TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146557.6 - phase: 0 /pseudo
         (487 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9040 similar to UP|RL71_ARATH (P60040) 60S ribosomal protein L...    30  1.2
CB827165                                                               29  1.5
TC9369 similar to UP|Q93X72 (Q93X72) Leucine-rich repeat resista...    28  2.6
TC9482 similar to UP|Q9FI73 (Q9FI73) Mitochondrial carrier prote...    27  5.7
BP052892                                                               27  5.7
TC16970 homologue to UP|ZDS_TARER (Q9FV46) Zeta-carotene desatur...    27  9.8
NP840539 hypothetical protein [Lotus corniculatus var. japonicus]      27  9.8

>TC9040 similar to UP|RL71_ARATH (P60040) 60S ribosomal protein L7-1,
           complete
          Length = 941

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 282 EELIR-KVFLEIKGVELPNPFPRLTYAEAMNRYGSDHPDTRFDLELKDVSDIFSGTSFKI 340
           +EL+R K   ++KG    NP  +L +   +    + HP TR  L+L  +  IF+G   K+
Sbjct: 235 KELVRLKREAKLKGGFYVNPEAKLLFIVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKV 414


>CB827165 
          Length = 550

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -3

Query: 333 FSGTSFKIFS--DSLECGGVIKVLCVPSGAT 361
           FSG +FK FS  D+LE GG+   LC+P  A+
Sbjct: 389 FSG-AFKFFSWSDALEPGGIAGALCIPFSAS 300


>TC9369 similar to UP|Q93X72 (Q93X72) Leucine-rich repeat resistance
           protein-like protein, partial (70%)
          Length = 859

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 17/55 (30%), Positives = 29/55 (51%), Gaps = 3/55 (5%)
 Frame = -3

Query: 180 SPNEEIRLRYRCLDLRKQQMNSNIL---LRHNVVKLIRRYLEDIHGFVEPCHKAL 231
           SP + ++LRYRC+ L    ++  I    L H  + ++RR+   I G + P +  L
Sbjct: 197 SPLKLLKLRYRCVKLLSSPISGGIASCSLFHLKLSILRRFNRPI*GGIGPVNLLL 33


>TC9482 similar to UP|Q9FI73 (Q9FI73) Mitochondrial carrier protein-like
           (At5g48970), partial (42%)
          Length = 529

 Score = 27.3 bits (59), Expect = 5.7
 Identities = 13/46 (28%), Positives = 23/46 (49%)
 Frame = +3

Query: 334 SGTSFKIFSDSLECGGVIKVLCVPSGATKDSYILDIYNEAEKYGAK 379
           S +SF++F   L  G   K++C P    K  + ++      +YGA+
Sbjct: 156 SPSSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGAR 293


>BP052892 
          Length = 501

 Score = 27.3 bits (59), Expect = 5.7
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 278 LSLNEELIRKVFLEIKGVELP 298
           LS++ +L+ KVFLE  G ELP
Sbjct: 205 LSISRKLVSKVFLEDXGFELP 267


>TC16970 homologue to UP|ZDS_TARER (Q9FV46) Zeta-carotene desaturase,
           chloroplast precursor  (Carotene 7,8-desaturase) ,
           partial (24%)
          Length = 686

 Score = 26.6 bits (57), Expect = 9.8
 Identities = 13/32 (40%), Positives = 18/32 (55%)
 Frame = +1

Query: 422 LFHAGHHASVNKTLGHLRVYVAHKLGLIDHAK 453
           L+H  HH  V K LGHL + +A+   + D  K
Sbjct: 154 LYHCSHHLKV*K*LGHLLLKLANLCTVRDLVK 249


>NP840539 hypothetical protein [Lotus corniculatus var. japonicus]
          Length = 3654

 Score = 26.6 bits (57), Expect = 9.8
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +1

Query: 22  KTKIPLPYYEKLKPKTKKAITFKKPKPLNQSLQW 55
           K K  LPYYEK+  K    ITFK       +LQW
Sbjct: 961 KLKEALPYYEKVMDK----ITFKSELHGLAALQW 1050


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,208,197
Number of Sequences: 28460
Number of extensions: 111263
Number of successful extensions: 670
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of query: 487
length of database: 4,897,600
effective HSP length: 94
effective length of query: 393
effective length of database: 2,222,360
effective search space: 873387480
effective search space used: 873387480
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)