BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146556.4 + phase: 0
(887 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP063299 178 3e-45
TC12199 152 3e-37
BP084079 146 1e-35
BP057316 136 1e-32
BP057998 127 8e-30
BI417698 117 1e-26
AV777489 108 3e-24
TC18755 similar to UP|AAN85378 (AAN85378) Resistance protein (Fr... 92 3e-19
BP056393 76 2e-14
BI418116 76 2e-14
BP055604 71 7e-13
BP075523 70 1e-12
TC18765 weakly similar to UP|Q9LVT1 (Q9LVT1) Disease resistance ... 65 4e-11
TC17265 59 4e-09
TC18941 weakly similar to UP|Q8GZF0 (Q8GZF0) Resistance protein ... 53 2e-07
BP085988 52 4e-07
BP054702 49 3e-06
AV411169 49 5e-06
BP063158 47 1e-05
BP067300 47 1e-05
>BP063299
Length = 580
Score = 178 bits (452), Expect = 3e-45
Identities = 91/182 (50%), Positives = 123/182 (67%)
Frame = +3
Query: 290 SILITTRLDIVASIMGTSDAHHLASLSDDDIWSLFKQQAFGENREERAELVAIGKKLVRK 349
S+L++TR VA IMGT A L LS++D W LFKQ AFG N EERAELVAIGK++V+K
Sbjct: 51 SVLVSTRDMDVAEIMGTCQAQRLQGLSENDCWLLFKQYAFGANNEERAELVAIGKEIVKK 230
Query: 350 CVGSPLAAKVLGSSLCCTSNEHQWISVLESEFWNLPEVDSIMSALRISYFNLKLSLRPCF 409
C G PLAA+ LG L + +W V ES WNLP+ I+ AL +SYF+L +LR CF
Sbjct: 231 CGGLPLAARALGGLLRLKNEVKEWHEVKESTLWNLPDERCILPALMLSYFHLTPTLRQCF 410
Query: 410 AFCAVFPKGFEMVKENLIHLWMANGLVTSRGNLQMEHVGDELHNLQLGGKLHIKCLENVS 469
AFCA+FPK +++KE+LI+LWMANG ++S N ++E VG+ + +C+EN S
Sbjct: 411 AFCAIFPKDAKIIKEDLIYLWMANGFISSTKNKEVEDVGNSIWK---------ECIENHS 563
Query: 470 NE 471
++
Sbjct: 564 SK 569
>TC12199
Length = 551
Score = 152 bits (383), Expect = 3e-37
Identities = 82/163 (50%), Positives = 111/163 (67%)
Frame = +2
Query: 1 MADALLGILIQNLGSFVQEELATYLGVGELTQSLSRKLTLIRAVLKDAEKKQITNDAVKE 60
MA+ALLG++ +NL S VQ E AT G+ E + LS+KL +I+AV++DAEKKQITN ++K
Sbjct: 65 MAEALLGVVFENLASLVQNEFATISGIKEKAEKLSQKLQVIKAVVEDAEKKQITNQSIKV 244
Query: 61 WLQQLRDAAYVLDDILDECSITLKAHGNNKRITRFHPMKILVRRNIGKRMKEIAKEIDDI 120
WLQQL+DAAYVLDDILDECS ++H T P I+ RR IGK++KEI + D+I
Sbjct: 245 WLQQLKDAAYVLDDILDECS--TESHRLAGLSTLIKPKNIMFRRKIGKKLKEITRRFDEI 418
Query: 121 AEERMKFGLHVGVIERQPEDEGRRQTTSVITESKVYGRDKDKE 163
AE + KF L R+ E R+T + I E ++YGR ++KE
Sbjct: 419 AEGKNKFILQESDGGRRDEVPEGRETWATIHEPELYGRQEEKE 547
>BP084079
Length = 508
Score = 146 bits (369), Expect = 1e-35
Identities = 82/164 (50%), Positives = 108/164 (65%), Gaps = 1/164 (0%)
Frame = +3
Query: 1 MADALLGILIQNLGSFVQEELATYLGVGELTQSLSRKLTLIRAVLKDAEKKQITNDAVKE 60
M +ALLG++ +NL S VQ E AT G+ + LS L LI+ VL+DAEKKQ+T+ AV
Sbjct: 27 MTEALLGVVFENLLSLVQNEFATISGIKGKAEKLSHDLDLIKGVLEDAEKKQLTDRAVMV 206
Query: 61 WLQQLRDAAYVLDDILDECSI-TLKAHGNNKRITRFHPMKILVRRNIGKRMKEIAKEIDD 119
WLQQL+DA YVLDDILDECSI +L+ G ++ F P I+ RR IG R+K+I + ++
Sbjct: 207 WLQQLKDAVYVLDDILDECSIESLRLGG----LSSFKPKSIIFRREIGNRLKDITRRFEE 374
Query: 120 IAEERMKFGLHVGVIERQPEDEGRRQTTSVITESKVYGRDKDKE 163
IAE + F L ERQ E R+T+S+I + KVYGR DKE
Sbjct: 375 IAERKKNFILRDVDRERQAEVAEWRETSSIIPQPKVYGRQDDKE 506
>BP057316
Length = 494
Score = 136 bits (343), Expect = 1e-32
Identities = 68/163 (41%), Positives = 103/163 (62%), Gaps = 2/163 (1%)
Frame = +2
Query: 255 LQKNRYLLVLDDVWTEDKEKWNKLKSLLLNGKKGASILITTRLDIVASIMGTSDAHHLAS 314
L +YLLVLDD W E +KW +L+ L+ G +G+ +L+TTR IVA MG H L S
Sbjct: 5 LSGKKYLLVLDDTWNESYQKWTQLRKYLMCGAQGSKVLVTTRSQIVAQTMGVQVIHVLNS 184
Query: 315 LSDDDIWSLFKQQAFGENREERAE-LVAIGKKLVRKCVGSPLAAKVLGSSLCCTSNEHQW 373
L+ ++ W L K+ F ++ + ++ L +IG+K+ KC G PLA + LG L S E +W
Sbjct: 185 LTLEESWGLLKKITFEDDATQVSQSLESIGEKIAEKCRGVPLAIRTLGGLLQSKSEESEW 364
Query: 374 ISVLESEFWNLPE-VDSIMSALRISYFNLKLSLRPCFAFCAVF 415
++VL+ +FW L E DSI+ L++SY NL +R CFA+C+++
Sbjct: 365 MNVLQGDFWKLCEDEDSIIPVLKLSYQNLSPQIRQCFAYCSLY 493
>BP057998
Length = 566
Score = 127 bits (319), Expect = 8e-30
Identities = 73/182 (40%), Positives = 107/182 (58%), Gaps = 4/182 (2%)
Frame = +2
Query: 273 EKWNKLKSLLLNGKKGASILITTRLDIVASIMGTSDAHHLASLSDDDIWSLFKQQA--FG 330
++WN+LK +G +G+ IL+TTR D VAS++ T +L+ LS++D WS+F A F
Sbjct: 20 DRWNQLKKPFQHGMRGSKILVTTRSDEVASVVQTGQTFNLSQLSNEDCWSVFANHACLFP 199
Query: 331 ENREERAELVAIGKKLVRKCVGSPLAAKVLGSSLCCTSNEHQWISVLESEFWNLPEVDS- 389
E L IG ++V+KC G PLAA+ LG L N W +VL + W L E +S
Sbjct: 200 GLGENTIALEKIGLEIVKKCKGLPLAAQSLGGLLRRKHNIKDWNNVLNCDIWELSESESK 379
Query: 390 IMSALRISYFNLKLSLRPCFAFCAVFPKGFEMVKENLIHLWMANGLV-TSRGNLQMEHVG 448
I+ +LRISY L L+ CFA+ +++PK +E K ++I LWMA L+ + + VG
Sbjct: 380 IIPSLRISYHYLPSYLKRCFAYFSLYPKDYEFEKNDVILLWMAEDLLPPPKQGKTLNEVG 559
Query: 449 DE 450
DE
Sbjct: 560 DE 565
>BI417698
Length = 519
Score = 117 bits (292), Expect = 1e-26
Identities = 69/142 (48%), Positives = 87/142 (60%), Gaps = 1/142 (0%)
Frame = +2
Query: 1 MADALLGILIQNLGSFVQEELATYLGVGELTQSLSRKLTLIRAVLKDAEKKQITNDAVKE 60
MADALLG + L S Q ELAT G+ Q LSR L LI+AV++DAE+KQIT+ +K
Sbjct: 89 MADALLGAVFDKLLSLAQNELATISGIKGKAQKLSRNLELIKAVVEDAEEKQITDKPIKV 268
Query: 61 WLQQLRDAAYVLDDILDECSI-TLKAHGNNKRITRFHPMKILVRRNIGKRMKEIAKEIDD 119
WLQ L+DA YVLDDILDECSI +L+ G ++ P I R IG R+KEI D+
Sbjct: 269 WLQHLKDAVYVLDDILDECSIESLRLAG----LSSLKPKNIKFRYQIGNRLKEITSRFDE 436
Query: 120 IAEERMKFGLHVGVIERQPEDE 141
IAE + K L V+ +E
Sbjct: 437 IAEGKAKLLLQERVMRGWSAEE 502
>AV777489
Length = 451
Score = 108 bits (271), Expect = 3e-24
Identities = 63/151 (41%), Positives = 90/151 (58%), Gaps = 12/151 (7%)
Frame = +1
Query: 13 LGSFVQEELATYLGVGELTQSLSRKLTLIRAVLKDAEKKQITNDAVKEWLQQLRDAAYVL 72
L S +Q+EL +LG E LS LT I+A L+DAE+KQ T+ A+K WLQ+LRDAA+VL
Sbjct: 7 LSSLIQKELGQFLGFDEELTRLSSTLTAIKATLEDAEEKQFTDRAIKVWLQKLRDAAHVL 186
Query: 73 DDILDECSIT------------LKAHGNNKRITRFHPMKILVRRNIGKRMKEIAKEIDDI 120
DDILDEC+ L + + FHP ++ R I K+MK I + +D++
Sbjct: 187 DDILDECATEALKMENGGFMCGLSDKVQSSCLFSFHPKHVVFRCTIAKKMKMIRERLDEV 366
Query: 121 AEERMKFGLHVGVIERQPEDEGRRQTTSVIT 151
A+ER +F L +++ + RQTTS+IT
Sbjct: 367 AQERTRFHLTEMATQKRAD---WRQTTSIIT 450
>TC18755 similar to UP|AAN85378 (AAN85378) Resistance protein (Fragment),
complete
Length = 880
Score = 92.4 bits (228), Expect = 3e-19
Identities = 66/232 (28%), Positives = 112/232 (47%), Gaps = 10/232 (4%)
Frame = +3
Query: 143 RRQTTSVITESKVYGRDKDKEHIVEFLLRHAGDSEELSVYSIVGHGGYGKTTLAQTVFND 202
+R ++ + + G D+ K+ ++ L++ + V S+ G GG GKTTL + V++D
Sbjct: 159 QRGDALLLDNTDLVGIDRRKKKLMGCLIKPCPVRK---VISVTGMGGMGKTTLVKQVYDD 329
Query: 203 ERVKTHFDLKIWVCVSGDINAMKVLESIIENTIG--KNPHLSSLESM-----QQKVQEIL 255
V HF W+ VS ++L + + P LE+M + ++++L
Sbjct: 330 PVVIKHFRACAWITVSQSCEIGELLRDLARQLFSEIRRPVPLGLENMRCDRLKMIIKDLL 509
Query: 256 QKNRYLLVLDDVWTEDKEKWNKLKSLLLNGKKGASILITTR---LDIVASIMGTSDAHHL 312
Q+ RYL+V DDVW +W +K L + G+ I+ITTR L +S ++L
Sbjct: 510 QRRRYLVVFDDVW--HVREWEAVKYALPDNNCGSRIMITTRRSDLAFTSSTESKGKVYNL 683
Query: 313 ASLSDDDIWSLFKQQAFGENREERAELVAIGKKLVRKCVGSPLAAKVLGSSL 364
L +D+ W LF ++ F + L+ I ++RKC G PLA + L
Sbjct: 684 QPLKEDEAWELFCRKTF-HGDSCPSHLIGICTYILRKCEGLPLAIVAISGVL 836
>BP056393
Length = 421
Score = 76.3 bits (186), Expect = 2e-14
Identities = 40/96 (41%), Positives = 59/96 (60%), Gaps = 1/96 (1%)
Frame = +1
Query: 342 IGKKLVRKCVGSPLAAKVLGSSLCCTSNEHQWISVLESEFWNLPEVDS-IMSALRISYFN 400
IG+++V++C GSPL A+ LG L + ++L S W LPE +S I+ ALRISY
Sbjct: 121 IGRQIVKRCKGSPLXAQSLGGLLRGKHDIRDXNNILNSNIWELPENESNIILALRISYHY 300
Query: 401 LKLSLRPCFAFCAVFPKGFEMVKENLIHLWMANGLV 436
L L+ C +C++FPK ++ + LI LWMA L+
Sbjct: 301 LPPHLKRCXVYCSLFPKDYKFDXDELILLWMAEDLL 408
>BI418116
Length = 584
Score = 76.3 bits (186), Expect = 2e-14
Identities = 48/179 (26%), Positives = 87/179 (47%), Gaps = 8/179 (4%)
Frame = +2
Query: 3 DALLGILIQNLGSFVQEELATYLGVGELTQSLSRKLTLIRAVLKDAEKKQITNDAVKEWL 62
+A+ ++++ L S +E + + Q + ++ I+AVL+DAE K TN WL
Sbjct: 38 EAIACLILEKLSSSAIKEFGIIWNLKDDLQRMKNTVSAIKAVLRDAEAKATTNHQTSNWL 217
Query: 63 QQLRDAAYVLDDILDECS---ITLKAHGNNKRITRFH-----PMKILVRRNIGKRMKEIA 114
++L+D Y DD+LD+ S + + NK + + +I +G MK I
Sbjct: 218 EELKDVLYDADDLLDDLSTEDLKRQVMIGNKFVRKLQIFFSKSNQIAHGLKLGHNMKAIQ 397
Query: 115 KEIDDIAEERMKFGLHVGVIERQPEDEGRRQTTSVITESKVYGRDKDKEHIVEFLLRHA 173
K + DIA + L +E +RQT S +++ +V GR+ +K + +LL ++
Sbjct: 398 KRLHDIANNKQALQLSDHPVETPTAYREQRQTYSFVSKDEVIGREDEKTLLTSYLLHNS 574
>BP055604
Length = 464
Score = 71.2 bits (173), Expect = 7e-13
Identities = 35/62 (56%), Positives = 41/62 (65%)
Frame = -3
Query: 808 WLGAMTSLQVLAICDFPELSSLPDNFQQLQNLQTLTISGCPILEKRCKRGIGEDWHKIAH 867
W G + SL+ L I P L SLPD FQ L L+ L I GCP L++RCK G GEDW KIAH
Sbjct: 462 WEG-LHSLRYLRIWGCPGLRSLPDGFQHLSALERLIIEGCPELKERCKEGTGEDWDKIAH 286
Query: 868 IP 869
+P
Sbjct: 285 VP 280
Score = 45.1 bits (105), Expect = 5e-05
Identities = 20/41 (48%), Positives = 28/41 (67%)
Frame = -3
Query: 717 KGLSSLRNMSVFSCSGFKSLSDGMRHLTCLETLHIYYCPQL 757
+GL SLR + ++ C G +SL DG +HL+ LE L I CP+L
Sbjct: 459 EGLHSLRYLRIWGCPGLRSLPDGFQHLSALERLIIEGCPEL 337
>BP075523
Length = 466
Score = 70.1 bits (170), Expect = 1e-12
Identities = 34/57 (59%), Positives = 43/57 (74%)
Frame = +1
Query: 20 ELATYLGVGELTQSLSRKLTLIRAVLKDAEKKQITNDAVKEWLQQLRDAAYVLDDIL 76
E AT G+ + LS L LI+AV++DAEKK+ITN ++K WLQQL+DA YVLDDIL
Sbjct: 85 EFATISGIKGKAEKLSHTLELIKAVVEDAEKKEITNKSIKVWLQQLKDAVYVLDDIL 255
>TC18765 weakly similar to UP|Q9LVT1 (Q9LVT1) Disease resistance
protein-like, partial (18%)
Length = 688
Score = 65.5 bits (158), Expect = 4e-11
Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 7/233 (3%)
Frame = +2
Query: 192 KTTLAQTVFNDERVKTHFDLKI-WVCVSGDINAMKVLESIIENTIGKNPHLSSLESMQQK 250
KTTLA+ V D++V+ HF +I ++ VS N ++ I + +G N L++ ++ Q
Sbjct: 2 KTTLAREVCRDDQVRCHFKERILFLTVSQSPNVEELRAKIFGHIMG-NRGLNANYAVPQW 178
Query: 251 VQ--EILQKNRYLLVLDDVWTEDKEKWNKLKSLLLNGKKGASILITTRLDIVASIMGTSD 308
+ E +++ L+VLDDVW+ L+ L+L G L+ +R +D
Sbjct: 179 MPQFECQSQSQILVVLDDVWS-----LPVLEQLVLR-VPGCKYLVVSRFKFQRIF---ND 331
Query: 309 AHHLASLSDDDIWSLFKQQAFGENREERAELVAIGKKLVRKCVGSPLAAKVLGSSLCCTS 368
+ + LS+ D SLF AFG + K++V +C PLA KV+G+SL
Sbjct: 332 TYDVELLSEGDALSLFCHHAFGHKSIPFGANQNLIKQVVAECGRLPLALKVIGASL-RDQ 508
Query: 369 NEHQWISVLESEFWNLPEVDS----IMSALRISYFNLKLSLRPCFAFCAVFPK 417
NE W+SV L +S ++ + IS L ++ CF FP+
Sbjct: 509 NEMFWLSVKTRLSQGLSIGESYEVNLIDRMAISTNYLPEKVKECFLDLCAFPE 667
>TC17265
Length = 582
Score = 58.5 bits (140), Expect = 4e-09
Identities = 39/164 (23%), Positives = 75/164 (44%), Gaps = 3/164 (1%)
Frame = -2
Query: 1 MADALLGILIQNLGSFVQEELATYLGVGELTQSLSRKLTLIRAVLKDAEKKQITNDAVKE 60
M D+++ ++ LG + EE GV + + L +L ++ L+DAE++Q ++ +K
Sbjct: 488 MVDSVVNFAVERLGDLLIEEARLLHGVSDQVKKLQTELKRMQCFLRDAERRQDEDETIKN 309
Query: 61 WLQQLRDAAYVLDDILDECSITLKAHGNNKRITRFHPMKILVRRNIGKRMKEIAKEIDDI 120
W+ ++R AY +D+++ + + + F K L +G + I I D+
Sbjct: 308 WISEIRQLAYDAEDVIEIYATKVAGGLSFGAKNPFSKGKHL--HKVGTEIVSINSRISDL 135
Query: 121 AEERMKFGLHVGVIERQPEDEGRRQ---TTSVITESKVYGRDKD 161
+GL + E +R+ + S I E V G D+D
Sbjct: 134 TRSLQTYGLTATRDNEERALEAKRELRWSYSHIVEEFVVGLDED 3
>TC18941 weakly similar to UP|Q8GZF0 (Q8GZF0) Resistance protein KR4,
partial (3%)
Length = 569
Score = 52.8 bits (125), Expect = 2e-07
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +2
Query: 791 LQKLRLFNFPSIKSLPD-WLGAMTSLQVLAICDFPELSSLPDNFQQLQNLQTLTISGCPI 849
L L + N +K L WL +TSL+ L IC P+L SLP+ +L L I CP+
Sbjct: 2 LVSLVICNLHDVKCLGGIWLQHLTSLEKLEICYSPQLESLPEEGLP-SSLSVLIIXPCPL 178
Query: 850 LEKRCKRGIGEDWHKIAHIP 869
LE C G++ KIAHIP
Sbjct: 179 LEASCHSHGGKECPKIAHIP 238
>BP085988
Length = 474
Score = 52.0 bits (123), Expect = 4e-07
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = -2
Query: 836 LQNLQTLTISGCPILEKRCKRGIGEDWHKIAHIPI 870
L L+ L I GCP L++RCK G GEDW KIAH+P+
Sbjct: 473 LSALERLIIEGCPELKERCKEGTGEDWDKIAHVPL 369
>BP054702
Length = 528
Score = 49.3 bits (116), Expect = 3e-06
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = -3
Query: 790 SLQKLRLFNFPSIKSLP-DWLGAMTSLQVLAICDFPELSSLPDNFQQLQNLQTLTISGCP 848
SL L L+NF S+K L + L ++SL L I P L SLP++ Q +L L + CP
Sbjct: 391 SLVFLGLYNFSSLKFLEGNGLQHLSSLHQLHIDKCPSLVSLPED-QLPHSLAVLNLEKCP 215
Query: 849 ILEKRCKRGIGEDWHKIAHIPI 870
+LE R + G+ W K++ IP+
Sbjct: 214 LLEARYRIRKGKHWSKVSRIPV 149
Score = 33.5 bits (75), Expect = 0.15
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Frame = -3
Query: 694 LTALESLSIERCNEMESFSEHLLKGL--SSLRNMSVFSCSGFKSLS-DGMRHLTCLETLH 750
LT+L L + + + + L + L +SL + +++ S K L +G++HL+ L LH
Sbjct: 478 LTSLSHLYVFGFGDQDLMNTLLKERLLPTSLVFLGLYNFSSLKFLEGNGLQHLSSLHQLH 299
Query: 751 IYYCPQLV------FPHNMNSLASLRQLLLVECNESILDG 784
I CP LV PH++ ++ +L + L+E I G
Sbjct: 298 IDKCPSLVSLPEDQLPHSL-AVLNLEKCPLLEARYRIRKG 182
>AV411169
Length = 424
Score = 48.5 bits (114), Expect = 5e-06
Identities = 20/32 (62%), Positives = 25/32 (77%)
Frame = +3
Query: 838 NLQTLTISGCPILEKRCKRGIGEDWHKIAHIP 869
+LQ L+I+ CP L +RCK G GEDW KIAH+P
Sbjct: 3 SLQLLSIALCPALAERCKDGTGEDWDKIAHVP 98
>BP063158
Length = 431
Score = 47.4 bits (111), Expect = 1e-05
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Frame = -1
Query: 790 SLQKLRLFNFPSIKSLPDWLGA--MTSLQVLAICDFPELSSLPDNFQQLQNLQTLTISG- 846
SL L + +FP++K L D+ G + SL L + D L LP+ +++ TL+I
Sbjct: 404 SLHYLDISHFPNLKKL-DYRGLCHLPSLTELRLSDCSGLPCLPEEGLP-KSISTLSIRRM 231
Query: 847 CPILEKRCKRGIGEDWHKIAH 867
CP+L++RC++ GEDW KI+H
Sbjct: 230 CPLLKQRCQKPHGEDWGKISH 168
>BP067300
Length = 523
Score = 47.0 bits (110), Expect = 1e-05
Identities = 27/64 (42%), Positives = 36/64 (56%)
Frame = -2
Query: 807 DWLGAMTSLQVLAICDFPELSSLPDNFQQLQNLQTLTISGCPILEKRCKRGIGEDWHKIA 866
D L +TSL+ L I P+L +P ++ TL I P LE+RC+ EDW KIA
Sbjct: 507 DSLQKLTSLETLGIACCPKLQCMPAKLPC--SISTLHIVRSPRLEERCRGRKSEDWPKIA 334
Query: 867 HIPI 870
HIP+
Sbjct: 333 HIPM 322
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,988,167
Number of Sequences: 28460
Number of extensions: 233730
Number of successful extensions: 1192
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of query: 887
length of database: 4,897,600
effective HSP length: 98
effective length of query: 789
effective length of database: 2,108,520
effective search space: 1663622280
effective search space used: 1663622280
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Medicago: description of AC146556.4