TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146557.1 + phase: 0 /pseudo
         (409 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP066094                                                               89  1e-18
BP084332                                                               75  3e-14
BP055006                                                               28  2.1
TC15220                                                                28  2.1
BP033852                                                               28  3.6
BP038445                                                               28  3.6

>BP066094 
          Length = 532

 Score = 89.0 bits (219), Expect = 1e-18
 Identities = 58/122 (47%), Positives = 77/122 (62%)
 Frame = +1

Query: 14  CQKCLS*WCH*RRSRCQTTSRV*GS*AS*PCL*T*EITIWLETSSQSLV**TK*FLN*K* 73
           C +CLS W H R S C +T R       *P     EI++W E SSQS+V* T+   + K*
Sbjct: 157 C*ECLSKWLHLRGSLCSSTPRFXR*EEL*PYFQIEEISLWSEASSQSMV*ETQLIPSGK* 336

Query: 74  F*KRTS*HNTLQKDS*ERHFDCANIC**YNIWFY*CISLQRIF*VNAG*I*NEYDGRIEV 133
             K  S +N+L ++    + +CAN+C**Y IW  * IS+QR+F* +AG*I*N YDGR ++
Sbjct: 337 VXKG*SRYNSLLQNLQR*YINCANLC**YYIWIC*SISMQRVF*DDAG*I*NAYDGRTQI 516

Query: 134 LS 135
           LS
Sbjct: 517 LS 522


>BP084332 
          Length = 368

 Score = 74.7 bits (182), Expect = 3e-14
 Identities = 48/109 (44%), Positives = 65/109 (59%)
 Frame = +1

Query: 296 NNCYVYSRSRIHFSCKLLYTTTLDETSVGRLSD*C*QYSHFL**Y*CYLFVKESNSTFKS 355
           N+C +Y R RI+ S  + ++  LDETS G LS+   QY + L**+ C     ES  TFK 
Sbjct: 37  NHCTIYCRGRIYLSSNMQHSDALDETSAGGLSNP*EQYPNLL**HCCNFIE*ESYLTFKG 216

Query: 356 QAY*DQTPFY*RLCSKRDFRYTIH*Y*TSMG*YIYKTLIC*KI*FY*EK 404
           +A+* +   Y*RLC++      + *Y* SMG Y+YK L    I*F+ EK
Sbjct: 217 KAH*GKVSLY*RLCTEGRTSSEVC*Y*PSMGRYLYKALSRG*I*FHSEK 363


>BP055006 
          Length = 527

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 293 KTSNNCYVYSRSRIHFSCKL 312
           K+  N Y+Y RS++HF+C +
Sbjct: 359 KSYQNVYLYGRSKLHFTCHM 300


>TC15220 
          Length = 510

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 15/37 (40%), Positives = 19/37 (50%)
 Frame = -2

Query: 156 GASEEVQARRL*SDEHSNASNLHLKQRRYWNSSRPEA 192
           G  E V++   *S+  S    LHL    +WN SR EA
Sbjct: 140 GGGESVRSGVE*SE*GSQCHRLHLSHLAWWNESRDEA 30


>BP033852 
          Length = 472

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 293 KTSNNCYVYSRSRIHFSCKL 312
           K+  N Y+Y RS +HF+C +
Sbjct: 263 KSYQNVYLYGRSNLHFTCHM 204


>BP038445 
          Length = 520

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 293 KTSNNCYVYSRSRIHFSCKL 312
           K+  N Y+Y RS +HF+C +
Sbjct: 249 KSYQNVYLYGRSNLHFTCHM 190


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.382    0.171    0.721 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,261,804
Number of Sequences: 28460
Number of extensions: 97118
Number of successful extensions: 1389
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 606
Number of HSP's gapped (non-prelim): 830
length of query: 409
length of database: 4,897,600
effective HSP length: 92
effective length of query: 317
effective length of database: 2,279,280
effective search space: 722531760
effective search space used: 722531760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.8 bits)
S2: 56 (26.2 bits)