TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146561.5 + phase: 2 /pseudo/partial
         (263 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17751 weakly similar to UP|Q7XHN9 (Q7XHN9) Tetratricopeptide r...   167  2e-42
TC16108 weakly similar to UP|Q7XHN9 (Q7XHN9) Tetratricopeptide r...   124  2e-29
TC15130 similar to UP|O81488 (O81488) F9D12.13 protein, partial ...    28  2.1
TC18416                                                                26  6.1
BP082052                                                               26  8.0
TC8603 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding protei...    26  8.0

>TC17751 weakly similar to UP|Q7XHN9 (Q7XHN9) Tetratricopeptide
           repeat(TPR)-containing protein-like, partial (8%)
          Length = 550

 Score =  167 bits (423), Expect = 2e-42
 Identities = 83/109 (76%), Positives = 93/109 (85%)
 Frame = +3

Query: 155 LENVRDAILRMTYYWYNFMPLSRGTAAVGFAVMLGLLLAANMEFTGSIPQGFQVDWEAIL 214
           LE+VR+AILRMTYYWYNF PL +G+AAVGF VM GLLLAA+MEFTGSIPQG QVD EAIL
Sbjct: 3   LEDVRNAILRMTYYWYNFRPLYKGSAAVGFVVMQGLLLAAHMEFTGSIPQGLQVDLEAIL 182

Query: 215 NLDPNSFVDSVKSWLYPSLKVTTSWKDYHDVASTFATTGSVVAALSSYD 263
           + D NSFVDSV++WLYPSLK+TT WK Y D+ STF T GSVVAALS  D
Sbjct: 183 SSDTNSFVDSVETWLYPSLKLTTLWKGYPDIVSTFETIGSVVAALSFSD 329


>TC16108 weakly similar to UP|Q7XHN9 (Q7XHN9) Tetratricopeptide
           repeat(TPR)-containing protein-like, partial (3%)
          Length = 597

 Score =  124 bits (310), Expect = 2e-29
 Identities = 58/68 (85%), Positives = 64/68 (93%)
 Frame = +3

Query: 196 MEFTGSIPQGFQVDWEAILNLDPNSFVDSVKSWLYPSLKVTTSWKDYHDVASTFATTGSV 255
           MEFTGSIPQGFQVDWEAILN+D NSF++SV+SWLYPSLKVTTSWKDY D+ASTF TTGSV
Sbjct: 3   MEFTGSIPQGFQVDWEAILNMDLNSFMNSVQSWLYPSLKVTTSWKDYPDIASTFTTTGSV 182

Query: 256 VAALSSYD 263
           +AALSS D
Sbjct: 183 IAALSSSD 206


>TC15130 similar to UP|O81488 (O81488) F9D12.13 protein, partial (26%)
          Length = 583

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 16/37 (43%), Positives = 20/37 (53%), Gaps = 4/37 (10%)
 Frame = +3

Query: 125 EDYDAEMAMAWEALCNAYCGENYGSTDF----DVLEN 157
           ED + +     E LC A CGENY S +F    D+ EN
Sbjct: 93  EDEEEDDEEHGETLCGA-CGENYASDEFWICCDICEN 200


>TC18416 
          Length = 426

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 14/47 (29%), Positives = 24/47 (50%)
 Frame = -3

Query: 140 NAYCGENYGSTDFDVLENVRDAILRMTYYWYNFMPLSRGTAAVGFAV 186
           N + GE  G+ D D +E +    + +   W++F  L R   + GF+V
Sbjct: 157 NVFSGET*GAED-DEVEAIAAVGIGIHVVWFHFWRLQRRRVSSGFSV 20


>BP082052 
          Length = 371

 Score = 25.8 bits (55), Expect = 8.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 234 KVTTSWKDYHDVASTFA 250
           K+ TSW ++HDV S ++
Sbjct: 131 KMRTSWTEFHDVTSNYS 81


>TC8603 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding protein-like,
           partial (88%)
          Length = 1232

 Score = 25.8 bits (55), Expect = 8.0
 Identities = 10/17 (58%), Positives = 14/17 (81%)
 Frame = +1

Query: 136 EALCNAYCGENYGSTDF 152
           +ALC A CG+NYG+ +F
Sbjct: 718 DALCGA-CGDNYGTDEF 765


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.134    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,954,636
Number of Sequences: 28460
Number of extensions: 66900
Number of successful extensions: 312
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of query: 263
length of database: 4,897,600
effective HSP length: 88
effective length of query: 175
effective length of database: 2,393,120
effective search space: 418796000
effective search space used: 418796000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)