TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146555.16 + phase: 0 
         (449 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19814 homologue to UP|Q94C37 (Q94C37) At1g05230/YUP8H12_16, pa...    83  1e-16
AV774562                                                               58  3e-09
AV407274                                                               52  2e-07
TC16585                                                                33  0.096
TC9297 similar to UP|O65281 (O65281) ARABIDOPSIS THALIANA homeod...    29  1.4
BP065983                                                               27  5.3
BP046177                                                               27  5.3
TC14538 similar to GB|AAH54382.1|32450414|BC054382 feminization ...    27  6.9
TC19817 weakly similar to UP|MCCB_ARATH (Q9LDD8) Methylcrotonyl-...    27  9.0
CB829534                                                               27  9.0
TC15729 homologue to UP|RB1C_ARATH (O04486) Ras-related protein ...    27  9.0

>TC19814 homologue to UP|Q94C37 (Q94C37) At1g05230/YUP8H12_16, partial (17%)
          Length = 389

 Score = 82.8 bits (203), Expect = 1e-16
 Identities = 46/113 (40%), Positives = 63/113 (55%)
 Frame = +3

Query: 185 DAGVLIPQIGRTSFLKLADRMMRRFCANLGSTTKNPWIRLAPLPAGSADIRVMIANDMAG 244
           D GV+  Q GR S LKLA+RM+  FCA + ++T + W  ++   A + D+RVM    +  
Sbjct: 48  DVGVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTISGTGAETDDVRVMTRKSV-D 224

Query: 245 STNEPIGTSLFFCTTLWLNVSPNRLFNFLRHEKSRSKWDKHSQNLSIREFACI 297
               P G  L   T+ WL V P R+F FLR E SRS+WD  S    ++E A I
Sbjct: 225 DPGRPPGIVLSAATSFWLPVPPKRVFEFLRDENSRSEWDILSNGGVVQEMAHI 383


>AV774562 
          Length = 460

 Score = 58.2 bits (139), Expect = 3e-09
 Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 4/151 (2%)
 Frame = +3

Query: 78  RKCVFARYSKQFTHNIWAVVDVSLEDILQS---PSNNFHKRPSGCLIEGMPDGNSKVIWL 134
           R+    RY KQ +   WA+VDVS++ +  +   PS+N        L+       +K    
Sbjct: 3   REVYLVRYCKQLSGEQWAIVDVSIDKVKTTSTLPSSNAENAHPVALLRTSQMAIAK*SG* 182

Query: 135 EHVEADYSKLSDLFRPLVTSALAFGATRWLTSIVRYIEWSETLKAPKL-IADAGVLIPQI 193
              E     +  ++R +V S LAFGA  W+ ++    E      A  + + D+  +    
Sbjct: 183 STCECQKGAVHTMYRAIVNSGLAFGARHWIATLQLQCERLVFFMATNVPMKDSTGVATWA 362

Query: 194 GRTSFLKLADRMMRRFCANLGSTTKNPWIRL 224
            R S LKLA RM   FC  +G+++ + W ++
Sbjct: 363 ERKSILKLAQRMTWGFCHAVGASSFHTWTKV 455


>AV407274 
          Length = 285

 Score = 52.4 bits (124), Expect = 2e-07
 Identities = 32/95 (33%), Positives = 52/95 (54%)
 Frame = +2

Query: 207 RRFCANLGSTTKNPWIRLAPLPAGSADIRVMIANDMAGSTNEPIGTSLFFCTTLWLNVSP 266
           + FC+ + +++ + W  L  L     D+RVM   ++     EP G  L   T++W+ VS 
Sbjct: 2   KNFCSGVCASSVHKW-ELLHLGNMGDDMRVMTRKNL-DDPGEPHGIVLSAATSVWMPVSR 175

Query: 267 NRLFNFLRHEKSRSKWDKHSQNLSIREFACILTGK 301
           +RLF+FLR E+ RS+WD  S    ++E   I  G+
Sbjct: 176 HRLFDFLRDEQLRSEWDILSNGGPMQEMVHIAKGQ 280


>TC16585 
          Length = 426

 Score = 33.1 bits (74), Expect = 0.096
 Identities = 16/44 (36%), Positives = 26/44 (58%)
 Frame = +2

Query: 393 SFHIIGKANNAASIPPESVQTIYNMVTETMAAIKDAVSYHSRLN 436
           S H+     + ASIPP S+++  N V      +K+++SY +RLN
Sbjct: 119 SNHLHSLTTSLASIPPSSIESPANAVAPFPLRLKNSISY*ARLN 250


>TC9297 similar to UP|O65281 (O65281) ARABIDOPSIS THALIANA homeodomain
           protein AHDP (SP:P93041), partial (7%)
          Length = 598

 Score = 29.3 bits (64), Expect = 1.4
 Identities = 15/42 (35%), Positives = 25/42 (58%)
 Frame = +3

Query: 389 LLTISFHIIGKANNAASIPPESVQTIYNMVTETMAAIKDAVS 430
           LLT+ F I+      A++  ESV T+ N+++ T+  IK + S
Sbjct: 93  LLTVGFQILVNNMPTANLSVESVDTVNNLISCTIQKIKASPS 218


>BP065983 
          Length = 356

 Score = 27.3 bits (59), Expect = 5.3
 Identities = 14/53 (26%), Positives = 24/53 (44%)
 Frame = -1

Query: 246 TNEPIGTSLFFCTTLWLNVSPNRLFNFLRHEKSRSKWDKHSQNLSIREFACIL 298
           T E    + F    L L++  N+    L H +   +W+++  NL I  F C +
Sbjct: 299 TTEEEDRNSFIDLHLHLHLHLNKSSPLLSHHEGAPRWNQNR*NLEIHTFPCFI 141


>BP046177 
          Length = 567

 Score = 27.3 bits (59), Expect = 5.3
 Identities = 15/32 (46%), Positives = 20/32 (61%), Gaps = 1/32 (3%)
 Frame = -2

Query: 306 RVSLLRARDKNEIFYLQESYKDTTAS-YVIYC 336
           R SLLR +D  EI YLQE   D  ++ Y ++C
Sbjct: 335 RHSLLRMKDCLEILYLQECATDHESNIYFLFC 240


>TC14538 similar to GB|AAH54382.1|32450414|BC054382 feminization 1 homolog a
            {Mus musculus;}, partial (3%)
          Length = 2631

 Score = 26.9 bits (58), Expect = 6.9
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
 Frame = -2

Query: 277  KSRSKWDKHSQNLSIREFACILTG--KHPENRVSLLRARDKN----EIFYLQESYKDTTA 330
            + RSK    SQ+   +   CI+ G  K  ++ V   R R       E    + SYK  + 
Sbjct: 1055 EQRSKPFYRSQSHPCKALFCIVQGGAKTRKHHVHTRRNRPSGTPLCETQGREHSYKGISL 876

Query: 331  SYV-IYCPLDEQKLTHLATGSNP 352
                ++ PLDEQK T  + GS P
Sbjct: 875  GLSSLHSPLDEQKDTQSSHGSKP 807


>TC19817 weakly similar to UP|MCCB_ARATH (Q9LDD8) Methylcrotonyl-CoA
           carboxylase beta chain, mitochondrial precursor
           (3-Methylcrotonyl-CoA carboxylase 2) (MCCase beta
           subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase
           beta subunit) , partial (15%)
          Length = 446

 Score = 26.6 bits (57), Expect = 9.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 129 SKVIWLEHVEADYSKLSDLFR 149
           SK IWL H++ +Y  L  LFR
Sbjct: 415 SKQIWLLHIDINYFSLVPLFR 353


>CB829534 
          Length = 539

 Score = 26.6 bits (57), Expect = 9.0
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
 Frame = +3

Query: 317 EIFYLQ-----ESYKDTTASYVIYCPLDEQKLTHLATGSNPDDVVAFPSGFAIIPGGLPR 371
           ++F LQ     + +   T++ +++ P+D          S  DD    PSGF I+    P 
Sbjct: 111 DVFLLQLCSGVDEHAVGTSAELVFAPID---------ASFSDDAPILPSGFRIV----PL 251

Query: 372 DGDKGKGNANSTANDESLLTI--SFHIIGKANNAASIPPESVQTI 414
           D      + N T +  S L +  + +    AN+  S   +SV TI
Sbjct: 252 DSGTDAASPNRTLDLASSLEVGTTANKAAGANSGHSGSTKSVMTI 386


>TC15729 homologue to UP|RB1C_ARATH (O04486) Ras-related protein Rab11C,
           partial (85%)
          Length = 860

 Score = 26.6 bits (57), Expect = 9.0
 Identities = 19/56 (33%), Positives = 30/56 (52%)
 Frame = -3

Query: 5   EQGLQIEASRDKALIKISPTKLVELLMDVNQWSTAFYNIVSGARILGSIEGSYDEK 60
           +QG   E   +K  I  S  ++V+  +DV  WS  +  +V    ILG+ +GS DE+
Sbjct: 795 KQGAATEIEFEK*SITYSVQEVVQHDLDVLGWSPPWMVMVLPCLILGA-DGSVDEE 631


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,001,718
Number of Sequences: 28460
Number of extensions: 112965
Number of successful extensions: 504
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of query: 449
length of database: 4,897,600
effective HSP length: 93
effective length of query: 356
effective length of database: 2,250,820
effective search space: 801291920
effective search space used: 801291920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)