective search space used: 2660903120
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Medicago: description of AC146563.5